Wall clock time and date at job start Thu Apr 9 2020 13:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47286 * 199.80801 * 3 2 1 5 5 C 1.36944 * 119.99860 * 264.35957 * 4 3 2 6 6 H 1.07996 * 119.99630 * 196.60118 * 5 4 3 7 7 C 1.38813 * 120.00146 * 16.59330 * 5 4 3 8 8 N 1.31620 * 119.99719 * 22.38353 * 7 5 4 9 9 Si 1.86796 * 120.00169 * 202.38344 * 7 5 4 10 10 H 1.48494 * 109.47004 * 59.99723 * 9 7 5 11 11 H 1.48497 * 109.47277 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46864 * 299.99933 * 9 7 5 13 13 C 1.46497 * 119.99947 * 84.35347 * 4 3 2 14 14 C 1.50700 * 109.46951 * 270.00066 * 13 4 3 15 15 O 1.21281 * 120.00245 * 0.02562 * 14 13 4 16 16 N 1.34777 * 119.99659 * 179.97438 * 14 13 4 17 17 C 1.46503 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.53181 * 109.54121 * 85.44803 * 17 16 14 19 19 C 1.53095 * 109.15894 * 176.84896 * 18 17 16 20 20 O 1.42904 * 109.41629 * 302.38710 * 19 18 17 21 21 C 1.42900 * 114.09452 * 61.16137 * 20 19 18 22 22 C 1.53092 * 109.41876 * 298.84056 * 21 20 19 23 23 H 4.40642 * 5.51362 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47067 * 79.80668 * 3 2 1 25 25 H 1.09004 * 109.47644 * 319.80878 * 3 2 1 26 26 H 0.97002 * 119.99748 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.46733 * 150.00304 * 13 4 3 28 28 H 1.08994 * 109.47025 * 30.00559 * 13 4 3 29 29 H 0.97001 * 120.00261 * 0.02562 * 16 14 13 30 30 H 1.09002 * 109.61546 * 325.22353 * 17 16 14 31 31 H 1.09002 * 109.52019 * 296.75249 * 18 17 16 32 32 H 1.08998 * 109.52051 * 56.94283 * 18 17 16 33 33 H 1.09004 * 109.47627 * 182.40846 * 19 18 17 34 34 H 1.08996 * 109.48029 * 62.37591 * 19 18 17 35 35 H 1.09000 * 109.48179 * 178.85510 * 21 20 19 36 36 H 1.09006 * 109.49348 * 58.82978 * 21 20 19 37 37 H 1.09000 * 109.52389 * 297.70752 * 22 21 20 38 38 H 1.08996 * 109.52360 * 177.51178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3004 0.4680 5 6 3.4715 2.2712 -0.4368 6 1 4.0724 3.1131 -0.1263 7 6 3.0416 2.1731 -1.7530 8 7 1.9888 1.4405 -2.0485 9 14 3.9571 3.0808 -3.1048 10 1 5.3649 2.6104 -3.1511 11 1 3.3025 2.8147 -4.4108 12 1 3.9315 4.5393 -2.8267 13 6 3.2602 1.5614 1.9040 14 6 1.9702 2.1412 2.4246 15 8 1.0370 2.3184 1.6705 16 7 1.8533 2.4618 3.7284 17 6 0.5991 3.0249 4.2346 18 6 -0.3659 1.8894 4.5896 19 6 -1.6422 2.4842 5.1906 20 8 -1.3067 3.2674 6.3379 21 6 -0.4444 4.3720 6.0584 22 6 0.8800 3.8533 5.4921 23 1 -1.0502 -0.0004 0.0000 24 1 3.0094 -0.1811 -1.0115 25 1 3.0098 -0.7842 0.6632 26 1 1.6886 1.3716 -2.9684 27 1 4.0715 2.2691 2.0746 28 1 3.4759 0.6288 2.4252 29 1 2.5995 2.3198 4.3316 30 1 0.1493 3.6608 3.4721 31 1 -0.6147 1.3280 3.6890 32 1 0.1038 1.2258 5.3156 33 1 -2.3151 1.6786 5.4846 34 1 -2.1327 3.1158 4.4500 35 1 -0.2545 4.9266 6.9773 36 1 -0.9191 5.0286 5.3292 37 1 1.3748 3.2293 6.2363 38 1 1.5222 4.6962 5.2371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491327958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:12 Heat of formation + Delta-G solvation = 4.455662 kcal Electronic energy + Delta-G solvation = -20726.291016 eV Core-core repulsion = 17571.666115 eV Total energy + Delta-G solvation = -3154.624900 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72380 -38.31180 -35.75405 -34.54697 -31.59453 -31.39048 -31.16433 -30.78432 -27.19244 -25.87136 -24.28485 -23.62102 -21.86025 -20.32541 -19.57835 -17.41402 -16.77850 -16.46004 -16.08146 -15.87276 -15.31831 -14.85462 -14.73528 -14.33459 -13.79474 -13.62054 -13.22858 -13.08912 -12.90677 -12.38248 -12.24695 -11.54986 -11.41002 -11.34755 -11.25236 -10.95300 -10.79307 -10.67578 -10.38344 -10.26619 -9.97322 -9.79819 -9.03710 -8.72062 -8.59655 -8.43331 -8.24837 -6.97651 -5.72401 -3.14599 3.40017 3.46008 3.47231 3.63576 3.67986 3.83687 4.35757 4.56480 4.67561 4.68989 4.85390 4.91460 5.12319 5.19892 5.34384 5.42901 5.46897 5.58239 5.66855 5.68499 5.79786 5.87218 5.96611 6.01065 6.13223 6.17869 6.28417 6.34813 6.74514 7.04665 7.09669 7.27183 7.57565 7.76325 8.14038 8.33121 9.10748 9.21816 9.45822 9.78712 10.22690 11.30071 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.005030 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.943768 B = 5565.702646 C = 5914.600191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.094 4.094 3 C 0.270 3.730 4 N -0.558 5.558 5 C -0.267 4.267 6 H 0.074 0.926 7 C 0.008 3.992 8 N -0.877 5.877 9 Si 0.902 3.098 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.128 3.872 14 C 0.465 3.535 15 O -0.494 6.494 16 N -0.747 5.747 17 C 0.146 3.854 18 C -0.164 4.164 19 C 0.064 3.936 20 O -0.386 6.386 21 C 0.065 3.935 22 C -0.161 4.161 23 H 0.183 0.817 24 H 0.097 0.903 25 H 0.034 0.966 26 H 0.254 0.746 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.390 0.610 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 1.076 15.174 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.097 4.097 3 C 0.145 3.855 4 N -0.276 5.276 5 C -0.396 4.396 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.004 4.004 14 C 0.249 3.751 15 O -0.364 6.364 16 N -0.403 5.403 17 C 0.040 3.960 18 C -0.203 4.203 19 C -0.014 4.014 20 O -0.305 6.305 21 C -0.013 4.013 22 C -0.200 4.200 23 H 0.200 0.800 24 H 0.115 0.885 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.222 0.778 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.654 1.124 14.502 14.639 hybrid contribution 0.272 0.758 -0.765 1.110 sum -1.382 1.882 13.737 13.934 Atomic orbital electron populations 1.23934 0.95096 1.05093 1.06741 1.23928 0.94995 0.95835 0.94906 1.17873 0.83256 0.84999 0.99400 1.44206 1.72893 1.11857 0.98609 1.19115 1.26448 1.04911 0.89147 0.90779 1.24943 0.96101 0.99591 0.98555 1.70186 1.21009 1.42629 1.18033 0.86389 0.79560 0.79409 0.81512 1.20919 1.21714 1.21094 1.21064 0.93133 0.98826 0.87350 1.23426 0.93116 0.78082 0.80503 1.90754 1.40186 1.49859 1.55599 1.46588 1.14958 1.68010 1.10721 1.20748 0.86375 0.94091 0.94809 1.22587 0.96576 0.99254 1.01879 1.22580 0.96134 0.94737 0.87916 1.87899 1.67169 1.42193 1.33241 1.22520 0.89337 0.88564 1.00857 1.22481 0.98873 1.00865 0.97758 0.79958 0.88481 0.94773 0.93568 0.90582 0.91416 0.77772 0.89996 0.90115 0.91289 0.88843 0.92981 0.88768 0.93006 0.90760 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.26 18.78 29.55 0.56 -6.71 16 2 C -0.09 -2.43 10.03 -37.12 -0.37 -2.80 16 3 C 0.27 6.53 5.45 -6.83 -0.04 6.49 16 4 N -0.56 -13.68 2.09 -177.95 -0.37 -14.06 16 5 C -0.27 -7.25 9.66 -15.06 -0.15 -7.39 16 6 H 0.07 1.96 7.90 -52.49 -0.41 1.54 16 7 C 0.01 0.24 4.85 -17.43 -0.08 0.15 16 8 N -0.88 -25.74 9.49 55.49 0.53 -25.21 16 9 Si 0.90 21.76 29.61 -169.99 -5.03 16.73 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.13 2.49 6.18 -5.20 -0.03 2.46 16 14 C 0.47 9.37 7.78 -10.99 -0.09 9.29 16 15 O -0.49 -12.60 14.10 5.56 0.08 -12.53 16 16 N -0.75 -11.19 5.08 -53.62 -0.27 -11.46 16 17 C 0.15 2.06 2.54 -67.74 -0.17 1.89 16 18 C -0.16 -2.24 5.72 -26.59 -0.15 -2.39 16 19 C 0.06 0.77 6.84 37.21 0.25 1.02 16 20 O -0.39 -4.77 10.77 -35.23 -0.38 -5.15 16 21 C 0.06 0.66 6.84 37.21 0.25 0.92 16 22 C -0.16 -1.72 5.61 -26.59 -0.15 -1.87 16 23 H 0.18 4.02 7.80 -54.08 -0.42 3.60 16 24 H 0.10 2.53 6.41 -51.93 -0.33 2.20 16 25 H 0.03 0.71 7.97 -51.93 -0.41 0.29 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 28 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 29 H 0.39 4.53 8.61 -40.82 -0.35 4.18 16 30 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -34.11 318.45 -6.49 -40.61 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.68 Total: 5.22 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.17 Total: 1.06 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.12 Total: -50.73 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.30 Total: -17.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.11 -6.49 -40.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491327958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.063 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds