Wall clock time and date at job start Thu Apr 9 2020 13:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79060 * 90.00255 * 6 5 4 8 8 C 1.41380 * 106.83832 * 179.97438 * 7 6 5 9 9 C 1.34506 * 106.84493 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78568 * 269.69593 * 6 5 4 11 11 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 12 12 C 1.34774 * 120.00144 * 275.00142 * 11 2 1 13 13 O 1.21590 * 120.00141 * 359.97438 * 12 11 2 14 14 N 1.34776 * 120.00371 * 180.02562 * 12 11 2 15 15 C 1.46505 * 120.00416 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47351 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99856 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99694 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00280 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99542 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46931 * 90.00492 * 20 18 16 22 22 H 1.48505 * 109.47114 * 209.99953 * 20 18 16 23 23 H 1.48496 * 109.47583 * 330.00532 * 20 18 16 24 24 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 26 26 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 27 27 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 28 28 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 31 31 H 1.07996 * 126.58016 * 0.03378 * 7 6 5 32 32 H 1.08006 * 126.57610 * 179.97438 * 8 7 6 33 33 H 1.08006 * 125.79583 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00062 * 94.99942 * 11 2 1 35 35 H 0.97001 * 119.99835 * 359.97438 * 14 12 11 36 36 H 1.09011 * 109.46387 * 299.99652 * 15 14 12 37 37 H 1.08999 * 109.46965 * 59.99240 * 15 14 12 38 38 H 0.97003 * 119.99824 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 6 4.2398 -0.7685 -3.7573 8 6 4.7237 -1.7879 -4.6090 9 6 4.8185 -2.9047 -3.8654 10 8 4.4239 -2.6164 -2.6144 11 7 2.0183 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3572 13 8 1.8582 1.1617 2.4116 14 7 2.5966 -0.6533 3.4576 15 6 2.7360 0.0775 4.7197 16 6 3.2525 -0.8545 5.7854 17 1 3.4562 -1.8878 5.5466 18 6 3.4650 -0.3878 7.0652 19 7 3.2165 0.8705 7.3561 20 14 4.1047 -1.5432 8.3864 21 1 5.5894 -1.5116 8.3950 22 1 3.5927 -1.1113 9.7118 23 1 3.6406 -2.9249 8.1027 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6054 -0.2619 -2.1369 28 1 1.7516 -1.7716 -1.2054 29 1 3.8532 0.4368 -1.3572 30 1 3.9995 -1.0729 -0.4258 31 1 4.0467 0.2589 -4.0284 32 1 4.9701 -1.6889 -5.6559 33 1 5.1573 -3.8691 -4.2143 34 1 2.2489 -1.6317 1.1528 35 1 2.8273 -1.5945 3.4141 36 1 3.4366 0.9019 4.5867 37 1 1.7650 0.4708 5.0209 38 1 3.3657 1.1986 8.2567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426453078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:05 Heat of formation + Delta-G solvation = -35.142077 kcal Electronic energy + Delta-G solvation = -19433.252856 eV Core-core repulsion = 16276.910869 eV Total energy + Delta-G solvation = -3156.341987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.71617 -39.37450 -36.56856 -34.06842 -33.41596 -32.70931 -32.24282 -30.39604 -28.08777 -26.92260 -24.17997 -22.74646 -21.91970 -20.92016 -20.48646 -20.09748 -18.10621 -17.48543 -16.32391 -15.95949 -15.94174 -15.02426 -14.83941 -14.46285 -14.12271 -13.89597 -13.50336 -13.18287 -13.00362 -12.93720 -12.70498 -12.34359 -12.06045 -11.92560 -11.80913 -11.45318 -11.13161 -10.93965 -10.86651 -10.78365 -10.27375 -10.09843 -9.35057 -9.33501 -8.77551 -8.68016 -8.55678 -7.71945 -6.12907 -4.19222 1.56404 2.43833 2.83617 3.26498 3.31636 3.34222 3.44472 4.00097 4.35196 4.39306 4.76606 4.82609 4.87101 4.94023 5.03663 5.18278 5.23217 5.41957 5.47324 5.58183 5.59708 5.64391 5.78853 5.84004 5.87299 6.00810 6.16414 6.33358 6.36317 6.96081 6.98341 7.17103 7.56006 7.59248 7.60778 7.94974 8.08389 8.80140 8.99448 9.37925 9.52327 10.97378 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.003391 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.442449 B = 8255.828084 C = 9058.597821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.162 3.838 3 H 0.089 0.911 4 C -0.120 4.120 5 C -0.043 4.043 6 C -0.001 4.001 7 C -0.217 4.217 8 C -0.214 4.214 9 C -0.049 4.049 10 O -0.176 6.176 11 N -0.754 5.754 12 C 0.693 3.307 13 O -0.601 6.601 14 N -0.731 5.731 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.200 0.800 34 H 0.390 0.610 35 H 0.386 0.614 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -7.035 -22.388 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.107 0.893 4 C -0.159 4.159 5 C -0.080 4.080 6 C -0.052 4.052 7 C -0.236 4.236 8 C -0.233 4.233 9 C -0.116 4.116 10 O -0.072 6.072 11 N -0.411 5.411 12 C 0.393 3.607 13 O -0.481 6.481 14 N -0.383 5.383 15 C 0.146 3.854 16 C -0.580 4.580 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.217 0.783 34 H 0.223 0.777 35 H 0.218 0.782 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.118 -5.964 -21.878 22.676 hybrid contribution 0.653 -1.408 0.402 1.603 sum 0.536 -7.372 -21.475 22.712 Atomic orbital electron populations 1.22194 0.95672 1.01831 1.02478 1.20665 0.93662 0.97320 0.82717 0.89341 1.21919 0.93894 1.01834 0.98212 1.20218 0.95780 0.99604 0.92403 1.22602 1.02701 0.81912 0.97940 1.21608 1.07940 1.01101 0.92970 1.21829 1.07024 0.93274 1.01208 1.24004 1.04978 1.00758 0.81886 1.84041 1.64432 1.27455 1.31231 1.45300 1.73272 1.13276 1.09249 1.16166 0.78873 0.85295 0.80392 1.90865 1.57887 1.14614 1.84684 1.45728 1.68631 1.13576 1.10326 1.18959 0.97164 0.91960 0.77294 1.21237 1.45646 0.96532 0.94546 0.91983 1.24943 0.95288 0.95312 0.98505 1.69980 1.47408 1.14139 1.20812 0.86422 0.79030 0.80705 0.80764 1.20495 1.21035 1.19787 0.92799 0.91594 0.92149 0.90066 0.91079 0.88543 0.89534 0.83535 0.83651 0.78313 0.77688 0.78231 0.95795 0.95813 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 37.16 0.35 -1.58 16 2 C 0.16 1.99 2.58 -67.93 -0.17 1.82 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 C -0.12 -1.11 4.74 -26.73 -0.13 -1.24 16 5 C -0.04 -0.42 5.64 -27.88 -0.16 -0.58 16 6 C 0.00 -0.01 6.57 -35.62 -0.23 -0.25 16 7 C -0.22 -2.15 10.81 -39.70 -0.43 -2.58 16 8 C -0.21 -1.93 10.91 -39.71 -0.43 -2.36 16 9 C -0.05 -0.43 12.09 29.41 0.36 -0.07 16 10 O -0.18 -1.97 10.65 5.68 0.06 -1.91 16 11 N -0.75 -10.86 4.53 -58.68 -0.27 -11.13 16 12 C 0.69 14.11 8.53 -86.92 -0.74 13.37 16 13 O -0.60 -14.83 16.01 5.29 0.08 -14.75 16 14 N -0.73 -15.67 5.55 -66.41 -0.37 -16.04 16 15 C 0.27 7.21 5.43 -5.19 -0.03 7.19 16 16 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.93 7.75 -51.93 -0.40 0.52 16 31 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.20 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.39 4.60 8.62 -40.82 -0.35 4.25 16 35 H 0.39 7.10 8.34 -40.82 -0.34 6.76 16 36 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 329.89 15.07 4.97 4.97 Total: -1.00 -33.75 329.89 -7.51 -41.26 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.67 Total: 7.01 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.03 Total: 0.21 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.10 Total: -52.79 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.15 Total: -16.66 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.75 -7.51 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.113 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds