Wall clock time and date at job start Thu Apr 9 2020 13:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32987 * 1 3 3 C 1.47102 * 120.00139 * 2 1 4 4 O 1.21608 * 119.99684 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00008 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99631 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47151 * 180.02562 * 6 5 3 8 8 C 1.50693 * 109.47428 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99818 * 5.62996 * 8 7 6 10 10 N 1.34781 * 120.00227 * 185.63807 * 8 7 6 11 11 C 1.46492 * 120.00065 * 185.07332 * 10 8 7 12 12 C 1.53000 * 109.47112 * 183.82356 * 11 10 8 13 13 C 1.50703 * 115.55331 * 294.93683 * 12 11 10 14 14 H 1.07994 * 119.99679 * 114.84102 * 13 12 11 15 15 C 1.37883 * 119.99414 * 294.56871 * 13 12 11 16 16 N 1.31509 * 119.99487 * 174.42446 * 15 13 12 17 17 Si 1.86795 * 120.00216 * 354.42653 * 15 13 12 18 18 H 1.48502 * 109.47018 * 93.11405 * 17 15 13 19 19 H 1.48504 * 109.46991 * 213.11178 * 17 15 13 20 20 H 1.48499 * 109.47148 * 333.11176 * 17 15 13 21 21 C 1.53005 * 117.49613 * 80.60308 * 12 11 10 22 22 C 1.53001 * 117.49959 * 149.26552 * 12 11 10 23 23 H 1.08005 * 120.00118 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.08008 * 119.99952 * 180.02562 * 2 1 3 26 26 H 0.96995 * 120.00170 * 0.02562 * 5 3 2 27 27 H 1.08998 * 109.47690 * 60.00135 * 6 5 3 28 28 H 1.08998 * 109.47440 * 299.99890 * 6 5 3 29 29 H 1.09007 * 109.46862 * 59.99657 * 7 6 5 30 30 H 1.08998 * 109.46796 * 300.00208 * 7 6 5 31 31 H 0.97007 * 119.99650 * 5.06716 * 10 8 7 32 32 H 1.09003 * 109.47678 * 63.82648 * 11 10 8 33 33 H 1.09001 * 109.47507 * 303.82093 * 11 10 8 34 34 H 0.96998 * 120.00070 * 180.02562 * 16 15 13 35 35 H 1.09002 * 117.49847 * 215.00206 * 21 12 11 36 36 H 1.08997 * 117.49813 * 0.02562 * 21 12 11 37 37 H 1.09003 * 117.49800 * 359.97378 * 22 12 11 38 38 H 1.08995 * 117.50224 * 144.97624 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4573 2.3271 0.0005 5 7 3.4132 1.2739 -0.0005 6 6 4.1456 2.5426 0.0000 7 6 5.6499 2.2631 -0.0014 8 6 6.4034 3.5682 -0.0002 9 8 5.8014 4.6158 0.1047 10 7 7.7462 3.5712 -0.1157 11 6 8.4883 4.8292 -0.0032 12 6 9.9733 4.5706 -0.2653 13 6 10.6684 3.6933 0.7438 14 1 11.0532 2.7290 0.4467 15 6 10.8179 4.1244 2.0450 16 7 11.3250 3.3171 2.9509 17 14 10.3002 5.8549 2.5209 18 1 8.9021 5.8335 3.0208 19 1 11.1994 6.3649 3.5872 20 1 10.3878 6.7421 1.3333 21 6 10.4254 4.4653 -1.7232 22 6 10.7868 5.7022 -0.8968 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8699 -0.9354 -0.0004 26 1 3.8981 0.4339 -0.0013 27 1 3.8827 3.1137 0.8905 28 1 3.8820 3.1148 -0.8894 29 1 5.9125 1.6923 -0.8921 30 1 5.9139 1.6908 0.8879 31 1 8.2213 2.7402 -0.2734 32 1 8.3621 5.2371 0.9997 33 1 8.1088 5.5418 -0.7356 34 1 11.4299 3.6202 3.8663 35 1 11.2256 3.7615 -1.9524 36 1 9.6650 4.5807 -2.4955 37 1 10.2638 6.6308 -1.1259 38 1 11.8245 5.8124 -0.5821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490757545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:10 Heat of formation + Delta-G solvation = -36.133577 kcal Electronic energy + Delta-G solvation = -19496.437109 eV Core-core repulsion = 16340.052127 eV Total energy + Delta-G solvation = -3156.384982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.89768 -39.20923 -37.11792 -35.26500 -33.47791 -33.19153 -32.23647 -30.93579 -27.06458 -25.52495 -24.26913 -22.23883 -21.66205 -20.34338 -19.71203 -19.11634 -17.66971 -16.89389 -16.55722 -15.97395 -15.51098 -15.15170 -15.10766 -14.65560 -14.42917 -13.86788 -13.59746 -13.44054 -12.93386 -12.83855 -12.36520 -12.18731 -12.15503 -11.88284 -11.45936 -11.11576 -10.76048 -10.64168 -10.31392 -10.14863 -10.11379 -9.71865 -9.44638 -9.20904 -9.17289 -8.84182 -8.55591 -8.35696 -6.22996 -4.26215 1.15699 2.95006 3.00352 3.15832 3.25391 3.35837 3.41566 3.78324 4.34583 4.53084 4.77454 4.78478 4.81603 5.04968 5.14119 5.20722 5.29355 5.49673 5.64073 5.85172 5.89871 5.92695 5.96594 6.04721 6.08787 6.18735 6.28902 6.40168 6.46385 6.66706 6.89112 7.00756 7.09537 7.34643 7.61889 8.07637 8.08383 8.35410 8.67057 8.78102 9.40677 10.87873 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.003617 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.805954 B = 7738.844402 C = 7969.096718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.212 4.212 3 C 0.539 3.461 4 O -0.543 6.543 5 N -0.726 5.726 6 C 0.134 3.866 7 C -0.153 4.153 8 C 0.510 3.490 9 O -0.555 6.555 10 N -0.700 5.700 11 C 0.153 3.847 12 C -0.019 4.019 13 C -0.491 4.491 14 H 0.078 0.922 15 C 0.084 3.916 16 N -0.892 5.892 17 Si 0.865 3.135 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.248 1.248 21 C -0.180 4.180 22 C -0.185 4.185 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.401 0.599 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.407 0.593 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.466 -8.123 -6.801 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.233 4.233 3 C 0.327 3.673 4 O -0.422 6.422 5 N -0.377 5.377 6 C 0.011 3.989 7 C -0.194 4.194 8 C 0.294 3.706 9 O -0.434 6.434 10 N -0.349 5.349 11 C 0.029 3.971 12 C -0.020 4.020 13 C -0.528 4.528 14 H 0.096 0.904 15 C -0.120 4.120 16 N -0.529 5.529 17 Si 0.693 3.307 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.172 1.172 21 C -0.217 4.217 22 C -0.223 4.223 23 H 0.133 0.867 24 H 0.132 0.868 25 H 0.145 0.855 26 H 0.235 0.765 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.242 0.758 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.215 -6.611 -6.506 16.974 hybrid contribution 0.472 -0.012 0.422 0.634 sum -13.743 -6.623 -6.084 16.424 Atomic orbital electron populations 1.24744 0.95419 1.03304 0.90102 1.22795 0.96488 0.96959 1.07085 1.18705 0.82139 0.89951 0.76466 1.90815 1.68259 1.33358 1.49729 1.45927 1.06441 1.09942 1.75429 1.21062 0.88891 0.84902 1.04090 1.21793 0.94905 0.97490 1.05189 1.20222 0.82831 0.90500 0.77008 1.90699 1.68363 1.33669 1.50686 1.45836 1.05671 1.12189 1.71211 1.21096 0.91278 0.84542 1.00159 1.19615 0.90386 0.98968 0.93003 1.20231 1.37101 1.03383 0.92114 0.90394 1.24915 0.93878 0.97084 0.96143 1.69884 1.44476 1.35708 1.02789 0.87041 0.78395 0.86079 0.79204 1.20371 1.21764 1.17188 1.22805 1.03024 1.01487 0.94427 1.23036 1.01323 0.91957 1.05990 0.86732 0.86794 0.85509 0.76456 0.90307 0.90619 0.88488 0.87932 0.75757 0.92479 0.93162 0.92414 0.89602 0.90897 0.91081 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 14.31 28.91 0.41 -0.28 16 2 C -0.21 -1.71 10.03 -37.81 -0.38 -2.09 16 3 C 0.54 6.50 7.76 -12.67 -0.10 6.41 16 4 O -0.54 -9.02 16.22 5.27 0.09 -8.93 16 5 N -0.73 -7.41 5.55 -61.49 -0.34 -7.75 16 6 C 0.13 1.74 4.98 -4.04 -0.02 1.72 16 7 C -0.15 -1.79 5.82 -27.88 -0.16 -1.96 16 8 C 0.51 8.73 7.82 -10.99 -0.09 8.64 16 9 O -0.55 -11.67 15.98 5.55 0.09 -11.58 16 10 N -0.70 -12.57 5.48 -60.30 -0.33 -12.90 16 11 C 0.15 3.18 5.15 -4.05 -0.02 3.16 16 12 C -0.02 -0.40 0.84 -155.66 -0.13 -0.53 16 13 C -0.49 -12.53 9.16 -34.44 -0.32 -12.84 16 14 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.89 -25.75 13.96 55.43 0.77 -24.98 16 17 Si 0.87 20.95 24.97 -169.99 -4.25 16.70 16 18 H -0.28 -6.86 7.02 56.52 0.40 -6.47 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.25 -5.66 5.73 56.52 0.32 -5.33 16 21 C -0.18 -3.35 9.96 -26.69 -0.27 -3.62 16 22 C -0.18 -3.70 8.03 -26.69 -0.21 -3.91 16 23 H 0.11 0.46 8.06 -52.48 -0.42 0.04 16 24 H 0.11 0.98 7.49 -52.49 -0.39 0.58 16 25 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 26 H 0.40 2.66 8.46 -40.82 -0.35 2.32 16 27 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.41 6.66 8.34 -40.82 -0.34 6.32 16 32 H 0.06 1.33 5.05 -51.93 -0.26 1.07 16 33 H 0.05 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -33.49 326.25 -6.05 -39.55 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.62 Total: 8.11 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.38 Total: -3.13 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.10 Total: -45.63 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.17 Total: -20.51 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.25 Total: 16.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.49 -6.05 -39.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490757545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.412 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds