Wall clock time and date at job start Thu Apr 9 2020 13:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.34518 * 125.78983 * 89.71495 * 6 5 4 8 8 C 1.41378 * 106.84364 * 179.89403 * 7 6 5 9 9 C 1.34522 * 106.83917 * 0.37066 * 8 7 6 10 10 O 1.34302 * 108.41941 * 359.77436 * 9 8 7 11 11 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 12 12 C 1.34775 * 119.99962 * 85.00055 * 11 2 1 13 13 O 1.21587 * 119.99912 * 0.02562 * 12 11 2 14 14 N 1.34780 * 119.99894 * 179.97438 * 12 11 2 15 15 C 1.46502 * 119.99520 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46715 * 180.02562 * 15 14 12 17 17 H 1.08006 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00014 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00024 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00178 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47431 * 90.00020 * 20 18 16 22 22 H 1.48499 * 109.47106 * 210.00578 * 20 18 16 23 23 H 1.48506 * 109.47020 * 330.00070 * 20 18 16 24 24 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 26 26 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 27 27 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 28 28 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 31 31 H 1.08002 * 126.57753 * 0.02827 * 7 6 5 32 32 H 1.07997 * 126.58088 * 180.16594 * 8 7 6 33 33 H 1.07992 * 125.79127 * 179.79596 * 9 8 7 34 34 H 0.96998 * 119.99659 * 264.99982 * 11 2 1 35 35 H 0.96998 * 119.99727 * 0.02562 * 14 12 11 36 36 H 1.08993 * 109.47669 * 300.00256 * 15 14 12 37 37 H 1.09000 * 109.47236 * 60.00947 * 15 14 12 38 38 H 0.97000 * 120.00101 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5440 7 6 4.4141 -2.6217 2.6162 8 6 4.8266 -2.8620 3.9469 9 6 4.6994 -1.6988 4.6104 10 8 4.2390 -0.7708 3.7557 11 7 2.0184 -0.6906 -1.1961 12 6 2.1471 -0.0183 -2.3571 13 8 1.8584 1.1615 -2.4116 14 7 2.5969 -0.6536 -3.4574 15 6 2.7362 0.0772 -4.7195 16 6 3.2528 -0.8549 -5.7851 17 1 3.4566 -1.8883 -5.5462 18 6 3.4654 -0.3884 -7.0650 19 7 3.9158 -1.2019 -7.9951 20 14 3.1125 1.3987 -7.4784 21 1 4.3336 2.2111 -7.2461 22 1 2.7096 1.5069 -8.9036 23 1 2.0133 1.8990 -6.6141 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2616 2.1370 28 1 1.7517 -1.7715 1.2057 29 1 3.9995 -1.0727 0.4261 30 1 3.8532 0.4370 1.3574 31 1 4.3852 -3.3413 1.8113 32 1 5.1738 -3.8003 4.3536 33 1 4.9289 -1.5383 5.6534 34 1 2.2491 -1.6318 -1.1525 35 1 2.8275 -1.5947 -3.4138 36 1 1.7654 0.4704 -5.0208 37 1 3.4369 0.9015 -4.5866 38 1 4.0651 -0.8738 -8.8956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426453077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:09:52 Heat of formation + Delta-G solvation = -31.593173 kcal Electronic energy + Delta-G solvation = -19482.196268 eV Core-core repulsion = 16326.008173 eV Total energy + Delta-G solvation = -3156.188095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.73470 -39.52488 -36.67950 -34.19355 -33.44342 -32.77348 -32.29180 -30.56426 -28.12628 -27.53633 -24.22257 -22.43077 -21.93849 -20.91125 -20.50168 -20.24651 -18.28378 -17.51754 -16.38892 -16.31110 -16.01353 -15.01049 -14.79973 -14.65483 -14.05958 -14.03434 -13.70809 -13.13829 -13.02798 -13.00164 -12.75880 -12.45848 -12.35630 -12.12472 -12.00906 -11.49765 -11.31237 -10.96475 -10.82285 -10.73903 -10.10724 -9.94362 -9.55475 -9.42930 -8.87748 -8.73988 -8.59930 -7.99108 -6.19051 -4.20792 1.54297 2.43033 2.81011 3.26392 3.30497 3.37682 3.45235 3.83762 4.36124 4.36477 4.74857 4.76917 4.82263 4.90266 4.95389 5.10486 5.16700 5.34623 5.42027 5.51505 5.57695 5.63153 5.74548 5.81314 5.83267 5.98561 6.08689 6.28770 6.32417 6.77283 6.84971 6.95887 7.14368 7.27429 7.43961 7.60780 8.30771 8.71944 8.84483 9.24732 9.43035 10.92977 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.003437 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.503672 B = 8145.289795 C = 8724.497446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.162 3.838 3 H 0.089 0.911 4 C -0.121 4.121 5 C -0.042 4.042 6 C -0.003 4.003 7 C -0.214 4.214 8 C -0.213 4.213 9 C -0.050 4.050 10 O -0.177 6.177 11 N -0.751 5.751 12 C 0.695 3.305 13 O -0.603 6.603 14 N -0.724 5.724 15 C 0.239 3.761 16 C -0.542 4.542 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.200 0.800 34 H 0.392 0.608 35 H 0.392 0.608 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 -2.761 23.870 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.107 0.893 4 C -0.159 4.159 5 C -0.079 4.079 6 C -0.054 4.054 7 C -0.233 4.233 8 C -0.232 4.232 9 C -0.117 4.117 10 O -0.073 6.073 11 N -0.408 5.408 12 C 0.395 3.605 13 O -0.483 6.483 14 N -0.376 5.376 15 C 0.116 3.884 16 C -0.580 4.580 17 H 0.097 0.903 18 C -0.127 4.127 19 N -0.532 5.532 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.184 1.184 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.217 0.783 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.818 -1.356 23.633 23.742 hybrid contribution 0.247 -0.425 -0.230 0.543 sum -1.571 -1.782 23.404 23.524 Atomic orbital electron populations 1.22195 0.95587 1.01927 1.02489 1.20697 0.93723 0.97329 0.82630 0.89323 1.21921 0.93971 1.01876 0.98123 1.20209 0.95842 1.01153 0.90746 1.22578 1.03802 0.93149 0.85828 1.21631 1.07324 0.96110 0.98273 1.21848 1.07230 0.99519 0.94617 1.23995 1.04118 0.87601 0.96018 1.84025 1.65391 1.39161 1.18742 1.45259 1.73059 1.13365 1.09159 1.16134 0.78738 0.85233 0.80436 1.90859 1.58014 1.14657 1.84769 1.45405 1.68753 1.13788 1.09639 1.19341 0.96580 0.92684 0.79813 1.21104 1.45480 0.97923 0.93455 0.90332 1.24786 0.94019 0.97990 0.95871 1.69885 1.44749 1.35549 1.02968 0.86808 0.79838 0.85066 0.77928 1.19869 1.20977 1.18422 0.92686 0.92090 0.91640 0.90119 0.90876 0.88371 0.89766 0.83437 0.83600 0.78316 0.77498 0.77523 0.95974 0.96401 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.48 16 2 C 0.16 1.88 2.57 -67.93 -0.17 1.71 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 4 C -0.12 -1.06 4.74 -26.73 -0.13 -1.19 16 5 C -0.04 -0.40 5.63 -27.89 -0.16 -0.56 16 6 C 0.00 -0.04 6.58 -35.63 -0.23 -0.27 16 7 C -0.21 -2.13 10.81 -39.70 -0.43 -2.56 16 8 C -0.21 -1.91 10.91 -39.70 -0.43 -2.34 16 9 C -0.05 -0.43 12.09 29.42 0.36 -0.07 16 10 O -0.18 -1.92 10.65 5.71 0.06 -1.86 16 11 N -0.75 -10.09 4.53 -58.67 -0.27 -10.35 16 12 C 0.69 13.30 8.53 -86.92 -0.74 12.56 16 13 O -0.60 -13.99 16.01 5.29 0.08 -13.90 16 14 N -0.72 -14.71 5.55 -66.41 -0.37 -15.08 16 15 C 0.24 5.93 4.50 -5.19 -0.02 5.91 16 16 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 17 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 20 Si 0.88 21.60 27.47 -169.99 -4.67 16.94 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.93 7.75 -51.93 -0.40 0.53 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.39 4.18 8.62 -40.82 -0.35 3.83 16 35 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 36 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -33.68 326.29 -7.15 -40.83 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.64 Total: 5.84 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.05 Total: -1.46 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.14 Total: -51.31 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.15 Total: -15.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.68 -7.15 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.238 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds