Wall clock time and date at job start Thu Apr 9 2020 13:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.29856 * 2 1 4 4 C 1.52922 * 109.29791 * 119.58214 * 2 1 3 5 5 C 1.53343 * 108.67142 * 170.85813 * 4 2 1 6 6 H 1.08999 * 109.67421 * 52.24280 * 5 4 2 7 7 C 1.50706 * 109.67111 * 172.73866 * 5 4 2 8 8 O 1.21290 * 120.00141 * 24.64410 * 7 5 4 9 9 N 1.34777 * 119.99454 * 204.64505 * 7 5 4 10 10 C 1.37102 * 119.99643 * 175.41792 * 9 7 5 11 11 H 1.08000 * 120.00302 * 336.00077 * 10 9 7 12 12 C 1.38953 * 119.99844 * 155.99581 * 10 9 7 13 13 N 1.31412 * 120.00272 * 344.86155 * 12 10 9 14 14 Si 1.86804 * 119.99604 * 164.86397 * 12 10 9 15 15 H 1.48499 * 109.47014 * 90.00554 * 14 12 10 16 16 H 1.48505 * 109.46573 * 209.99908 * 14 12 10 17 17 H 1.48495 * 109.47471 * 329.99889 * 14 12 10 18 18 C 1.46497 * 120.00551 * 355.14217 * 9 7 5 19 19 C 1.52997 * 117.50361 * 135.48272 * 18 9 7 20 20 C 1.52990 * 60.00073 * 252.51155 * 19 18 9 21 21 C 1.53072 * 108.42827 * 292.47085 * 5 4 2 22 22 C 1.50172 * 109.89649 * 48.88224 * 21 5 4 23 23 O 1.21284 * 118.24585 * 162.41105 * 22 21 5 24 24 N 1.33351 * 123.50662 * 342.46167 * 22 21 5 25 25 H 1.09000 * 109.47665 * 300.41621 * 1 2 3 26 26 H 1.09003 * 109.46875 * 60.42009 * 1 2 3 27 27 H 1.09006 * 109.47400 * 180.41170 * 1 2 3 28 28 H 1.09001 * 109.60198 * 51.10440 * 4 2 1 29 29 H 1.08991 * 109.60539 * 290.61636 * 4 2 1 30 30 H 0.96997 * 119.99880 * 185.04925 * 13 12 10 31 31 H 1.09008 * 115.54804 * 281.18939 * 18 9 7 32 32 H 1.09003 * 117.49355 * 0.02562 * 19 18 9 33 33 H 1.08996 * 117.50209 * 145.01603 * 19 18 9 34 34 H 1.09000 * 117.49979 * 252.50792 * 20 19 18 35 35 H 1.09002 * 117.50403 * 107.48746 * 20 19 18 36 36 H 1.09001 * 109.39850 * 169.03217 * 21 5 4 37 37 H 1.09004 * 109.40119 * 288.77016 * 21 5 4 38 38 H 0.97004 * 117.94747 * 182.19941 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0287 0.0000 4 6 2.0354 -0.7125 1.2552 5 6 3.5513 -0.9080 1.1319 6 1 4.0265 0.0450 0.8994 7 6 4.1005 -1.4457 2.4283 8 8 3.3792 -2.0638 3.1825 9 7 5.3931 -1.2397 2.7494 10 6 5.8696 -1.6461 3.9690 11 1 5.1917 -1.7648 4.8014 12 6 7.2247 -1.9054 4.1342 13 7 7.9983 -2.0539 3.0823 14 14 7.9467 -2.0430 5.8516 15 1 7.8749 -3.4545 6.3071 16 1 9.3644 -1.6015 5.8292 17 1 7.1749 -1.1822 6.7835 18 6 6.2906 -0.5870 1.7929 19 6 7.2265 0.4980 2.3293 20 6 6.0246 0.8835 1.4648 21 6 3.8202 -1.9076 0.0043 22 6 3.0432 -1.5178 -1.2203 23 8 3.3757 -1.9918 -2.2860 24 7 2.0078 -0.6778 -1.1986 25 1 -0.3634 0.5203 0.8862 26 1 -0.3633 0.5073 -0.8938 27 1 -0.3634 -1.0277 0.0074 28 1 1.5477 -1.6831 1.3461 29 1 1.8150 -0.1062 2.1336 30 1 8.9278 -2.3070 3.1958 31 1 6.6641 -1.2223 0.9898 32 1 7.1748 0.7258 3.3940 33 1 8.2161 0.5765 1.8793 34 1 6.2234 1.2158 0.4459 35 1 5.1818 1.3653 1.9605 36 1 4.8850 -1.9127 -0.2286 37 1 3.5160 -2.9043 0.3238 38 1 1.5432 -0.5073 -2.0329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408200378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:38 Heat of formation + Delta-G solvation = -66.672969 kcal Electronic energy + Delta-G solvation = -21304.095596 eV Core-core repulsion = 18146.386327 eV Total energy + Delta-G solvation = -3157.709269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71821 -40.35380 -38.16415 -37.54329 -34.98374 -34.11157 -32.98243 -32.02765 -28.16451 -27.49371 -24.95910 -23.26831 -23.13497 -22.98335 -20.59213 -20.04809 -18.76376 -18.25561 -17.75887 -17.22610 -16.82471 -16.34078 -15.94035 -15.88924 -15.46234 -15.13375 -14.95549 -14.29918 -14.15573 -13.78908 -13.54430 -13.19666 -13.03966 -12.92695 -12.55949 -12.40765 -12.35902 -12.25575 -12.14143 -12.04854 -11.82608 -11.49110 -11.20181 -10.96783 -10.60909 -10.13074 -10.07953 -9.62369 -8.28084 -5.91122 1.36081 1.41639 1.51961 1.54865 1.98408 2.27109 2.31041 2.91506 3.03486 3.21407 3.54082 3.70095 3.75997 3.86642 4.16611 4.19735 4.23042 4.36389 4.39674 4.44981 4.66132 4.70463 4.73295 4.83084 4.96203 4.97957 5.10172 5.15752 5.26015 5.38023 5.39645 5.45427 5.52624 5.87450 6.13184 6.28256 6.54367 7.18573 7.21689 7.52169 8.08174 8.74814 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.005982 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.141739 B = 4679.762530 C = 4967.936669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.103 0.897 4 C -0.107 4.107 5 C -0.091 4.091 6 H 0.114 0.886 7 C 0.448 3.552 8 O -0.629 6.629 9 N -0.427 5.427 10 C -0.349 4.349 11 H 0.069 0.931 12 C 0.015 3.985 13 N -0.877 5.877 14 Si 0.974 3.026 15 H -0.281 1.281 16 H -0.269 1.269 17 H -0.270 1.270 18 C 0.102 3.898 19 C -0.140 4.140 20 C -0.183 4.183 21 C -0.117 4.117 22 C 0.534 3.466 23 O -0.601 6.601 24 N -0.698 5.698 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.271 0.729 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 9.561 -6.526 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.120 0.880 4 C -0.146 4.146 5 C -0.113 4.113 6 H 0.132 0.868 7 C 0.238 3.762 8 O -0.517 6.517 9 N -0.144 5.144 10 C -0.477 4.477 11 H 0.086 0.914 12 C -0.189 4.189 13 N -0.514 5.514 14 Si 0.798 3.202 15 H -0.207 1.207 16 H -0.194 1.194 17 H -0.195 1.195 18 C -0.003 4.003 19 C -0.177 4.177 20 C -0.221 4.221 21 C -0.157 4.157 22 C 0.322 3.678 23 O -0.483 6.483 24 N -0.350 5.350 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.184 9.029 -6.503 13.813 hybrid contribution 0.640 -0.712 0.903 1.316 sum -7.543 8.317 -5.600 12.548 Atomic orbital electron populations 1.22138 0.91973 1.03036 1.04434 1.21201 0.96190 0.96474 0.82501 0.87962 1.21752 0.92445 1.01972 0.98399 1.21312 0.98234 1.00297 0.91445 0.86839 1.20697 0.82879 0.83714 0.88950 1.90482 1.59466 1.46695 1.55025 1.43324 1.07365 1.49572 1.14159 1.19446 0.92682 1.47537 0.88038 0.91351 1.25834 0.96213 0.95197 1.01686 1.69973 1.07617 1.43637 1.30146 0.85231 0.77842 0.78368 0.78758 1.20657 1.19366 1.19515 1.21034 0.97063 0.87656 0.94537 1.22620 0.94685 1.01884 0.98552 1.23630 1.00152 0.96487 1.01842 1.21427 1.01642 1.00404 0.92254 1.19898 0.80434 0.77895 0.89612 1.90715 1.69168 1.56033 1.32401 1.45549 1.31273 1.44959 1.13224 0.89521 0.89862 0.92713 0.91918 0.89335 0.91863 0.89245 0.91183 0.88871 0.85907 0.88719 0.88656 0.89665 0.75486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.38 71.98 0.68 -1.42 16 2 C 0.14 2.58 3.67 45.11 0.17 2.75 16 3 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -2.94 4.01 30.68 0.12 -2.81 16 5 C -0.09 -3.08 1.88 -11.40 -0.02 -3.11 16 6 H 0.11 3.38 5.12 -2.39 -0.01 3.37 16 7 C 0.45 20.97 6.68 87.66 0.59 21.56 16 8 O -0.63 -34.44 16.00 -3.06 -0.05 -34.49 16 9 N -0.43 -21.15 2.92 -613.13 -1.79 -22.94 16 10 C -0.35 -19.33 8.83 84.04 0.74 -18.59 16 11 H 0.07 4.08 7.50 -2.91 -0.02 4.06 16 12 C 0.01 0.77 4.37 84.93 0.37 1.14 16 13 N -0.88 -45.19 10.67 21.66 0.23 -44.96 16 14 Si 0.97 41.78 29.58 68.60 2.03 43.81 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 C 0.10 4.28 3.24 44.99 0.15 4.43 16 19 C -0.14 -5.41 8.27 30.59 0.25 -5.15 16 20 C -0.18 -5.79 8.33 30.59 0.25 -5.53 16 21 C -0.12 -4.02 5.28 29.71 0.16 -3.86 16 22 C 0.53 16.65 7.71 87.71 0.68 17.32 16 23 O -0.60 -23.00 17.78 -3.04 -0.05 -23.05 16 24 N -0.70 -15.49 5.12 -446.66 -2.29 -17.78 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.27 13.26 8.32 -92.71 -0.77 12.49 16 31 H 0.09 3.99 7.69 -2.38 -0.02 3.97 16 32 H 0.07 3.00 7.64 -2.39 -0.02 2.98 16 33 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.09 2.86 7.76 -2.39 -0.02 2.85 16 36 H 0.10 3.44 7.35 -2.39 -0.02 3.42 16 37 H 0.09 3.21 8.09 -2.38 -0.02 3.19 16 38 H 0.41 7.42 8.66 -92.71 -0.80 6.62 16 Total: -1.00 -69.97 308.25 2.47 -67.49 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.27 Total: 25.19 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 4.13 Total: 6.73 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.85 Total: -85.69 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -0.10 Total: -57.54 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.97 2.47 -67.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408200378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.821 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds