Wall clock time and date at job start Thu Apr 9 2020 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.12627 * 2 1 4 4 C 1.52921 * 109.30035 * 119.48178 * 2 1 3 5 5 C 1.53345 * 108.67177 * 69.56250 * 4 2 1 6 6 H 1.09007 * 109.67037 * 307.79034 * 5 4 2 7 7 C 1.50703 * 109.67066 * 187.26463 * 5 4 2 8 8 O 1.21290 * 120.00172 * 359.97438 * 7 5 4 9 9 N 1.34773 * 119.99860 * 179.97438 * 7 5 4 10 10 C 1.37102 * 119.99995 * 179.97438 * 9 7 5 11 11 H 1.07996 * 119.99854 * 223.75571 * 10 9 7 12 12 C 1.38953 * 119.99890 * 43.75054 * 10 9 7 13 13 N 1.31413 * 119.99884 * 18.38631 * 12 10 9 14 14 Si 1.86796 * 119.99887 * 198.37918 * 12 10 9 15 15 H 1.48499 * 109.47418 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47351 * 120.00741 * 14 12 10 17 17 H 1.48510 * 109.47058 * 240.00554 * 14 12 10 18 18 C 1.46498 * 120.00382 * 359.97438 * 9 7 5 19 19 C 1.53000 * 117.50204 * 187.83101 * 18 9 7 20 20 C 1.53001 * 117.49894 * 119.20574 * 18 9 7 21 21 C 1.53059 * 108.42974 * 67.52986 * 5 4 2 22 22 C 1.50183 * 109.88941 * 311.09964 * 21 5 4 23 23 O 1.21289 * 118.24136 * 197.58038 * 22 21 5 24 24 N 1.33344 * 123.51112 * 17.58006 * 22 21 5 25 25 H 1.09001 * 109.46791 * 179.48289 * 1 2 3 26 26 H 1.09004 * 109.46843 * 299.48288 * 1 2 3 27 27 H 1.08995 * 109.47377 * 59.47958 * 1 2 3 28 28 H 1.08998 * 109.59751 * 189.31451 * 4 2 1 29 29 H 1.08996 * 109.60506 * 309.80198 * 4 2 1 30 30 H 0.96999 * 119.99574 * 174.84037 * 13 12 10 31 31 H 1.09002 * 115.54687 * 333.54266 * 18 9 7 32 32 H 1.08998 * 117.49615 * 359.97438 * 19 18 9 33 33 H 1.09000 * 117.49893 * 145.02099 * 19 18 9 34 34 H 1.08996 * 117.50064 * 214.98205 * 20 18 9 35 35 H 1.08998 * 117.49763 * 0.02562 * 20 18 9 36 36 H 1.09000 * 109.40668 * 71.22801 * 21 5 4 37 37 H 1.09002 * 109.40309 * 190.96951 * 21 5 4 38 38 H 0.97000 * 117.94915 * 178.06419 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 6 2.0355 -0.7103 1.2564 5 6 1.7190 -2.2059 1.1357 6 1 0.6625 -2.3397 0.9027 7 6 2.0449 -2.8997 2.4332 8 8 2.4879 -2.2639 3.3663 9 7 1.8441 -4.2266 2.5568 10 6 2.1410 -4.8579 3.7371 11 1 2.6588 -5.8056 3.7271 12 6 1.7759 -4.2783 4.9460 13 7 0.8544 -3.3418 4.9739 14 14 2.5948 -4.8304 6.5315 15 1 3.5914 -5.8896 6.2312 16 1 3.2779 -3.6739 7.1647 17 1 1.5665 -5.3665 7.4592 18 6 1.3084 -4.9945 1.4301 19 6 0.9307 -6.4548 1.6863 20 6 2.1776 -6.1199 0.8653 21 6 2.5735 -2.7920 0.0092 22 6 2.4620 -1.9320 -1.2170 23 8 2.7996 -2.4043 -2.2819 24 7 2.0118 -0.6770 -1.1976 25 1 -0.3633 -1.0276 -0.0093 26 1 -0.3633 0.5058 0.8946 27 1 -0.3634 0.5219 -0.8852 28 1 3.1127 -0.5706 1.3470 29 1 1.5360 -0.3004 2.1342 30 1 0.5460 -2.9901 5.8236 31 1 0.6947 -4.4314 0.7269 32 1 1.0811 -6.8443 2.6931 33 1 0.0681 -6.8528 1.1517 34 1 2.1354 -6.2975 -0.2092 35 1 3.1478 -6.2892 1.3324 36 1 3.6148 -2.8337 0.3287 37 1 2.2265 -3.7991 -0.2221 38 1 2.0005 -0.1851 -2.0335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408200379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:47 Heat of formation + Delta-G solvation = -37.748018 kcal Electronic energy + Delta-G solvation = -21532.197176 eV Core-core repulsion = 18375.742187 eV Total energy + Delta-G solvation = -3156.454989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.40421 -38.55768 -36.78336 -35.89567 -33.17978 -32.46544 -30.96228 -30.58622 -26.88229 -25.62558 -23.61340 -22.23748 -21.64388 -21.17681 -19.33621 -18.52561 -17.06287 -16.48330 -16.14256 -15.96072 -15.02177 -14.59859 -14.38547 -14.22642 -13.85816 -13.77851 -13.23828 -12.96621 -12.76641 -12.36793 -12.03937 -11.83375 -11.38429 -11.22093 -10.97876 -10.91272 -10.83926 -10.72673 -10.60616 -10.38142 -10.16060 -9.95814 -9.71519 -9.65154 -9.00173 -8.73125 -8.01316 -7.04653 -6.14707 -3.89404 2.84607 3.27337 3.37540 3.38993 3.43367 4.03200 4.22183 4.63386 4.74779 4.80975 4.89253 5.04022 5.16789 5.24494 5.43924 5.51901 5.53662 5.60174 5.67755 5.77821 5.83440 5.87776 6.00320 6.08415 6.17761 6.23169 6.25384 6.42367 6.51507 6.59464 6.74631 6.91130 6.94033 7.48442 7.59929 8.23960 8.38955 9.02917 9.11545 9.63063 10.24739 10.94311 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.007282 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.530285 B = 3843.981552 C = 4613.743810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H 0.084 0.916 4 C -0.106 4.106 5 C -0.105 4.105 6 H 0.087 0.913 7 C 0.488 3.512 8 O -0.529 6.529 9 N -0.424 5.424 10 C -0.349 4.349 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.833 5.833 14 Si 0.911 3.089 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.286 1.286 18 C 0.072 3.928 19 C -0.175 4.175 20 C -0.207 4.207 21 C -0.131 4.131 22 C 0.525 3.475 23 O -0.567 6.567 24 N -0.716 5.716 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.263 0.737 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 3.908 -8.635 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.030 3.970 3 H 0.102 0.898 4 C -0.145 4.145 5 C -0.128 4.128 6 H 0.105 0.895 7 C 0.275 3.725 8 O -0.407 6.407 9 N -0.145 5.145 10 C -0.475 4.475 11 H 0.096 0.904 12 C -0.137 4.137 13 N -0.466 5.466 14 Si 0.739 3.261 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.212 1.212 18 C -0.034 4.034 19 C -0.213 4.213 20 C -0.246 4.246 21 C -0.171 4.171 22 C 0.313 3.687 23 O -0.447 6.447 24 N -0.367 5.367 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.346 4.056 -8.321 9.355 hybrid contribution 0.070 -0.061 0.506 0.514 sum -1.276 3.996 -7.816 8.870 Atomic orbital electron populations 1.22322 0.95181 1.02974 1.02210 1.21059 0.94334 0.96380 0.85231 0.89806 1.21669 1.02467 0.94026 0.96296 1.21382 1.00423 0.95594 0.95357 0.89518 1.19496 0.82387 0.82909 0.87684 1.90533 1.46130 1.63711 1.40292 1.42763 1.56291 1.05520 1.09889 1.18907 1.39133 1.07492 0.82001 0.90411 1.25223 0.94186 0.95217 0.99049 1.69830 1.24733 1.25712 1.26323 0.86162 0.79376 0.78379 0.82209 1.19590 1.20673 1.21214 1.21752 0.99742 0.88437 0.93503 1.23103 0.97522 0.98768 1.01922 1.23352 0.96493 1.06313 0.98480 1.21857 1.03347 1.00073 0.91774 1.20344 0.75445 0.81819 0.91044 1.90717 1.50358 1.71857 1.31750 1.45616 1.65001 1.14108 1.12014 0.91871 0.91011 0.92623 0.90799 0.88755 0.92680 0.87936 0.87441 0.89849 0.89612 0.88915 0.88054 0.87069 0.77220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.29 37.16 0.35 -1.49 16 2 C 0.13 1.58 3.82 -68.37 -0.26 1.32 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -1.66 4.14 -26.59 -0.11 -1.77 16 5 C -0.11 -1.88 1.73 -91.56 -0.16 -2.04 16 6 H 0.09 1.49 5.80 -51.92 -0.30 1.19 16 7 C 0.49 11.57 6.34 -10.99 -0.07 11.50 16 8 O -0.53 -14.65 13.62 5.55 0.08 -14.58 16 9 N -0.42 -10.12 2.85 -107.73 -0.31 -10.43 16 10 C -0.35 -9.22 7.79 -14.93 -0.12 -9.33 16 11 H 0.08 2.01 7.44 -52.49 -0.39 1.62 16 12 C 0.07 2.02 4.38 -17.47 -0.08 1.94 16 13 N -0.83 -23.81 11.70 55.50 0.65 -23.16 16 14 Si 0.91 21.48 29.59 -169.99 -5.03 16.45 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 18 C 0.07 1.39 4.38 -67.93 -0.30 1.09 16 19 C -0.18 -3.12 9.81 -26.73 -0.26 -3.38 16 20 C -0.21 -3.52 9.65 -26.73 -0.26 -3.78 16 21 C -0.13 -2.16 4.87 -28.10 -0.14 -2.30 16 22 C 0.53 8.39 7.71 -11.87 -0.09 8.30 16 23 O -0.57 -10.80 17.78 5.55 0.10 -10.71 16 24 N -0.72 -9.12 5.03 -54.85 -0.28 -9.40 16 25 H 0.06 0.77 6.55 -51.93 -0.34 0.43 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 29 H 0.09 1.60 7.88 -51.93 -0.41 1.19 16 30 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 31 H 0.10 1.80 6.11 -51.93 -0.32 1.48 16 32 H 0.11 2.12 6.85 -51.93 -0.36 1.76 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 37 H 0.11 1.83 4.97 -51.93 -0.26 1.57 16 38 H 0.39 4.31 8.80 -40.82 -0.36 3.95 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -32.70 303.60 -6.95 -39.66 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.24 Total: 7.51 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.49 Total: 0.08 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.07 Total: -42.98 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.17 Total: -25.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.70 -6.95 -39.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408200379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.907 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds