Wall clock time and date at job start Thu Apr 9 2020 13:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47313 * 329.90833 * 3 2 1 5 5 C 1.36931 * 120.00205 * 263.91381 * 4 3 2 6 6 H 1.08006 * 120.00310 * 199.39845 * 5 4 3 7 7 C 1.38819 * 119.99813 * 19.40218 * 5 4 3 8 8 N 1.31609 * 120.00105 * 22.26847 * 7 5 4 9 9 Si 1.86802 * 119.99685 * 202.27349 * 7 5 4 10 10 H 1.48500 * 109.47490 * 60.00063 * 9 7 5 11 11 H 1.48499 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47336 * 299.99698 * 9 7 5 13 13 C 1.46504 * 119.99912 * 83.91441 * 4 3 2 14 14 C 1.53001 * 109.46927 * 90.00238 * 13 4 3 15 15 C 1.50706 * 109.46939 * 180.02562 * 14 13 4 16 16 O 1.21285 * 119.99931 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99759 * 179.72133 * 15 14 13 18 18 C 1.47151 * 120.98456 * 359.97438 * 17 15 14 19 19 C 1.53718 * 108.16055 * 129.42988 * 18 17 15 20 20 O 1.42959 * 109.14477 * 52.53745 * 19 18 17 21 21 C 1.42958 * 114.17090 * 297.28430 * 20 19 18 22 22 C 1.47153 * 120.97736 * 180.27048 * 17 15 14 23 23 H 4.40636 * 5.51395 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.47158 * 209.90610 * 3 2 1 25 25 H 1.09005 * 109.47381 * 89.90840 * 3 2 1 26 26 H 0.97004 * 120.00066 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46904 * 329.99909 * 13 4 3 28 28 H 1.08998 * 109.47067 * 210.00277 * 13 4 3 29 29 H 1.08994 * 109.47710 * 59.99925 * 14 13 4 30 30 H 1.09005 * 109.47098 * 299.99538 * 14 13 4 31 31 H 1.08992 * 109.68153 * 249.20654 * 18 17 15 32 32 H 1.08998 * 109.68003 * 9.76628 * 18 17 15 33 33 H 1.09000 * 109.65704 * 292.57309 * 19 18 17 34 34 H 1.09005 * 109.48409 * 172.39966 * 19 18 17 35 35 H 1.09000 * 109.51586 * 302.66373 * 21 20 19 36 36 H 1.09000 * 109.55729 * 182.53220 * 21 20 19 37 37 H 1.08991 * 109.68448 * 350.24101 * 22 17 15 38 38 H 1.09003 * 109.67788 * 110.79618 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1942 0.6925 5 6 3.4816 -1.1251 2.0154 6 1 4.1206 -1.8817 2.4465 7 6 3.0118 -0.0826 2.8025 8 7 1.9271 0.5728 2.4476 9 14 3.9194 0.3901 4.3653 10 1 5.3086 0.7927 4.0285 11 1 3.2198 1.5245 5.0201 12 1 3.9511 -0.7714 5.2900 13 6 3.2528 -2.4630 -0.0303 14 6 4.6461 -2.5670 -0.6540 15 6 4.7672 -3.8720 -1.3981 16 8 3.8314 -4.6430 -1.4264 17 7 5.9136 -4.1798 -2.0364 18 6 7.0602 -3.2576 -2.0213 19 6 8.3074 -4.0507 -1.5988 20 8 8.4330 -5.2056 -2.4320 21 6 7.3479 -6.1294 -2.3194 22 6 6.0533 -5.4452 -2.7743 23 1 -1.0498 -0.0002 0.0003 24 1 3.0089 0.8917 0.5124 25 1 3.0093 -0.0008 -1.0277 26 1 1.5986 1.3011 2.9979 27 1 2.4987 -2.5048 -0.8164 28 1 3.1019 -3.2911 0.6622 29 1 5.4001 -2.5252 0.1320 30 1 4.7969 -1.7389 -1.3466 31 1 7.2077 -2.8390 -3.0167 32 1 6.8757 -2.4542 -1.3082 33 1 8.2095 -4.3611 -0.5586 34 1 9.1920 -3.4235 -1.7100 35 1 7.2465 -6.4474 -1.2818 36 1 7.5412 -6.9979 -2.9491 37 1 5.2018 -6.0910 -2.5603 38 1 6.1014 -5.2427 -3.8443 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491505255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:17 Heat of formation + Delta-G solvation = 7.449113 kcal Electronic energy + Delta-G solvation = -20316.744803 eV Core-core repulsion = 17162.249709 eV Total energy + Delta-G solvation = -3154.495094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.25151 -38.32624 -36.12635 -34.73633 -32.40088 -31.54252 -31.46110 -29.47903 -27.77548 -26.04537 -24.77185 -23.86804 -22.16565 -20.70422 -18.96690 -17.49483 -17.22780 -16.56386 -16.22749 -15.84225 -15.69142 -15.25305 -15.07155 -14.71576 -13.96095 -13.80979 -13.44105 -13.15428 -12.88052 -12.67752 -12.18925 -12.02417 -11.61484 -11.42108 -11.34843 -11.12694 -10.91322 -10.79764 -10.42503 -10.35682 -10.15240 -9.98803 -9.56294 -8.90450 -8.74063 -8.60748 -8.43621 -6.99874 -5.79216 -3.22700 2.84312 2.89265 3.36388 3.43021 3.43603 3.58640 4.17943 4.41301 4.52208 4.54012 4.67240 4.81276 4.89409 5.02978 5.11902 5.28843 5.31943 5.39345 5.51800 5.58693 5.66426 5.70515 5.73808 5.86048 5.93107 6.24603 6.39802 6.65369 6.68168 6.84124 6.95654 7.18876 7.38590 7.44966 7.74452 8.27349 8.35236 9.09976 9.22850 9.76644 10.24097 11.24082 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.004825 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.744085 B = 5801.240923 C = 6621.438989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.098 4.098 3 C 0.269 3.731 4 N -0.586 5.586 5 C -0.271 4.271 6 H 0.074 0.926 7 C 0.006 3.994 8 N -0.885 5.885 9 Si 0.899 3.101 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.164 3.836 14 C -0.156 4.156 15 C 0.521 3.479 16 O -0.539 6.539 17 N -0.626 5.626 18 C 0.073 3.927 19 C 0.046 3.954 20 O -0.383 6.383 21 C 0.048 3.952 22 C 0.076 3.924 23 H 0.190 0.810 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.255 0.745 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 -7.109 -10.048 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.101 4.101 3 C 0.144 3.856 4 N -0.306 5.306 5 C -0.399 4.399 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.527 5.527 9 Si 0.729 3.271 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.037 3.963 14 C -0.198 4.198 15 C 0.310 3.690 16 O -0.415 6.415 17 N -0.363 5.363 18 C -0.050 4.050 19 C -0.031 4.031 20 O -0.301 6.301 21 C -0.029 4.029 22 C -0.047 4.047 23 H 0.207 0.793 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.360 -7.402 -10.048 16.876 hybrid contribution -0.076 0.393 1.161 1.228 sum 11.284 -7.009 -8.887 15.982 Atomic orbital electron populations 1.24179 0.95361 1.04467 1.07733 1.24262 0.95343 0.96545 0.93975 1.17728 0.82962 0.91736 0.93216 1.44086 1.74666 1.03724 1.08087 1.19132 1.24771 1.10466 0.85565 0.90842 1.24945 0.96019 1.00569 0.97823 1.70132 1.19217 1.24069 1.39317 0.86426 0.79546 0.77986 0.83186 1.21018 1.21710 1.20993 1.20473 0.91178 0.89281 0.95406 1.22451 1.04692 0.92772 0.99911 1.21294 0.80872 0.89045 0.77746 1.90665 1.37743 1.51853 1.61283 1.48311 1.14438 1.20000 1.53516 1.22515 0.85926 0.93208 1.03374 1.23085 0.98162 0.87497 0.94386 1.87937 1.44058 1.32651 1.65465 1.22989 0.86255 0.92085 1.01588 1.22216 0.99290 0.86848 0.96349 0.79275 0.89015 0.94629 0.93446 0.93697 0.92625 0.88887 0.89574 0.90615 0.87944 0.92365 0.87617 0.92603 0.87844 0.88173 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.02 19.25 29.55 0.57 -6.45 16 2 C -0.10 -2.44 11.50 -37.13 -0.43 -2.87 16 3 C 0.27 6.31 5.41 -6.83 -0.04 6.27 16 4 N -0.59 -14.16 2.49 -176.57 -0.44 -14.60 16 5 C -0.27 -7.12 9.63 -15.06 -0.14 -7.27 16 6 H 0.07 1.89 7.92 -52.48 -0.42 1.47 16 7 C 0.01 0.17 4.82 -17.43 -0.08 0.08 16 8 N -0.88 -25.06 9.61 55.49 0.53 -24.53 16 9 Si 0.90 21.07 29.61 -169.99 -5.03 16.03 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.16 3.48 4.96 -4.04 -0.02 3.46 16 14 C -0.16 -2.56 4.40 -27.88 -0.12 -2.69 16 15 C 0.52 8.45 7.71 -10.98 -0.08 8.37 16 16 O -0.54 -10.64 15.45 5.55 0.09 -10.56 16 17 N -0.63 -8.02 3.01 -172.00 -0.52 -8.53 16 18 C 0.07 0.72 6.57 -3.31 -0.02 0.70 16 19 C 0.05 0.42 7.00 37.53 0.26 0.68 16 20 O -0.38 -4.06 10.74 -35.23 -0.38 -4.44 16 21 C 0.05 0.46 6.99 37.33 0.26 0.72 16 22 C 0.08 0.84 6.64 -3.52 -0.02 0.82 16 23 H 0.19 3.75 7.80 -54.10 -0.42 3.33 16 24 H 0.09 2.31 6.59 -51.93 -0.34 1.96 16 25 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.04 0.98 8.03 -51.93 -0.42 0.56 16 28 H 0.06 1.27 8.00 -51.93 -0.42 0.85 16 29 H 0.09 1.48 7.67 -51.93 -0.40 1.08 16 30 H 0.09 1.29 8.00 -51.93 -0.42 0.88 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.96 6.06 -51.93 -0.31 0.64 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.22 7.08 -51.93 -0.37 0.85 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -32.34 319.53 -6.41 -38.75 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.60 Total: 1.23 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 0.13 Total: 1.83 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.42 Total: -47.66 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.29 Total: -14.99 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.34 -6.41 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491505255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.202 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds