Wall clock time and date at job start Thu Apr 9 2020 13:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.29389 * 2 1 4 4 C 1.52918 * 109.29921 * 240.41966 * 2 1 3 5 5 C 1.53347 * 108.67565 * 290.64549 * 4 2 1 6 6 H 1.08995 * 109.67399 * 52.23841 * 5 4 2 7 7 C 1.50696 * 109.67447 * 172.73827 * 5 4 2 8 8 O 1.21290 * 120.00042 * 15.64459 * 7 5 4 9 9 N 1.34777 * 120.00142 * 195.92009 * 7 5 4 10 10 C 1.37092 * 120.00247 * 184.53886 * 9 7 5 11 11 H 1.08001 * 120.00013 * 333.43650 * 10 9 7 12 12 C 1.38950 * 120.00221 * 153.44025 * 10 9 7 13 13 N 1.31413 * 119.99805 * 344.28446 * 12 10 9 14 14 Si 1.86799 * 120.00353 * 164.28559 * 12 10 9 15 15 H 1.48503 * 109.47002 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47181 * 119.99714 * 14 12 10 17 17 H 1.48496 * 109.46937 * 239.99837 * 14 12 10 18 18 C 1.46496 * 119.99522 * 4.54333 * 9 7 5 19 19 C 1.53002 * 117.49946 * 135.81331 * 18 9 7 20 20 C 1.53001 * 117.50218 * 67.18845 * 18 9 7 21 21 C 1.53072 * 108.45369 * 292.48872 * 5 4 2 22 22 C 1.50191 * 109.88575 * 48.82517 * 21 5 4 23 23 O 1.21283 * 118.23299 * 162.43932 * 22 21 5 24 24 N 1.33348 * 123.52491 * 342.53208 * 22 21 5 25 25 H 1.08998 * 109.46836 * 179.58004 * 1 2 3 26 26 H 1.08998 * 109.47282 * 299.57846 * 1 2 3 27 27 H 1.09004 * 109.47014 * 59.58335 * 1 2 3 28 28 H 1.09001 * 109.60070 * 170.88802 * 4 2 1 29 29 H 1.09000 * 109.60601 * 50.40182 * 4 2 1 30 30 H 0.96999 * 120.00412 * 185.05405 * 13 12 10 31 31 H 1.08999 * 115.55024 * 281.51198 * 18 9 7 32 32 H 1.09006 * 117.50037 * 359.97438 * 19 18 9 33 33 H 1.09001 * 117.50128 * 145.01903 * 19 18 9 34 34 H 1.09004 * 117.49827 * 214.97662 * 20 18 9 35 35 H 1.08998 * 117.49554 * 0.02562 * 20 18 9 36 36 H 1.08996 * 109.40310 * 169.00998 * 21 5 4 37 37 H 1.09001 * 109.39909 * 288.75529 * 21 5 4 38 38 H 0.97006 * 117.95020 * 182.16035 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0355 -0.7125 -1.2551 5 6 1.7143 -2.2070 -1.1343 6 1 0.6571 -2.3377 -0.9036 7 6 2.0404 -2.9025 -2.4309 8 8 2.7380 -2.3513 -3.2559 9 7 1.5523 -4.1346 -2.6760 10 6 1.9234 -4.8053 -3.8126 11 1 2.2271 -4.2539 -4.6902 12 6 1.9087 -6.1945 -3.8357 13 7 1.8448 -6.8697 -2.7100 14 14 1.9798 -7.1025 -5.4666 15 1 2.0459 -6.1196 -6.5778 16 1 3.1857 -7.9686 -5.4988 17 1 0.7639 -7.9410 -5.6197 18 6 0.6250 -4.7570 -1.7279 19 6 -0.6042 -5.4640 -2.3026 20 6 -0.7606 -4.1260 -1.5771 21 6 2.5647 -2.7957 -0.0058 22 6 2.4548 -1.9340 1.2194 23 8 2.7890 -2.4067 2.2851 24 7 2.0078 -0.6778 1.1986 25 1 -0.3633 -1.0276 -0.0075 26 1 -0.3634 0.5073 0.8937 27 1 -0.3633 0.5203 -0.8863 28 1 3.1132 -0.5760 -1.3441 29 1 1.5386 -0.3016 -2.1340 30 1 1.9084 -7.8375 -2.7207 31 1 1.0821 -5.1866 -0.8365 32 1 -0.7232 -5.4656 -3.3862 33 1 -0.9559 -6.3589 -1.7893 34 1 -1.2153 -4.1408 -0.5865 35 1 -0.9824 -3.2480 -2.1837 36 1 2.2137 -3.8014 0.2252 37 1 3.6064 -2.8410 -0.3233 38 1 2.0005 -0.1839 2.0335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408200380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:49 Heat of formation + Delta-G solvation = -45.377779 kcal Electronic energy + Delta-G solvation = -21492.807786 eV Core-core repulsion = 18336.021945 eV Total energy + Delta-G solvation = -3156.785840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42128 -38.69955 -36.76441 -36.00446 -33.19698 -32.57648 -31.15146 -30.75200 -26.94351 -25.74820 -23.68195 -22.24055 -21.61433 -21.39695 -18.96196 -18.53765 -16.92129 -16.84859 -16.18182 -16.02045 -15.12574 -14.85093 -14.40247 -14.17234 -14.01527 -13.82670 -13.37609 -13.20340 -12.73517 -12.49332 -12.09814 -11.88368 -11.43455 -11.39680 -11.15136 -11.07512 -10.76003 -10.64705 -10.55225 -10.47147 -10.32212 -9.80266 -9.72651 -9.41986 -9.01504 -8.87930 -8.32589 -7.68389 -6.33865 -3.89797 2.85849 3.12777 3.24529 3.30169 3.40963 3.78253 4.07659 4.57779 4.62556 4.76404 4.86527 4.96000 5.11276 5.12914 5.37739 5.47836 5.55346 5.62974 5.72876 5.78343 5.84051 5.94278 6.02401 6.08727 6.14560 6.19005 6.24862 6.37302 6.53361 6.69404 6.86699 6.91020 7.09760 7.47471 7.58033 8.12946 8.39738 8.45887 9.15762 9.39292 9.94636 10.72711 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026765 B = 0.006239 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.880566 B = 4486.875645 C = 4568.045869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.136 3.864 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.105 4.105 6 H 0.095 0.905 7 C 0.462 3.538 8 O -0.584 6.584 9 N -0.416 5.416 10 C -0.319 4.319 11 H 0.097 0.903 12 C 0.044 3.956 13 N -0.865 5.865 14 Si 0.916 3.084 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.280 1.280 18 C 0.126 3.874 19 C -0.138 4.138 20 C -0.226 4.226 21 C -0.121 4.121 22 C 0.528 3.472 23 O -0.564 6.564 24 N -0.717 5.717 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 9.104 5.073 11.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 H 0.102 0.898 4 C -0.147 4.147 5 C -0.127 4.127 6 H 0.113 0.887 7 C 0.250 3.750 8 O -0.468 6.468 9 N -0.134 5.134 10 C -0.446 4.446 11 H 0.115 0.885 12 C -0.162 4.162 13 N -0.502 5.502 14 Si 0.743 3.257 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.206 1.206 18 C 0.021 3.979 19 C -0.175 4.175 20 C -0.264 4.264 21 C -0.161 4.161 22 C 0.316 3.684 23 O -0.443 6.443 24 N -0.368 5.368 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.008 8.755 5.020 11.267 hybrid contribution -0.080 -0.531 -0.435 0.691 sum -5.087 8.225 4.585 10.703 Atomic orbital electron populations 1.22343 0.95235 1.03104 1.02160 1.21038 0.94303 0.96342 0.85244 0.89761 1.21697 1.02790 0.94073 0.96126 1.21380 1.01336 0.95066 0.94904 0.88686 1.19764 0.83508 0.83685 0.88065 1.90522 1.42003 1.65920 1.48354 1.43062 1.37127 1.13482 1.19696 1.19554 1.45215 0.88843 0.90977 0.88493 1.25251 0.96231 0.96779 0.97892 1.69887 1.47009 1.07845 1.25491 0.86026 0.77817 0.79426 0.82459 1.19291 1.20753 1.20631 1.21083 0.83293 0.98603 0.94960 1.22703 1.01387 0.93381 1.00059 1.23557 1.02959 0.98288 1.01604 1.21566 1.03211 0.99822 0.91539 1.20276 0.75396 0.81792 0.90966 1.90726 1.50162 1.71844 1.31596 1.45592 1.65348 1.13941 1.11969 0.91663 0.92496 0.91221 0.90400 0.89453 0.92226 0.87788 0.89006 0.89678 0.89501 0.89641 0.87553 0.87957 0.77148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.30 37.16 0.35 -1.30 16 2 C 0.14 1.48 3.84 -68.37 -0.26 1.22 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.56 4.07 -26.59 -0.11 -1.67 16 5 C -0.11 -1.80 1.81 -91.56 -0.17 -1.97 16 6 H 0.10 1.52 4.13 -51.93 -0.21 1.30 16 7 C 0.46 10.51 6.74 -10.99 -0.07 10.44 16 8 O -0.58 -15.23 15.86 5.55 0.09 -15.14 16 9 N -0.42 -10.00 2.91 -107.73 -0.31 -10.31 16 10 C -0.32 -8.50 8.77 -14.94 -0.13 -8.63 16 11 H 0.10 2.75 7.47 -52.49 -0.39 2.36 16 12 C 0.04 1.11 4.40 -17.47 -0.08 1.04 16 13 N -0.87 -22.12 11.01 55.50 0.61 -21.51 16 14 Si 0.92 20.18 29.58 -169.99 -5.03 15.15 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.13 2.65 3.01 -67.93 -0.20 2.44 16 19 C -0.14 -2.72 8.49 -26.73 -0.23 -2.95 16 20 C -0.23 -3.86 8.57 -26.73 -0.23 -4.09 16 21 C -0.12 -2.10 5.23 -28.09 -0.15 -2.25 16 22 C 0.53 8.61 7.71 -11.87 -0.09 8.51 16 23 O -0.56 -11.10 17.78 5.55 0.10 -11.00 16 24 N -0.72 -8.96 5.02 -54.85 -0.28 -9.24 16 25 H 0.06 0.72 6.50 -51.93 -0.34 0.39 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 29 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 31 H 0.10 2.27 7.14 -51.93 -0.37 1.90 16 32 H 0.09 1.96 7.69 -51.93 -0.40 1.56 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.45 8.10 -51.93 -0.42 1.03 16 36 H 0.11 1.93 6.70 -51.93 -0.35 1.59 16 37 H 0.10 1.87 8.09 -51.93 -0.42 1.45 16 38 H 0.39 4.23 8.80 -40.82 -0.36 3.87 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -30.94 305.30 -6.94 -37.89 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.35 Total: 8.78 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.37 Total: 0.79 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.02 Total: -41.06 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: 0.19 Total: -26.15 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.94 -6.94 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408200380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.492 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds