Wall clock time and date at job start Thu Apr 9 2020 13:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.29389 * 2 1 4 4 C 1.52918 * 109.29921 * 240.41966 * 2 1 3 5 5 C 1.53347 * 108.67565 * 290.64549 * 4 2 1 6 6 H 1.08995 * 109.67399 * 52.23841 * 5 4 2 7 7 C 1.50696 * 109.67447 * 172.73827 * 5 4 2 8 8 O 1.21290 * 120.00042 * 15.64459 * 7 5 4 9 9 N 1.34777 * 120.00142 * 195.92009 * 7 5 4 10 10 C 1.37092 * 120.00247 * 184.53886 * 9 7 5 11 11 H 1.08001 * 120.00013 * 333.43650 * 10 9 7 12 12 C 1.38950 * 120.00221 * 153.44025 * 10 9 7 13 13 N 1.31413 * 119.99805 * 344.28446 * 12 10 9 14 14 Si 1.86799 * 120.00353 * 164.28559 * 12 10 9 15 15 H 1.48503 * 109.47002 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47181 * 119.99714 * 14 12 10 17 17 H 1.48496 * 109.46937 * 239.99837 * 14 12 10 18 18 C 1.46496 * 119.99522 * 4.54333 * 9 7 5 19 19 C 1.53002 * 117.49946 * 135.81331 * 18 9 7 20 20 C 1.53001 * 117.50218 * 67.18845 * 18 9 7 21 21 C 1.53072 * 108.45369 * 292.48872 * 5 4 2 22 22 C 1.50191 * 109.88575 * 48.82517 * 21 5 4 23 23 O 1.21283 * 118.23299 * 162.43932 * 22 21 5 24 24 N 1.33348 * 123.52491 * 342.53208 * 22 21 5 25 25 H 1.08998 * 109.46836 * 179.58004 * 1 2 3 26 26 H 1.08998 * 109.47282 * 299.57846 * 1 2 3 27 27 H 1.09004 * 109.47014 * 59.58335 * 1 2 3 28 28 H 1.09001 * 109.60070 * 170.88802 * 4 2 1 29 29 H 1.09000 * 109.60601 * 50.40182 * 4 2 1 30 30 H 0.96999 * 120.00412 * 185.05405 * 13 12 10 31 31 H 1.08999 * 115.55024 * 281.51198 * 18 9 7 32 32 H 1.09006 * 117.50037 * 359.97438 * 19 18 9 33 33 H 1.09001 * 117.50128 * 145.01903 * 19 18 9 34 34 H 1.09004 * 117.49827 * 214.97662 * 20 18 9 35 35 H 1.08998 * 117.49554 * 0.02562 * 20 18 9 36 36 H 1.08996 * 109.40310 * 169.00998 * 21 5 4 37 37 H 1.09001 * 109.39909 * 288.75529 * 21 5 4 38 38 H 0.97006 * 117.95020 * 182.16035 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0355 -0.7125 -1.2551 5 6 1.7143 -2.2070 -1.1343 6 1 0.6571 -2.3377 -0.9036 7 6 2.0404 -2.9025 -2.4309 8 8 2.7380 -2.3513 -3.2559 9 7 1.5523 -4.1346 -2.6760 10 6 1.9234 -4.8053 -3.8126 11 1 2.2271 -4.2539 -4.6902 12 6 1.9087 -6.1945 -3.8357 13 7 1.8448 -6.8697 -2.7100 14 14 1.9798 -7.1025 -5.4666 15 1 2.0459 -6.1196 -6.5778 16 1 3.1857 -7.9686 -5.4988 17 1 0.7639 -7.9410 -5.6197 18 6 0.6250 -4.7570 -1.7279 19 6 -0.6042 -5.4640 -2.3026 20 6 -0.7606 -4.1260 -1.5771 21 6 2.5647 -2.7957 -0.0058 22 6 2.4548 -1.9340 1.2194 23 8 2.7890 -2.4067 2.2851 24 7 2.0078 -0.6778 1.1986 25 1 -0.3633 -1.0276 -0.0075 26 1 -0.3634 0.5073 0.8937 27 1 -0.3633 0.5203 -0.8863 28 1 3.1132 -0.5760 -1.3441 29 1 1.5386 -0.3016 -2.1340 30 1 1.9084 -7.8375 -2.7207 31 1 1.0821 -5.1866 -0.8365 32 1 -0.7232 -5.4656 -3.3862 33 1 -0.9559 -6.3589 -1.7893 34 1 -1.2153 -4.1408 -0.5865 35 1 -0.9824 -3.2480 -2.1837 36 1 2.2137 -3.8014 0.2252 37 1 3.6064 -2.8410 -0.3233 38 1 2.0005 -0.1839 2.0335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408200380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:48 Heat of formation + Delta-G solvation = -66.544167 kcal Electronic energy + Delta-G solvation = -21493.725629 eV Core-core repulsion = 18336.021945 eV Total energy + Delta-G solvation = -3157.703684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77389 -40.34024 -38.19694 -37.56085 -34.94962 -34.06181 -32.95913 -31.90025 -28.06732 -27.53103 -25.18050 -23.40833 -23.16543 -23.00716 -20.62936 -19.75806 -18.74220 -18.16310 -17.75881 -17.27478 -16.91808 -16.25417 -15.97516 -15.85769 -15.43757 -15.06346 -14.84441 -14.54787 -14.27205 -13.85726 -13.51173 -13.16957 -13.00990 -12.88130 -12.70878 -12.45277 -12.25758 -12.24658 -12.13775 -11.89110 -11.79685 -11.46910 -11.21536 -10.96574 -10.65630 -10.12944 -10.09551 -9.58471 -8.29209 -5.92740 1.34515 1.41389 1.52880 1.54754 1.98655 2.27369 2.31866 2.91725 3.00842 3.20887 3.54982 3.73220 3.76506 3.84615 4.16782 4.23060 4.25017 4.28689 4.37401 4.46720 4.63631 4.69964 4.78811 4.81060 4.99099 5.02128 5.08104 5.13408 5.23560 5.36986 5.43538 5.47180 5.53140 5.89308 6.15584 6.28850 6.54752 7.19411 7.21567 7.52108 8.08100 8.75089 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026765 B = 0.006239 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.880566 B = 4486.875645 C = 4568.045869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 H 0.122 0.878 4 C -0.108 4.108 5 C -0.089 4.089 6 H 0.113 0.887 7 C 0.451 3.549 8 O -0.627 6.627 9 N -0.427 5.427 10 C -0.351 4.351 11 H 0.067 0.933 12 C 0.017 3.983 13 N -0.877 5.877 14 Si 0.972 3.028 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.101 3.899 19 C -0.145 4.145 20 C -0.182 4.182 21 C -0.118 4.118 22 C 0.534 3.466 23 O -0.601 6.601 24 N -0.698 5.698 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.271 0.729 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 10.413 6.141 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.037 3.963 3 H 0.140 0.860 4 C -0.146 4.146 5 C -0.110 4.110 6 H 0.131 0.869 7 C 0.241 3.759 8 O -0.514 6.514 9 N -0.145 5.145 10 C -0.479 4.479 11 H 0.085 0.915 12 C -0.187 4.187 13 N -0.513 5.513 14 Si 0.796 3.204 15 H -0.200 1.200 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.004 4.004 19 C -0.183 4.183 20 C -0.220 4.220 21 C -0.159 4.159 22 C 0.322 3.678 23 O -0.483 6.483 24 N -0.349 5.349 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.831 10.093 6.104 13.631 hybrid contribution 0.508 -0.920 -0.808 1.325 sum -6.324 9.173 5.297 12.337 Atomic orbital electron populations 1.22341 0.93502 1.02799 1.04025 1.21208 0.95510 0.97109 0.82431 0.85985 1.21718 1.02181 0.92281 0.98467 1.21279 1.02126 0.96268 0.91363 0.86906 1.20737 0.82444 0.83369 0.89351 1.90479 1.43714 1.66963 1.50254 1.43247 1.37901 1.13835 1.19493 1.19435 1.47280 0.89633 0.91527 0.91503 1.25822 0.95412 0.96777 1.00697 1.69959 1.46610 1.08116 1.26656 0.85201 0.78219 0.78098 0.78834 1.20005 1.20477 1.19162 1.21065 0.84009 1.01031 0.94247 1.22658 1.01033 0.95442 0.99156 1.23602 0.98683 0.96786 1.02899 1.21445 1.02137 0.99895 0.92378 1.19895 0.75604 0.82759 0.89575 1.90715 1.52222 1.72968 1.32429 1.45468 1.63492 1.12524 1.13376 0.93014 0.90307 0.89794 0.91887 0.89185 0.91884 0.89044 0.91136 0.88715 0.85852 0.89031 0.88803 0.89750 0.75398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.30 71.98 0.67 -1.85 16 2 C 0.14 2.56 3.84 45.11 0.17 2.73 16 3 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.11 -2.95 4.07 30.68 0.12 -2.82 16 5 C -0.09 -3.01 1.81 -11.40 -0.02 -3.03 16 6 H 0.11 3.39 4.13 -2.39 -0.01 3.38 16 7 C 0.45 21.10 6.74 87.66 0.59 21.69 16 8 O -0.63 -34.06 15.86 -3.06 -0.05 -34.11 16 9 N -0.43 -21.14 2.91 -613.15 -1.79 -22.93 16 10 C -0.35 -19.48 8.77 84.04 0.74 -18.74 16 11 H 0.07 4.02 7.47 -2.91 -0.02 4.00 16 12 C 0.02 0.89 4.40 84.93 0.37 1.27 16 13 N -0.88 -45.33 11.01 21.66 0.24 -45.10 16 14 Si 0.97 41.97 29.58 68.60 2.03 44.00 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 C 0.10 4.25 3.01 44.99 0.14 4.39 16 19 C -0.15 -5.64 8.49 30.60 0.26 -5.38 16 20 C -0.18 -5.80 8.57 30.60 0.26 -5.54 16 21 C -0.12 -4.13 5.23 29.71 0.16 -3.97 16 22 C 0.53 16.78 7.71 87.72 0.68 17.46 16 23 O -0.60 -23.24 17.78 -3.04 -0.05 -23.29 16 24 N -0.70 -15.36 5.02 -446.62 -2.24 -17.60 16 25 H 0.05 0.93 6.50 -2.39 -0.02 0.92 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 29 H 0.09 2.44 8.10 -2.39 -0.02 2.42 16 30 H 0.27 13.29 8.32 -92.71 -0.77 12.51 16 31 H 0.09 4.05 7.14 -2.39 -0.02 4.03 16 32 H 0.07 3.03 7.69 -2.38 -0.02 3.01 16 33 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 35 H 0.09 2.85 8.10 -2.39 -0.02 2.83 16 36 H 0.09 3.50 6.70 -2.39 -0.02 3.48 16 37 H 0.08 3.22 8.09 -2.39 -0.02 3.20 16 38 H 0.41 7.28 8.80 -92.70 -0.82 6.46 16 Total: -1.00 -70.08 305.30 2.53 -67.55 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.26 Total: 25.28 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 4.14 Total: 6.21 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.79 Total: -85.63 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -0.10 Total: -57.40 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -70.08 2.53 -67.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408200380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.004 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds