Wall clock time and date at job start Thu Apr 9 2020 13:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47286 * 199.80801 * 3 2 1 5 5 C 1.36944 * 119.99860 * 264.35957 * 4 3 2 6 6 H 1.07996 * 119.99630 * 196.60118 * 5 4 3 7 7 C 1.38813 * 120.00146 * 16.59330 * 5 4 3 8 8 N 1.31620 * 119.99719 * 22.38353 * 7 5 4 9 9 Si 1.86796 * 120.00169 * 202.38344 * 7 5 4 10 10 H 1.48494 * 109.47004 * 59.99723 * 9 7 5 11 11 H 1.48497 * 109.47277 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46864 * 299.99933 * 9 7 5 13 13 C 1.46497 * 119.99947 * 84.35347 * 4 3 2 14 14 C 1.50700 * 109.46951 * 270.00066 * 13 4 3 15 15 O 1.21281 * 120.00245 * 0.02562 * 14 13 4 16 16 N 1.34777 * 119.99659 * 179.97438 * 14 13 4 17 17 C 1.46503 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.53181 * 109.54121 * 85.44803 * 17 16 14 19 19 C 1.53095 * 109.15894 * 176.84896 * 18 17 16 20 20 O 1.42904 * 109.41629 * 302.38710 * 19 18 17 21 21 C 1.42900 * 114.09452 * 61.16137 * 20 19 18 22 22 C 1.53092 * 109.41876 * 298.84056 * 21 20 19 23 23 H 4.40642 * 5.51362 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47067 * 79.80668 * 3 2 1 25 25 H 1.09004 * 109.47644 * 319.80878 * 3 2 1 26 26 H 0.97002 * 119.99748 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.46733 * 150.00304 * 13 4 3 28 28 H 1.08994 * 109.47025 * 30.00559 * 13 4 3 29 29 H 0.97001 * 120.00261 * 0.02562 * 16 14 13 30 30 H 1.09002 * 109.61546 * 325.22353 * 17 16 14 31 31 H 1.09002 * 109.52019 * 296.75249 * 18 17 16 32 32 H 1.08998 * 109.52051 * 56.94283 * 18 17 16 33 33 H 1.09004 * 109.47627 * 182.40846 * 19 18 17 34 34 H 1.08996 * 109.48029 * 62.37591 * 19 18 17 35 35 H 1.09000 * 109.48179 * 178.85510 * 21 20 19 36 36 H 1.09006 * 109.49348 * 58.82978 * 21 20 19 37 37 H 1.09000 * 109.52389 * 297.70752 * 22 21 20 38 38 H 1.08996 * 109.52360 * 177.51178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3004 0.4680 5 6 3.4715 2.2712 -0.4368 6 1 4.0724 3.1131 -0.1263 7 6 3.0416 2.1731 -1.7530 8 7 1.9888 1.4405 -2.0485 9 14 3.9571 3.0808 -3.1048 10 1 5.3649 2.6104 -3.1511 11 1 3.3025 2.8147 -4.4108 12 1 3.9315 4.5393 -2.8267 13 6 3.2602 1.5614 1.9040 14 6 1.9702 2.1412 2.4246 15 8 1.0370 2.3184 1.6705 16 7 1.8533 2.4618 3.7284 17 6 0.5991 3.0249 4.2346 18 6 -0.3659 1.8894 4.5896 19 6 -1.6422 2.4842 5.1906 20 8 -1.3067 3.2674 6.3379 21 6 -0.4444 4.3720 6.0584 22 6 0.8800 3.8533 5.4921 23 1 -1.0502 -0.0004 0.0000 24 1 3.0094 -0.1811 -1.0115 25 1 3.0098 -0.7842 0.6632 26 1 1.6886 1.3716 -2.9684 27 1 4.0715 2.2691 2.0746 28 1 3.4759 0.6288 2.4252 29 1 2.5995 2.3198 4.3316 30 1 0.1493 3.6608 3.4721 31 1 -0.6147 1.3280 3.6890 32 1 0.1038 1.2258 5.3156 33 1 -2.3151 1.6786 5.4846 34 1 -2.1327 3.1158 4.4500 35 1 -0.2545 4.9266 6.9773 36 1 -0.9191 5.0286 5.3292 37 1 1.3748 3.2293 6.2363 38 1 1.5222 4.6962 5.2371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491327958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:11 Heat of formation + Delta-G solvation = -19.439744 kcal Electronic energy + Delta-G solvation = -20727.327198 eV Core-core repulsion = 17571.666115 eV Total energy + Delta-G solvation = -3155.661083 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93237 -39.66624 -37.50378 -35.93696 -33.43912 -33.19589 -32.31540 -32.09539 -28.84321 -27.83440 -25.51272 -24.58779 -23.61714 -21.43763 -21.06396 -19.36066 -18.29656 -18.01120 -17.37871 -16.98234 -16.88892 -16.23566 -16.08306 -15.67450 -15.50050 -15.03010 -14.78659 -14.52656 -14.40361 -13.93388 -13.38167 -13.29797 -13.13292 -12.69231 -12.56607 -12.41321 -12.32393 -12.25347 -11.96040 -11.88417 -11.41772 -10.96294 -10.74451 -10.61589 -10.44668 -10.17360 -9.83074 -8.91678 -7.79155 -5.21725 1.48720 1.50385 1.57458 2.07569 2.35336 2.48376 2.59602 2.69390 2.91650 3.34071 3.70713 3.82627 3.84034 3.99641 4.11501 4.16131 4.23824 4.28574 4.50048 4.61084 4.66111 4.71375 4.76016 4.76852 4.85175 4.94326 5.02798 5.09534 5.22891 5.32296 5.64121 5.71758 5.75374 6.18359 6.27240 6.86826 7.11116 7.50588 7.68290 7.86894 8.23828 9.21784 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.005030 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.943768 B = 5565.702646 C = 5914.600191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.111 4.111 3 C 0.268 3.732 4 N -0.573 5.573 5 C -0.268 4.268 6 H 0.078 0.922 7 C -0.048 4.048 8 N -0.910 5.910 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.302 1.302 12 H -0.285 1.285 13 C 0.122 3.878 14 C 0.465 3.535 15 O -0.555 6.555 16 N -0.725 5.725 17 C 0.143 3.857 18 C -0.157 4.157 19 C 0.067 3.933 20 O -0.393 6.393 21 C 0.059 3.941 22 C -0.149 4.149 23 H 0.202 0.798 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.243 0.757 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.411 0.589 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 1.571 17.667 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.114 4.114 3 C 0.143 3.857 4 N -0.291 5.291 5 C -0.398 4.398 6 H 0.096 0.904 7 C -0.244 4.244 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.228 1.228 12 H -0.212 1.212 13 C -0.008 4.008 14 C 0.250 3.750 15 O -0.431 6.431 16 N -0.381 5.381 17 C 0.037 3.963 18 C -0.196 4.196 19 C -0.010 4.010 20 O -0.312 6.312 21 C -0.018 4.018 22 C -0.187 4.187 23 H 0.219 0.781 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.247 0.753 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.321 1.631 17.091 17.172 hybrid contribution -0.115 0.633 -1.382 1.524 sum -0.436 2.264 15.710 15.878 Atomic orbital electron populations 1.24580 0.96105 1.05151 1.06682 1.24520 0.95964 0.95892 0.95005 1.17925 0.82468 0.86193 0.99106 1.44302 1.72933 1.11445 1.00438 1.19447 1.25507 1.04904 0.89907 0.90421 1.25652 0.96982 1.01157 1.00633 1.70371 1.22737 1.44956 1.17359 0.85411 0.78814 0.78068 0.78453 1.19501 1.22831 1.21155 1.21331 0.93153 1.01298 0.85012 1.23320 0.92478 0.77562 0.81611 1.90746 1.42071 1.52695 1.57552 1.46224 1.16084 1.66271 1.09479 1.20826 0.85713 0.94268 0.95498 1.22484 0.97456 0.98928 1.00694 1.22547 0.95442 0.95124 0.87878 1.87897 1.67616 1.42657 1.33050 1.22734 0.88660 0.88116 1.02251 1.22421 0.99540 1.00839 0.95950 0.78105 0.90987 0.91005 0.94754 0.88312 0.87717 0.75270 0.93526 0.93490 0.90031 0.87280 0.93704 0.85883 0.93309 0.88926 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.68 18.78 74.32 1.40 -14.29 16 2 C -0.11 -5.82 10.03 31.12 0.31 -5.51 16 3 C 0.27 12.96 5.45 84.57 0.46 13.42 16 4 N -0.57 -27.67 2.09 -716.91 -1.50 -29.16 16 5 C -0.27 -14.45 9.66 84.03 0.81 -13.64 16 6 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 7 C -0.05 -2.68 4.85 84.86 0.41 -2.27 16 8 N -0.91 -54.86 9.49 21.65 0.21 -54.65 16 9 Si 0.96 45.40 29.61 68.60 2.03 47.43 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.12 4.48 6.18 85.63 0.53 5.01 16 14 C 0.47 18.30 7.78 87.66 0.68 18.98 16 15 O -0.56 -28.81 14.10 -3.03 -0.04 -28.86 16 16 N -0.72 -20.27 5.08 -441.95 -2.25 -22.51 16 17 C 0.14 3.86 2.54 45.11 0.11 3.98 16 18 C -0.16 -4.15 5.72 30.69 0.18 -3.97 16 19 C 0.07 1.55 6.84 72.01 0.49 2.04 16 20 O -0.39 -8.78 10.77 -148.98 -1.60 -10.39 16 21 C 0.06 1.06 6.84 72.01 0.49 1.55 16 22 C -0.15 -2.73 5.61 30.69 0.17 -2.55 16 23 H 0.20 9.04 7.80 -4.41 -0.03 9.00 16 24 H 0.07 3.83 6.41 -2.39 -0.02 3.81 16 25 H 0.07 2.85 7.97 -2.38 -0.02 2.83 16 26 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.10 3.16 8.02 -2.39 -0.02 3.14 16 28 H 0.11 3.05 7.95 -2.39 -0.02 3.03 16 29 H 0.41 8.10 8.61 -92.71 -0.80 7.30 16 30 H 0.05 1.62 7.58 -2.39 -0.02 1.60 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.82 318.45 3.14 -72.67 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.25 Total: 22.72 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.05 Total: 2.75 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -3.54 Total: -106.33 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -1.65 Total: -39.24 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.82 3.14 -72.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491327958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.232 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds