Wall clock time and date at job start Thu Apr 9 2020 13:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79060 * 90.00255 * 6 5 4 8 8 C 1.41380 * 106.83832 * 179.97438 * 7 6 5 9 9 C 1.34506 * 106.84493 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78568 * 269.69593 * 6 5 4 11 11 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 12 12 C 1.34774 * 120.00144 * 275.00142 * 11 2 1 13 13 O 1.21590 * 120.00141 * 359.97438 * 12 11 2 14 14 N 1.34776 * 120.00371 * 180.02562 * 12 11 2 15 15 C 1.46505 * 120.00416 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47351 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99856 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99694 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00280 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99542 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46931 * 90.00492 * 20 18 16 22 22 H 1.48505 * 109.47114 * 209.99953 * 20 18 16 23 23 H 1.48496 * 109.47583 * 330.00532 * 20 18 16 24 24 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 26 26 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 27 27 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 28 28 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 31 31 H 1.07996 * 126.58016 * 0.03378 * 7 6 5 32 32 H 1.08006 * 126.57610 * 179.97438 * 8 7 6 33 33 H 1.08006 * 125.79583 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00062 * 94.99942 * 11 2 1 35 35 H 0.97001 * 119.99835 * 359.97438 * 14 12 11 36 36 H 1.09011 * 109.46387 * 299.99652 * 15 14 12 37 37 H 1.08999 * 109.46965 * 59.99240 * 15 14 12 38 38 H 0.97003 * 119.99824 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 6 4.2398 -0.7685 -3.7573 8 6 4.7237 -1.7879 -4.6090 9 6 4.8185 -2.9047 -3.8654 10 8 4.4239 -2.6164 -2.6144 11 7 2.0183 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3572 13 8 1.8582 1.1617 2.4116 14 7 2.5966 -0.6533 3.4576 15 6 2.7360 0.0775 4.7197 16 6 3.2525 -0.8545 5.7854 17 1 3.4562 -1.8878 5.5466 18 6 3.4650 -0.3878 7.0652 19 7 3.2165 0.8705 7.3561 20 14 4.1047 -1.5432 8.3864 21 1 5.5894 -1.5116 8.3950 22 1 3.5927 -1.1113 9.7118 23 1 3.6406 -2.9249 8.1027 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6054 -0.2619 -2.1369 28 1 1.7516 -1.7716 -1.2054 29 1 3.8532 0.4368 -1.3572 30 1 3.9995 -1.0729 -0.4258 31 1 4.0467 0.2589 -4.0284 32 1 4.9701 -1.6889 -5.6559 33 1 5.1573 -3.8691 -4.2143 34 1 2.2489 -1.6317 1.1528 35 1 2.8273 -1.5945 3.4141 36 1 3.4366 0.9019 4.5867 37 1 1.7650 0.4708 5.0209 38 1 3.3657 1.1986 8.2567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426453078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:03 Heat of formation + Delta-G solvation = -58.789538 kcal Electronic energy + Delta-G solvation = -19434.278287 eV Core-core repulsion = 16276.910869 eV Total energy + Delta-G solvation = -3157.367418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 6.04 seconds Orbital eigenvalues (eV) -43.43093 -40.95137 -37.79755 -36.01916 -34.51306 -34.18897 -33.47203 -31.62254 -28.96435 -28.83837 -25.20675 -24.56518 -22.62470 -22.23313 -21.58652 -21.21015 -19.82823 -18.19183 -18.00263 -17.47492 -16.88037 -16.63330 -16.31636 -15.64108 -15.52786 -15.18151 -14.72105 -14.46757 -14.21410 -13.99790 -13.73451 -13.68961 -13.36763 -13.20941 -12.97537 -12.82302 -12.70849 -12.47106 -12.20999 -11.94282 -11.76694 -11.45588 -11.14538 -10.80728 -10.78731 -10.21771 -9.56332 -9.30260 -8.27220 -6.43448 0.85199 1.43963 1.46744 1.57745 1.75025 1.95986 2.16447 2.31847 2.40911 3.07752 3.57142 3.63544 3.99615 4.07586 4.12671 4.20514 4.31254 4.51102 4.59952 4.69167 4.83764 4.86685 4.98248 5.00969 5.10083 5.15147 5.21702 5.29632 5.31049 5.36233 5.51779 5.66209 5.68503 5.74570 5.87864 6.27035 6.32352 6.68863 7.26270 7.37354 7.79620 8.85197 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.003391 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.442449 B = 8255.828084 C = 9058.597821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.068 0.932 4 C -0.104 4.104 5 C -0.040 4.040 6 C -0.021 4.021 7 C -0.224 4.224 8 C -0.227 4.227 9 C -0.050 4.050 10 O -0.195 6.195 11 N -0.728 5.728 12 C 0.692 3.308 13 O -0.648 6.648 14 N -0.726 5.726 15 C 0.287 3.713 16 C -0.554 4.554 17 H 0.083 0.917 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.256 1.256 24 H 0.069 0.931 25 H 0.028 0.972 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.233 0.767 34 H 0.408 0.592 35 H 0.403 0.597 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -9.601 -23.827 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.086 0.914 4 C -0.141 4.141 5 C -0.078 4.078 6 C -0.071 4.071 7 C -0.243 4.243 8 C -0.246 4.246 9 C -0.117 4.117 10 O -0.092 6.092 11 N -0.386 5.386 12 C 0.392 3.608 13 O -0.531 6.531 14 N -0.380 5.380 15 C 0.163 3.837 16 C -0.592 4.592 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.180 1.180 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.176 0.824 32 H 0.184 0.816 33 H 0.249 0.751 34 H 0.244 0.756 35 H 0.238 0.762 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.343 -8.595 -23.392 24.924 hybrid contribution 0.502 -0.579 0.711 1.046 sum 0.845 -9.175 -22.681 24.481 Atomic orbital electron populations 1.22149 0.94899 1.02683 1.01982 1.20873 0.94245 0.96630 0.82847 0.91421 1.21794 0.93393 1.02121 0.96826 1.20160 0.96127 0.99511 0.91978 1.22657 1.04052 0.82129 0.98280 1.21915 1.07442 1.01939 0.93024 1.22177 1.07091 0.93083 1.02281 1.24746 1.03789 1.02154 0.80977 1.84026 1.64922 1.27691 1.32513 1.45109 1.71656 1.13914 1.07876 1.16327 0.78332 0.84799 0.81391 1.90833 1.59678 1.16949 1.85591 1.45320 1.69264 1.14147 1.09225 1.18372 0.93914 0.91597 0.79799 1.21611 1.45477 0.97358 0.94785 0.89914 1.26063 0.95193 0.97034 1.01333 1.70145 1.48603 1.16590 1.21650 0.85149 0.78452 0.78701 0.76840 1.19609 1.20943 1.17952 0.91220 0.95241 0.89509 0.88049 0.89931 0.88595 0.90670 0.82449 0.81638 0.75092 0.75632 0.76159 0.99738 0.99800 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.48 71.98 0.68 -2.89 16 2 C 0.16 3.76 2.58 44.99 0.12 3.88 16 3 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 4 C -0.10 -1.69 4.74 30.59 0.14 -1.54 16 5 C -0.04 -0.76 5.64 29.85 0.17 -0.59 16 6 C -0.02 -0.43 6.57 24.83 0.16 -0.26 16 7 C -0.22 -4.06 10.81 22.19 0.24 -3.82 16 8 C -0.23 -3.58 10.91 22.19 0.24 -3.34 16 9 C -0.05 -0.76 12.09 66.97 0.81 0.05 16 10 O -0.19 -4.03 10.65 -2.58 -0.03 -4.06 16 11 N -0.73 -20.58 4.53 -457.82 -2.08 -22.66 16 12 C 0.69 28.84 8.53 179.06 1.53 30.36 16 13 O -0.65 -33.48 16.01 -4.00 -0.06 -33.54 16 14 N -0.73 -31.71 5.55 -482.28 -2.68 -34.39 16 15 C 0.29 16.14 5.43 85.63 0.46 16.60 16 16 C -0.55 -30.62 9.28 25.60 0.24 -30.38 16 17 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 20 Si 0.99 42.73 29.54 68.60 2.03 44.75 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.55 7.75 -2.39 -0.02 1.53 16 31 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.23 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.41 8.92 8.62 -92.71 -0.80 8.12 16 35 H 0.40 14.57 8.34 -92.71 -0.77 13.79 16 36 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 37 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -76.12 329.89 2.22 -73.91 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.51 Total: 23.86 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.26 Total: 8.71 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.47 Total: -113.62 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.09 Total: -37.60 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -76.12 2.22 -73.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.117 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.04 seconds