Wall clock time and date at job start Thu Apr 9 2020 13:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.29856 * 2 1 4 4 C 1.52922 * 109.29791 * 119.58214 * 2 1 3 5 5 C 1.53343 * 108.67142 * 170.85813 * 4 2 1 6 6 H 1.08999 * 109.67421 * 52.24280 * 5 4 2 7 7 C 1.50706 * 109.67111 * 172.73866 * 5 4 2 8 8 O 1.21290 * 120.00141 * 24.64410 * 7 5 4 9 9 N 1.34777 * 119.99454 * 204.64505 * 7 5 4 10 10 C 1.37102 * 119.99643 * 175.41792 * 9 7 5 11 11 H 1.08000 * 120.00302 * 336.00077 * 10 9 7 12 12 C 1.38953 * 119.99844 * 155.99581 * 10 9 7 13 13 N 1.31412 * 120.00272 * 344.86155 * 12 10 9 14 14 Si 1.86804 * 119.99604 * 164.86397 * 12 10 9 15 15 H 1.48499 * 109.47014 * 90.00554 * 14 12 10 16 16 H 1.48505 * 109.46573 * 209.99908 * 14 12 10 17 17 H 1.48495 * 109.47471 * 329.99889 * 14 12 10 18 18 C 1.46497 * 120.00551 * 355.14217 * 9 7 5 19 19 C 1.52997 * 117.50361 * 135.48272 * 18 9 7 20 20 C 1.52990 * 60.00073 * 252.51155 * 19 18 9 21 21 C 1.53072 * 108.42827 * 292.47085 * 5 4 2 22 22 C 1.50172 * 109.89649 * 48.88224 * 21 5 4 23 23 O 1.21284 * 118.24585 * 162.41105 * 22 21 5 24 24 N 1.33351 * 123.50662 * 342.46167 * 22 21 5 25 25 H 1.09000 * 109.47665 * 300.41621 * 1 2 3 26 26 H 1.09003 * 109.46875 * 60.42009 * 1 2 3 27 27 H 1.09006 * 109.47400 * 180.41170 * 1 2 3 28 28 H 1.09001 * 109.60198 * 51.10440 * 4 2 1 29 29 H 1.08991 * 109.60539 * 290.61636 * 4 2 1 30 30 H 0.96997 * 119.99880 * 185.04925 * 13 12 10 31 31 H 1.09008 * 115.54804 * 281.18939 * 18 9 7 32 32 H 1.09003 * 117.49355 * 0.02562 * 19 18 9 33 33 H 1.08996 * 117.50209 * 145.01603 * 19 18 9 34 34 H 1.09000 * 117.49979 * 252.50792 * 20 19 18 35 35 H 1.09002 * 117.50403 * 107.48746 * 20 19 18 36 36 H 1.09001 * 109.39850 * 169.03217 * 21 5 4 37 37 H 1.09004 * 109.40119 * 288.77016 * 21 5 4 38 38 H 0.97004 * 117.94747 * 182.19941 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0287 0.0000 4 6 2.0354 -0.7125 1.2552 5 6 3.5513 -0.9080 1.1319 6 1 4.0265 0.0450 0.8994 7 6 4.1005 -1.4457 2.4283 8 8 3.3792 -2.0638 3.1825 9 7 5.3931 -1.2397 2.7494 10 6 5.8696 -1.6461 3.9690 11 1 5.1917 -1.7648 4.8014 12 6 7.2247 -1.9054 4.1342 13 7 7.9983 -2.0539 3.0823 14 14 7.9467 -2.0430 5.8516 15 1 7.8749 -3.4545 6.3071 16 1 9.3644 -1.6015 5.8292 17 1 7.1749 -1.1822 6.7835 18 6 6.2906 -0.5870 1.7929 19 6 7.2265 0.4980 2.3293 20 6 6.0246 0.8835 1.4648 21 6 3.8202 -1.9076 0.0043 22 6 3.0432 -1.5178 -1.2203 23 8 3.3757 -1.9918 -2.2860 24 7 2.0078 -0.6778 -1.1986 25 1 -0.3634 0.5203 0.8862 26 1 -0.3633 0.5073 -0.8938 27 1 -0.3634 -1.0277 0.0074 28 1 1.5477 -1.6831 1.3461 29 1 1.8150 -0.1062 2.1336 30 1 8.9278 -2.3070 3.1958 31 1 6.6641 -1.2223 0.9898 32 1 7.1748 0.7258 3.3940 33 1 8.2161 0.5765 1.8793 34 1 6.2234 1.2158 0.4459 35 1 5.1818 1.3653 1.9605 36 1 4.8850 -1.9127 -0.2286 37 1 3.5160 -2.9043 0.3238 38 1 1.5432 -0.5073 -2.0329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408200378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:41 Heat of formation + Delta-G solvation = -45.616592 kcal Electronic energy + Delta-G solvation = -21303.182523 eV Core-core repulsion = 18146.386327 eV Total energy + Delta-G solvation = -3156.796196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36129 -38.71507 -36.72531 -36.01024 -33.28694 -32.58526 -31.15316 -30.92608 -27.01467 -25.70698 -23.43798 -22.18722 -21.59013 -21.38356 -19.11076 -18.57700 -17.07877 -16.93108 -16.22284 -15.81122 -15.07515 -14.97919 -14.46090 -14.25635 -14.05465 -13.69318 -13.30939 -13.05478 -12.74650 -12.51019 -12.18094 -11.96173 -11.45387 -11.42164 -11.17412 -11.09875 -10.80487 -10.67500 -10.59541 -10.42514 -10.37938 -9.80470 -9.74024 -9.39017 -9.00084 -8.84818 -8.31948 -7.72196 -6.33608 -3.88614 2.85252 3.14012 3.23585 3.27638 3.39489 3.78461 4.06337 4.54250 4.64921 4.75982 4.81162 4.97996 5.05807 5.19329 5.36231 5.39518 5.46467 5.64805 5.73639 5.77946 5.80670 5.95173 5.96962 6.05964 6.13215 6.19987 6.24398 6.35320 6.51898 6.72916 6.87990 6.90149 7.11516 7.46573 7.56423 8.09565 8.38688 8.45512 9.15612 9.39020 9.94642 10.71904 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.005982 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.141739 B = 4679.762530 C = 4967.936669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.107 4.107 6 H 0.096 0.904 7 C 0.458 3.542 8 O -0.585 6.585 9 N -0.415 5.415 10 C -0.316 4.316 11 H 0.097 0.903 12 C 0.042 3.958 13 N -0.866 5.866 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.128 3.872 19 C -0.133 4.133 20 C -0.228 4.228 21 C -0.120 4.120 22 C 0.528 3.472 23 O -0.565 6.565 24 N -0.717 5.717 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.268 0.732 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 7.349 -5.452 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.129 4.129 6 H 0.114 0.886 7 C 0.246 3.754 8 O -0.469 6.469 9 N -0.133 5.133 10 C -0.443 4.443 11 H 0.115 0.885 12 C -0.163 4.163 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.023 3.977 19 C -0.171 4.171 20 C -0.266 4.266 21 C -0.160 4.160 22 C 0.316 3.684 23 O -0.444 6.444 24 N -0.369 5.369 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.507 6.774 -5.413 11.469 hybrid contribution 0.453 0.010 0.530 0.697 sum -7.053 6.784 -4.883 10.937 Atomic orbital electron populations 1.22157 0.94399 1.02955 1.02549 1.21051 0.94398 0.96254 0.85251 0.90774 1.21738 0.94777 1.02128 0.96062 1.21403 0.96361 1.00201 0.94908 0.88636 1.19709 0.83429 0.84614 0.87659 1.90524 1.58413 1.44851 1.53130 1.43123 1.06496 1.49264 1.14396 1.19532 0.92272 1.45299 0.87215 0.88509 1.25245 0.96528 0.96016 0.98522 1.69895 1.07459 1.44048 1.28902 0.86063 0.78110 0.78815 0.82587 1.20333 1.20805 1.19482 1.21065 0.95704 0.86116 0.94839 1.22679 0.93341 1.01927 0.99110 1.23578 1.01788 1.00692 1.00585 1.21540 1.01797 1.01124 0.91571 1.20263 0.79786 0.77426 0.90945 1.90725 1.67795 1.54304 1.31579 1.45656 1.32816 1.46572 1.11879 0.90833 0.92296 0.91818 0.90231 0.89668 0.92171 0.87824 0.89114 0.89695 0.89490 0.89636 0.87714 0.87928 0.77131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.38 37.16 0.35 -1.04 16 2 C 0.14 1.49 3.67 -68.37 -0.25 1.24 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.57 4.01 -26.59 -0.11 -1.68 16 5 C -0.11 -1.84 1.88 -91.55 -0.17 -2.01 16 6 H 0.10 1.54 5.12 -51.93 -0.27 1.27 16 7 C 0.46 10.46 6.68 -10.98 -0.07 10.39 16 8 O -0.58 -15.35 16.00 5.55 0.09 -15.26 16 9 N -0.42 -10.03 2.92 -107.73 -0.32 -10.34 16 10 C -0.32 -8.43 8.83 -14.93 -0.13 -8.56 16 11 H 0.10 2.73 7.50 -52.49 -0.39 2.34 16 12 C 0.04 1.07 4.37 -17.47 -0.08 0.99 16 13 N -0.87 -22.10 10.67 55.50 0.59 -21.50 16 14 Si 0.92 20.13 29.58 -169.99 -5.03 15.10 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 18 C 0.13 2.71 3.24 -67.94 -0.22 2.49 16 19 C -0.13 -2.63 8.27 -26.74 -0.22 -2.85 16 20 C -0.23 -3.91 8.33 -26.74 -0.22 -4.13 16 21 C -0.12 -2.06 5.28 -28.10 -0.15 -2.21 16 22 C 0.53 8.57 7.71 -11.87 -0.09 8.48 16 23 O -0.56 -11.04 17.78 5.55 0.10 -10.94 16 24 N -0.72 -9.01 5.12 -54.86 -0.28 -9.29 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 31 H 0.10 2.28 7.69 -51.92 -0.40 1.88 16 32 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 33 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 1.43 7.76 -51.93 -0.40 1.03 16 36 H 0.10 1.86 7.35 -51.93 -0.38 1.48 16 37 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 38 H 0.39 4.28 8.66 -40.82 -0.35 3.93 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -30.95 308.25 -7.09 -38.05 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.53 Total: 8.45 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.37 Total: 1.10 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.00 Total: -41.14 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: 0.19 Total: -26.20 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.95 -7.09 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408200378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.570 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds