Wall clock time and date at job start Thu Apr 9 2020 13:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32987 * 1 3 3 C 1.47102 * 120.00139 * 2 1 4 4 O 1.21608 * 119.99684 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00008 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99631 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47151 * 180.02562 * 6 5 3 8 8 C 1.50693 * 109.47428 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99818 * 5.62996 * 8 7 6 10 10 N 1.34781 * 120.00227 * 185.63807 * 8 7 6 11 11 C 1.46492 * 120.00065 * 185.07332 * 10 8 7 12 12 C 1.53000 * 109.47112 * 183.82356 * 11 10 8 13 13 C 1.50703 * 115.55331 * 294.93683 * 12 11 10 14 14 H 1.07994 * 119.99679 * 114.84102 * 13 12 11 15 15 C 1.37883 * 119.99414 * 294.56871 * 13 12 11 16 16 N 1.31509 * 119.99487 * 174.42446 * 15 13 12 17 17 Si 1.86795 * 120.00216 * 354.42653 * 15 13 12 18 18 H 1.48502 * 109.47018 * 93.11405 * 17 15 13 19 19 H 1.48504 * 109.46991 * 213.11178 * 17 15 13 20 20 H 1.48499 * 109.47148 * 333.11176 * 17 15 13 21 21 C 1.53005 * 117.49613 * 80.60308 * 12 11 10 22 22 C 1.53001 * 117.49959 * 149.26552 * 12 11 10 23 23 H 1.08005 * 120.00118 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.08008 * 119.99952 * 180.02562 * 2 1 3 26 26 H 0.96995 * 120.00170 * 0.02562 * 5 3 2 27 27 H 1.08998 * 109.47690 * 60.00135 * 6 5 3 28 28 H 1.08998 * 109.47440 * 299.99890 * 6 5 3 29 29 H 1.09007 * 109.46862 * 59.99657 * 7 6 5 30 30 H 1.08998 * 109.46796 * 300.00208 * 7 6 5 31 31 H 0.97007 * 119.99650 * 5.06716 * 10 8 7 32 32 H 1.09003 * 109.47678 * 63.82648 * 11 10 8 33 33 H 1.09001 * 109.47507 * 303.82093 * 11 10 8 34 34 H 0.96998 * 120.00070 * 180.02562 * 16 15 13 35 35 H 1.09002 * 117.49847 * 215.00206 * 21 12 11 36 36 H 1.08997 * 117.49813 * 0.02562 * 21 12 11 37 37 H 1.09003 * 117.49800 * 359.97378 * 22 12 11 38 38 H 1.08995 * 117.50224 * 144.97624 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4573 2.3271 0.0005 5 7 3.4132 1.2739 -0.0005 6 6 4.1456 2.5426 0.0000 7 6 5.6499 2.2631 -0.0014 8 6 6.4034 3.5682 -0.0002 9 8 5.8014 4.6158 0.1047 10 7 7.7462 3.5712 -0.1157 11 6 8.4883 4.8292 -0.0032 12 6 9.9733 4.5706 -0.2653 13 6 10.6684 3.6933 0.7438 14 1 11.0532 2.7290 0.4467 15 6 10.8179 4.1244 2.0450 16 7 11.3250 3.3171 2.9509 17 14 10.3002 5.8549 2.5209 18 1 8.9021 5.8335 3.0208 19 1 11.1994 6.3649 3.5872 20 1 10.3878 6.7421 1.3333 21 6 10.4254 4.4653 -1.7232 22 6 10.7868 5.7022 -0.8968 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8699 -0.9354 -0.0004 26 1 3.8981 0.4339 -0.0013 27 1 3.8827 3.1137 0.8905 28 1 3.8820 3.1148 -0.8894 29 1 5.9125 1.6923 -0.8921 30 1 5.9139 1.6908 0.8879 31 1 8.2213 2.7402 -0.2734 32 1 8.3621 5.2371 0.9997 33 1 8.1088 5.5418 -0.7356 34 1 11.4299 3.6202 3.8663 35 1 11.2256 3.7615 -1.9524 36 1 9.6650 4.5807 -2.4955 37 1 10.2638 6.6308 -1.1259 38 1 11.8245 5.8124 -0.5821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490757545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:08 Heat of formation + Delta-G solvation = -62.488341 kcal Electronic energy + Delta-G solvation = -19497.579937 eV Core-core repulsion = 16340.052127 eV Total energy + Delta-G solvation = -3157.527810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.02229 -40.47974 -38.73629 -36.31225 -34.99886 -34.27231 -33.88627 -31.96955 -28.65935 -27.27739 -25.39296 -23.32196 -23.07893 -21.50014 -21.11800 -20.51867 -18.75761 -18.30193 -17.92171 -17.20495 -16.84006 -16.63675 -16.56393 -15.95944 -15.35937 -15.24333 -14.96592 -14.72739 -14.51715 -14.12812 -14.06769 -13.76951 -13.04347 -12.92260 -12.78740 -12.71397 -12.47576 -12.19482 -12.08325 -11.49436 -11.19134 -11.02745 -10.90988 -10.76783 -10.70365 -10.33164 -10.14434 -9.91053 -8.32147 -6.35350 0.48518 1.30415 1.38116 1.47253 1.65155 1.95787 2.33580 2.33709 2.55068 3.00488 3.35308 3.62320 3.93591 3.99579 4.05707 4.06710 4.30676 4.31881 4.46587 4.50386 4.53692 4.78246 4.80875 4.84464 4.91717 4.92176 5.08154 5.27061 5.31907 5.36846 5.50344 5.51595 5.57486 5.68929 6.29657 6.56135 6.66706 6.75058 7.23228 7.30843 7.33902 8.81897 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.003617 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.805954 B = 7738.844402 C = 7969.096718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.221 4.221 3 C 0.528 3.472 4 O -0.601 6.601 5 N -0.709 5.709 6 C 0.141 3.859 7 C -0.136 4.136 8 C 0.505 3.495 9 O -0.598 6.598 10 N -0.699 5.699 11 C 0.158 3.842 12 C -0.042 4.042 13 C -0.474 4.474 14 H 0.050 0.950 15 C 0.036 3.964 16 N -0.938 5.938 17 Si 0.911 3.089 18 H -0.290 1.290 19 H -0.297 1.297 20 H -0.225 1.225 21 C -0.152 4.152 22 C -0.186 4.186 23 H 0.153 0.847 24 H 0.091 0.909 25 H 0.167 0.833 26 H 0.422 0.578 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.416 0.584 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 -9.558 -8.477 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.242 4.242 3 C 0.319 3.681 4 O -0.484 6.484 5 N -0.361 5.361 6 C 0.016 3.984 7 C -0.175 4.175 8 C 0.292 3.708 9 O -0.480 6.480 10 N -0.349 5.349 11 C 0.034 3.966 12 C -0.043 4.043 13 C -0.512 4.512 14 H 0.068 0.932 15 C -0.163 4.163 16 N -0.577 5.577 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.224 1.224 20 H -0.148 1.148 21 C -0.189 4.189 22 C -0.224 4.224 23 H 0.171 0.829 24 H 0.109 0.891 25 H 0.184 0.816 26 H 0.261 0.739 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.253 0.747 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.796 -8.097 -8.214 18.760 hybrid contribution 0.632 0.385 0.886 1.155 sum -14.164 -7.712 -7.328 17.714 Atomic orbital electron populations 1.25016 0.95330 1.04070 0.88044 1.22910 0.96695 0.96120 1.08433 1.19542 0.82528 0.90822 0.75210 1.90788 1.69370 1.35725 1.52516 1.45731 1.06088 1.09875 1.74435 1.20762 0.90102 0.85814 1.01684 1.21731 0.92769 0.94862 1.08170 1.21100 0.82457 0.91850 0.75390 1.90685 1.69066 1.35855 1.52418 1.45816 1.06067 1.11677 1.71310 1.20861 0.91042 0.85962 0.98747 1.19455 0.90527 1.00162 0.94162 1.20381 1.35506 1.02653 0.92631 0.93155 1.25515 0.94496 0.99684 0.96563 1.69992 1.47205 1.37374 1.03153 0.86316 0.76952 0.83491 0.79456 1.21692 1.22363 1.14756 1.22851 1.03008 1.00071 0.92941 1.23086 1.00710 0.92906 1.05716 0.82882 0.89104 0.81603 0.73936 0.93489 0.92621 0.84404 0.85706 0.74744 0.95319 0.92336 0.92664 0.89372 0.88190 0.89210 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 14.31 66.65 0.95 -0.08 16 2 C -0.22 -3.00 10.03 23.43 0.23 -2.77 16 3 C 0.53 12.36 7.76 86.57 0.67 13.03 16 4 O -0.60 -20.64 16.22 -4.05 -0.07 -20.71 16 5 N -0.71 -13.29 5.55 -466.72 -2.59 -15.88 16 6 C 0.14 3.59 4.98 86.38 0.43 4.02 16 7 C -0.14 -2.85 5.82 29.85 0.17 -2.68 16 8 C 0.50 16.71 7.82 87.65 0.69 17.39 16 9 O -0.60 -25.27 15.98 -3.04 -0.05 -25.31 16 10 N -0.70 -24.01 5.48 -463.07 -2.54 -26.55 16 11 C 0.16 6.38 5.15 86.38 0.44 6.82 16 12 C -0.04 -1.72 0.84 -52.92 -0.04 -1.77 16 13 C -0.47 -24.03 9.16 25.60 0.23 -23.79 16 14 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 15 C 0.04 1.98 5.47 84.66 0.46 2.44 16 16 N -0.94 -55.20 13.96 21.45 0.30 -54.90 16 17 Si 0.91 43.45 24.97 68.60 1.71 45.16 16 18 H -0.29 -14.31 7.02 99.48 0.70 -13.61 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 20 H -0.23 -9.74 5.73 99.48 0.57 -9.17 16 21 C -0.15 -5.14 9.96 30.62 0.30 -4.84 16 22 C -0.19 -6.93 8.03 30.62 0.25 -6.68 16 23 H 0.15 0.64 8.06 -2.91 -0.02 0.61 16 24 H 0.09 1.53 7.49 -2.91 -0.02 1.51 16 25 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 26 H 0.42 4.20 8.46 -92.71 -0.78 3.41 16 27 H 0.05 1.50 8.04 -2.39 -0.02 1.48 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.42 12.73 8.34 -92.70 -0.77 11.96 16 32 H 0.03 1.32 5.05 -2.39 -0.01 1.31 16 33 H 0.06 2.25 8.07 -2.39 -0.02 2.24 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.09 2.97 8.14 -2.39 -0.02 2.96 16 36 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -76.50 326.25 0.94 -75.56 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.63 Total: 21.53 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.80 Total: 1.10 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -4.83 Total: -97.33 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.11 Total: -46.02 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.71 Total: 45.16 kcal Total: -76.50 0.94 -75.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490757545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.072 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds