Wall clock time and date at job start Thu Apr 9 2020 13:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46941 * 255.14590 * 3 2 1 5 5 C 1.36942 * 119.99888 * 264.05198 * 4 3 2 6 6 H 1.07995 * 119.99381 * 201.23386 * 5 4 3 7 7 C 1.38808 * 119.99914 * 21.23183 * 5 4 3 8 8 N 1.31620 * 120.00198 * 11.98741 * 7 5 4 9 9 Si 1.86801 * 119.99764 * 191.97901 * 7 5 4 10 10 H 1.48501 * 109.46796 * 84.98543 * 9 7 5 11 11 H 1.48503 * 109.47276 * 204.98357 * 9 7 5 12 12 H 1.48493 * 109.47244 * 324.98682 * 9 7 5 13 13 C 1.46493 * 119.99833 * 84.05219 * 4 3 2 14 14 C 1.50696 * 109.47260 * 270.00061 * 13 4 3 15 15 O 1.21283 * 120.00174 * 359.97438 * 14 13 4 16 16 N 1.34779 * 120.00050 * 180.02562 * 14 13 4 17 17 C 1.46500 * 119.99893 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47000 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.27152 * 59.30047 * 18 17 16 20 20 C 1.54945 * 110.39323 * 181.44412 * 18 17 16 21 21 C 1.55303 * 100.94364 * 155.40209 * 20 18 17 22 22 C 1.54385 * 102.25243 * 325.87279 * 21 20 18 23 23 O 1.43230 * 107.58996 * 21.35009 * 22 21 20 24 24 H 4.40645 * 5.51485 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46685 * 135.14960 * 3 2 1 26 26 H 1.08992 * 109.47466 * 15.14529 * 3 2 1 27 27 H 0.97001 * 119.99991 * 179.97438 * 8 7 5 28 28 H 1.09008 * 109.47283 * 149.99683 * 13 4 3 29 29 H 1.09007 * 109.47479 * 30.00097 * 13 4 3 30 30 H 0.96994 * 120.00430 * 359.97438 * 16 14 13 31 31 H 1.09005 * 109.47523 * 59.99783 * 17 16 14 32 32 H 1.09004 * 109.47378 * 299.99570 * 17 16 14 33 33 H 1.08996 * 111.13086 * 273.32421 * 20 18 17 34 34 H 1.09007 * 111.12690 * 37.48793 * 20 18 17 35 35 H 1.08995 * 110.85110 * 207.67506 * 21 20 18 36 36 H 1.09004 * 111.02115 * 84.13941 * 21 20 18 37 37 H 1.08999 * 109.82392 * 261.84195 * 22 21 20 38 38 H 1.08995 * 109.82868 * 140.86706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3550 1.3351 5 6 3.4777 1.6503 1.6171 6 1 4.1400 1.8657 2.4425 7 6 2.9747 2.6861 0.8420 8 7 1.9935 2.4577 -0.0051 9 14 3.6900 4.4043 1.0015 10 1 4.8876 4.5246 0.1316 11 1 2.6738 5.4042 0.5857 12 1 4.0774 4.6501 2.4138 13 6 3.2548 -0.6764 2.3684 14 6 1.9637 -0.7676 3.1403 15 8 1.0344 -0.0422 2.8556 16 7 1.8421 -1.6547 4.1477 17 6 0.5871 -1.7430 4.8984 18 6 0.7131 -2.8203 5.9775 19 1 1.5305 -2.5800 6.6574 20 6 -0.6162 -2.9570 6.7618 21 6 -0.5043 -4.4169 7.2794 22 6 0.2430 -5.1177 6.1245 23 8 0.9272 -4.1067 5.3753 24 1 -1.0501 0.0002 -0.0001 25 1 3.0090 0.7294 -0.7248 26 1 3.0098 -0.9911 -0.2685 27 1 1.6418 3.1817 -0.5465 28 1 4.0668 -0.4169 3.0478 29 1 3.4666 -1.6375 1.8997 30 1 2.5854 -2.2347 4.3756 31 1 -0.2250 -2.0027 4.2193 32 1 0.3756 -0.7818 5.3670 33 1 -0.6587 -2.2489 7.5894 34 1 -1.4757 -2.8390 6.1018 35 1 -1.4923 -4.8540 7.4240 36 1 0.0763 -4.4617 8.2009 37 1 -0.4702 -5.6346 5.4825 38 1 0.9629 -5.8297 6.5281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491782749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:22 Heat of formation + Delta-G solvation = 7.397852 kcal Electronic energy + Delta-G solvation = -20308.257863 eV Core-core repulsion = 17153.760545 eV Total energy + Delta-G solvation = -3154.497317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72986 -38.44035 -35.60033 -33.97277 -32.35653 -31.33258 -31.14994 -30.11467 -27.22708 -25.85082 -24.94788 -22.11549 -21.73563 -21.15667 -19.45240 -17.32597 -17.12875 -16.55367 -16.32527 -15.62755 -15.32948 -14.96190 -14.66440 -14.25428 -13.66944 -13.47640 -13.18485 -13.03655 -12.62933 -12.26873 -12.06624 -11.97487 -11.49590 -11.42376 -11.22926 -11.12970 -11.05699 -10.78066 -10.63876 -10.17579 -9.95980 -9.65903 -8.97098 -8.71385 -8.53404 -8.29999 -8.13502 -6.85386 -5.64734 -3.14734 3.42185 3.48400 3.50626 3.52644 3.76444 3.94449 4.23790 4.43362 4.58195 4.63232 4.66687 4.77643 4.94305 5.01048 5.21287 5.41230 5.45893 5.50319 5.53819 5.60321 5.75792 5.79680 5.84210 5.99462 6.10584 6.20625 6.24755 6.37254 6.85075 6.85984 7.14565 7.40612 7.68774 7.80628 8.25268 8.43535 9.19411 9.31928 9.56035 9.84384 10.29683 11.36944 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030632 B = 0.004367 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.856032 B = 6410.230654 C = 6682.373823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.087 4.087 3 C 0.271 3.729 4 N -0.561 5.561 5 C -0.264 4.264 6 H 0.073 0.927 7 C 0.009 3.991 8 N -0.884 5.884 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.129 3.871 14 C 0.466 3.534 15 O -0.498 6.498 16 N -0.746 5.746 17 C 0.126 3.874 18 C 0.071 3.929 19 H 0.076 0.924 20 C -0.149 4.149 21 C -0.156 4.156 22 C 0.050 3.950 23 O -0.375 6.375 24 H 0.182 0.818 25 H 0.102 0.898 26 H 0.031 0.969 27 H 0.253 0.747 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -14.067 12.395 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.090 4.090 3 C 0.147 3.853 4 N -0.278 5.278 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.191 4.191 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.003 4.003 14 C 0.249 3.751 15 O -0.369 6.369 16 N -0.403 5.403 17 C 0.001 3.999 18 C 0.013 3.987 19 H 0.093 0.907 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.026 4.026 23 O -0.294 6.294 24 H 0.200 0.800 25 H 0.120 0.880 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.086 -13.359 11.816 17.957 hybrid contribution -0.199 0.782 0.724 1.084 sum -2.285 -12.577 12.540 17.907 Atomic orbital electron populations 1.23908 0.95097 1.08346 1.04263 1.23917 0.94981 0.93560 0.96517 1.17887 0.83208 0.96450 0.87786 1.44075 1.73114 1.05199 1.05431 1.19173 1.22440 0.82117 1.15557 0.90875 1.25077 0.96231 0.97856 0.99935 1.70054 1.24673 1.31075 1.26874 0.86246 0.77995 0.84323 0.77694 1.21332 1.21816 1.20699 1.21064 0.93028 0.94247 0.91982 1.23336 0.93081 0.79081 0.79577 1.90748 1.40476 1.40637 1.65040 1.46392 1.15403 1.41834 1.36693 1.21297 0.89111 0.96523 0.93007 1.23274 0.96860 0.84407 0.94167 0.90667 1.23250 0.98203 0.96792 1.00502 1.23114 1.01635 0.95667 0.98907 1.23101 0.95555 0.91322 0.92651 1.88473 1.72979 1.15463 1.52516 0.80048 0.88045 0.95126 0.93573 0.90649 0.91390 0.77396 0.91786 0.91126 0.89617 0.89855 0.90039 0.90551 0.91409 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.75 18.77 29.55 0.55 -7.20 16 2 C -0.09 -2.33 9.92 -37.12 -0.37 -2.70 16 3 C 0.27 6.82 5.45 -6.83 -0.04 6.78 16 4 N -0.56 -14.24 2.09 -177.95 -0.37 -14.61 16 5 C -0.26 -7.30 9.69 -15.06 -0.15 -7.45 16 6 H 0.07 1.96 7.84 -52.49 -0.41 1.55 16 7 C 0.01 0.25 5.07 -17.43 -0.09 0.16 16 8 N -0.88 -26.34 9.08 55.49 0.50 -25.84 16 9 Si 0.91 22.26 29.57 -169.99 -5.03 17.23 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.13 2.65 6.18 -5.20 -0.03 2.61 16 14 C 0.47 10.02 7.80 -10.99 -0.09 9.94 16 15 O -0.50 -13.39 14.43 5.55 0.08 -13.31 16 16 N -0.75 -12.33 5.49 -60.29 -0.33 -12.66 16 17 C 0.13 1.88 5.40 -4.04 -0.02 1.86 16 18 C 0.07 0.79 3.49 -25.70 -0.09 0.70 16 19 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 20 C -0.15 -1.32 6.57 -24.48 -0.16 -1.48 16 21 C -0.16 -1.13 7.02 -24.78 -0.17 -1.30 16 22 C 0.05 0.45 7.79 37.88 0.30 0.75 16 23 O -0.37 -4.65 10.94 -35.23 -0.39 -5.04 16 24 H 0.18 4.18 7.80 -54.09 -0.42 3.75 16 25 H 0.10 2.73 6.41 -51.93 -0.33 2.39 16 26 H 0.03 0.67 7.98 -51.93 -0.41 0.25 16 27 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.08 1.40 8.03 -51.92 -0.42 0.98 16 29 H 0.07 1.20 7.95 -51.93 -0.41 0.79 16 30 H 0.39 5.39 8.45 -40.82 -0.34 5.05 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.77 8.06 -51.92 -0.42 0.35 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -35.30 322.05 -6.72 -42.03 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.69 Total: 4.68 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.35 Total: 2.67 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.20 Total: -53.11 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.31 Total: -18.35 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.30 -6.72 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491782749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.425 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds