Wall clock time and date at job start Thu Apr 9 2020 13:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47313 * 329.90833 * 3 2 1 5 5 C 1.36931 * 120.00205 * 263.91381 * 4 3 2 6 6 H 1.08006 * 120.00310 * 199.39845 * 5 4 3 7 7 C 1.38819 * 119.99813 * 19.40218 * 5 4 3 8 8 N 1.31609 * 120.00105 * 22.26847 * 7 5 4 9 9 Si 1.86802 * 119.99685 * 202.27349 * 7 5 4 10 10 H 1.48500 * 109.47490 * 60.00063 * 9 7 5 11 11 H 1.48499 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47336 * 299.99698 * 9 7 5 13 13 C 1.46504 * 119.99912 * 83.91441 * 4 3 2 14 14 C 1.53001 * 109.46927 * 90.00238 * 13 4 3 15 15 C 1.50706 * 109.46939 * 180.02562 * 14 13 4 16 16 O 1.21285 * 119.99931 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99759 * 179.72133 * 15 14 13 18 18 C 1.47151 * 120.98456 * 359.97438 * 17 15 14 19 19 C 1.53718 * 108.16055 * 129.42988 * 18 17 15 20 20 O 1.42959 * 109.14477 * 52.53745 * 19 18 17 21 21 C 1.42958 * 114.17090 * 297.28430 * 20 19 18 22 22 C 1.47153 * 120.97736 * 180.27048 * 17 15 14 23 23 H 4.40636 * 5.51395 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.47158 * 209.90610 * 3 2 1 25 25 H 1.09005 * 109.47381 * 89.90840 * 3 2 1 26 26 H 0.97004 * 120.00066 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46904 * 329.99909 * 13 4 3 28 28 H 1.08998 * 109.47067 * 210.00277 * 13 4 3 29 29 H 1.08994 * 109.47710 * 59.99925 * 14 13 4 30 30 H 1.09005 * 109.47098 * 299.99538 * 14 13 4 31 31 H 1.08992 * 109.68153 * 249.20654 * 18 17 15 32 32 H 1.08998 * 109.68003 * 9.76628 * 18 17 15 33 33 H 1.09000 * 109.65704 * 292.57309 * 19 18 17 34 34 H 1.09005 * 109.48409 * 172.39966 * 19 18 17 35 35 H 1.09000 * 109.51586 * 302.66373 * 21 20 19 36 36 H 1.09000 * 109.55729 * 182.53220 * 21 20 19 37 37 H 1.08991 * 109.68448 * 350.24101 * 22 17 15 38 38 H 1.09003 * 109.67788 * 110.79618 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1942 0.6925 5 6 3.4816 -1.1251 2.0154 6 1 4.1206 -1.8817 2.4465 7 6 3.0118 -0.0826 2.8025 8 7 1.9271 0.5728 2.4476 9 14 3.9194 0.3901 4.3653 10 1 5.3086 0.7927 4.0285 11 1 3.2198 1.5245 5.0201 12 1 3.9511 -0.7714 5.2900 13 6 3.2528 -2.4630 -0.0303 14 6 4.6461 -2.5670 -0.6540 15 6 4.7672 -3.8720 -1.3981 16 8 3.8314 -4.6430 -1.4264 17 7 5.9136 -4.1798 -2.0364 18 6 7.0602 -3.2576 -2.0213 19 6 8.3074 -4.0507 -1.5988 20 8 8.4330 -5.2056 -2.4320 21 6 7.3479 -6.1294 -2.3194 22 6 6.0533 -5.4452 -2.7743 23 1 -1.0498 -0.0002 0.0003 24 1 3.0089 0.8917 0.5124 25 1 3.0093 -0.0008 -1.0277 26 1 1.5986 1.3011 2.9979 27 1 2.4987 -2.5048 -0.8164 28 1 3.1019 -3.2911 0.6622 29 1 5.4001 -2.5252 0.1320 30 1 4.7969 -1.7389 -1.3466 31 1 7.2077 -2.8390 -3.0167 32 1 6.8757 -2.4542 -1.3082 33 1 8.2095 -4.3611 -0.5586 34 1 9.1920 -3.4235 -1.7100 35 1 7.2465 -6.4474 -1.2818 36 1 7.5412 -6.9979 -2.9491 37 1 5.2018 -6.0910 -2.5603 38 1 6.1014 -5.2427 -3.8443 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491505255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:15 Heat of formation + Delta-G solvation = -13.259179 kcal Electronic energy + Delta-G solvation = -20317.642782 eV Core-core repulsion = 17162.249709 eV Total energy + Delta-G solvation = -3155.393073 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.32606 -39.37728 -37.92930 -35.78079 -34.00458 -33.45062 -32.49787 -31.04478 -28.82187 -27.93315 -26.19126 -24.92002 -23.36740 -22.22990 -20.07401 -19.37982 -18.47029 -18.05573 -17.43104 -16.92661 -16.84191 -16.61485 -16.04077 -15.93591 -15.49261 -15.40398 -14.99473 -14.57096 -14.42296 -13.67619 -13.56128 -13.27597 -13.06692 -13.03167 -12.69135 -12.61250 -12.33968 -12.29532 -11.98664 -11.81715 -11.73842 -11.22765 -10.88117 -10.78615 -10.65317 -10.33690 -9.60515 -8.93846 -7.81857 -5.26889 1.51131 1.52806 1.58066 1.59622 1.85363 2.32966 2.52288 2.60820 2.87829 3.29239 3.49863 3.76481 3.93369 4.02312 4.09975 4.12480 4.20579 4.26676 4.30511 4.34882 4.53668 4.66453 4.74316 4.78665 4.86272 4.92820 4.95821 5.03818 5.21401 5.34282 5.43972 5.63485 5.68738 6.10396 6.27039 6.30334 7.08930 7.12727 7.35081 7.81967 8.26724 9.19396 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.004825 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.744085 B = 5801.240923 C = 6621.438989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.136 4.136 3 C 0.271 3.729 4 N -0.597 5.597 5 C -0.275 4.275 6 H 0.075 0.925 7 C -0.043 4.043 8 N -0.913 5.913 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.300 1.300 12 H -0.284 1.284 13 C 0.169 3.831 14 C -0.138 4.138 15 C 0.520 3.480 16 O -0.584 6.584 17 N -0.620 5.620 18 C 0.068 3.932 19 C 0.046 3.954 20 O -0.393 6.393 21 C 0.053 3.947 22 C 0.072 3.928 23 H 0.220 0.780 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.247 0.753 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.133 0.867 35 H 0.050 0.950 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.791 -7.176 -10.731 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.138 4.138 3 C 0.145 3.855 4 N -0.317 5.317 5 C -0.404 4.404 6 H 0.093 0.907 7 C -0.240 4.240 8 N -0.558 5.558 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.226 1.226 12 H -0.210 1.210 13 C 0.042 3.958 14 C -0.180 4.180 15 C 0.310 3.690 16 O -0.464 6.464 17 N -0.355 5.355 18 C -0.054 4.054 19 C -0.031 4.031 20 O -0.311 6.311 21 C -0.024 4.024 22 C -0.050 4.050 23 H 0.236 0.764 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.103 0.897 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.418 -7.488 -10.766 18.762 hybrid contribution -0.703 0.351 1.313 1.530 sum 12.714 -7.137 -9.453 17.377 Atomic orbital electron populations 1.25015 0.96480 1.03384 1.06793 1.24847 0.96456 0.97603 0.94935 1.17758 0.82520 0.90671 0.94502 1.44260 1.74895 1.04755 1.07828 1.19420 1.24114 1.10270 0.86631 0.90705 1.25637 0.96686 1.00871 1.00771 1.70300 1.20604 1.24442 1.40411 0.85421 0.78704 0.77029 0.79691 1.19681 1.22646 1.20977 1.20410 0.93745 0.87309 0.94312 1.22114 1.01485 0.93952 1.00442 1.21142 0.81406 0.88491 0.77983 1.90652 1.39581 1.53001 1.63181 1.48334 1.14068 1.20946 1.52115 1.22790 0.84996 0.92983 1.04652 1.23223 0.98703 0.87304 0.93918 1.87935 1.44246 1.33138 1.65784 1.23029 0.85100 0.92486 1.01781 1.22370 0.99734 0.85991 0.96909 0.76356 0.91031 0.91399 0.94327 0.94916 0.95141 0.87943 0.87467 0.88972 0.87271 0.92806 0.84969 0.93208 0.85354 0.89686 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.90 19.25 74.32 1.43 -12.47 16 2 C -0.14 -6.75 11.50 31.12 0.36 -6.40 16 3 C 0.27 12.67 5.41 84.57 0.46 13.13 16 4 N -0.60 -28.83 2.49 -712.53 -1.77 -30.60 16 5 C -0.27 -14.45 9.63 84.04 0.81 -13.64 16 6 H 0.08 3.83 7.92 -2.91 -0.02 3.80 16 7 C -0.04 -2.31 4.82 84.87 0.41 -1.90 16 8 N -0.91 -52.25 9.61 21.65 0.21 -52.04 16 9 Si 0.96 43.36 29.61 68.60 2.03 45.39 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 C 0.17 7.19 4.96 86.38 0.43 7.62 16 14 C -0.14 -4.38 4.40 29.85 0.13 -4.24 16 15 C 0.52 16.50 7.71 87.66 0.68 17.18 16 16 O -0.58 -23.36 15.45 -3.04 -0.05 -23.40 16 17 N -0.62 -14.81 3.01 -816.47 -2.46 -17.27 16 18 C 0.07 1.14 6.57 86.50 0.57 1.71 16 19 C 0.05 0.69 7.00 72.22 0.51 1.19 16 20 O -0.39 -7.21 10.74 -148.98 -1.60 -8.81 16 21 C 0.05 0.90 6.99 72.09 0.50 1.40 16 22 C 0.07 1.50 6.64 86.37 0.57 2.07 16 23 H 0.22 8.38 7.80 -4.43 -0.03 8.34 16 24 H 0.07 3.63 6.59 -2.38 -0.02 3.61 16 25 H 0.07 2.67 8.12 -2.38 -0.02 2.65 16 26 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 28 H 0.03 1.42 8.00 -2.39 -0.02 1.40 16 29 H 0.10 3.08 7.67 -2.39 -0.02 3.06 16 30 H 0.11 2.96 8.00 -2.38 -0.02 2.94 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.71 6.06 -2.39 -0.01 1.69 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 2.05 7.08 -2.39 -0.02 2.03 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.72 319.53 4.24 -65.48 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.03 Total: 15.60 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.85 Total: 5.65 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -4.03 Total: -99.91 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.65 Total: -32.21 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.72 4.24 -65.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491505255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.219 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds