Wall clock time and date at job start Thu Apr 9 2020 13:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47182 * 184.37516 * 3 2 1 5 5 C 1.36932 * 120.00088 * 271.39306 * 4 3 2 6 6 H 1.08007 * 119.99933 * 326.17518 * 5 4 3 7 7 C 1.38807 * 120.00252 * 146.17649 * 5 4 3 8 8 N 1.31623 * 120.00041 * 336.46643 * 7 5 4 9 9 Si 1.86804 * 120.00174 * 156.46594 * 7 5 4 10 10 H 1.48495 * 109.46982 * 84.96060 * 9 7 5 11 11 H 1.48498 * 109.47113 * 204.96302 * 9 7 5 12 12 H 1.48495 * 109.46813 * 324.96139 * 9 7 5 13 13 C 1.46496 * 119.99568 * 91.38890 * 4 3 2 14 14 C 1.50694 * 109.47125 * 90.00532 * 13 4 3 15 15 O 1.21277 * 120.00270 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00160 * 179.97438 * 14 13 4 17 17 C 1.46504 * 120.00201 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47186 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.82580 * 305.56704 * 18 17 16 20 20 C 1.54379 * 109.82967 * 184.58452 * 18 17 16 21 21 C 1.55311 * 102.25351 * 219.12663 * 20 18 17 22 22 C 1.54946 * 100.94000 * 34.13886 * 21 20 18 23 23 O 1.43246 * 109.83171 * 66.45147 * 18 17 16 24 24 H 4.40644 * 5.51398 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.46582 * 64.37881 * 3 2 1 26 26 H 1.08997 * 109.47207 * 304.38229 * 3 2 1 27 27 H 0.96994 * 120.00123 * 180.02562 * 8 7 5 28 28 H 1.09009 * 109.46967 * 209.99935 * 13 4 3 29 29 H 1.08996 * 109.47308 * 329.99979 * 13 4 3 30 30 H 0.96995 * 119.99972 * 359.97438 * 16 14 13 31 31 H 1.08996 * 109.46618 * 299.99625 * 17 16 14 32 32 H 1.08996 * 109.47273 * 59.99777 * 17 16 14 33 33 H 1.08994 * 110.85153 * 337.32325 * 20 18 17 34 34 H 1.09001 * 110.84425 * 100.94488 * 20 18 17 35 35 H 1.08992 * 111.12964 * 276.21916 * 21 20 18 36 36 H 1.08998 * 111.15922 * 152.06691 * 21 20 18 37 37 H 1.08997 * 110.31104 * 204.63773 * 22 21 20 38 38 H 1.09005 * 110.31299 * 82.46434 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3781 0.1054 5 6 3.3345 2.1218 -1.0267 6 1 3.6716 1.6434 -1.9345 7 6 3.1049 3.4906 -1.0077 8 7 2.2869 4.0084 -0.1159 9 14 3.9568 4.5980 -2.2477 10 1 3.1711 4.6266 -3.5075 11 1 4.0580 5.9729 -1.6960 12 1 5.3184 4.0745 -2.5253 13 6 3.4067 1.9597 1.4219 14 6 4.8396 1.6904 1.8029 15 8 5.5617 1.0730 1.0491 16 7 5.3188 2.1356 2.9813 17 6 6.7117 1.8733 3.3518 18 6 6.9971 2.4820 4.7262 19 1 6.7352 3.5400 4.7236 20 6 8.4913 2.3112 5.0746 21 6 8.4402 1.9772 6.5905 22 6 7.1225 1.1659 6.6687 23 8 6.2377 1.7961 5.7287 24 1 -1.0501 -0.0004 0.0002 25 1 3.0095 -0.4436 -0.9267 26 1 3.0097 -0.5795 0.8481 27 1 2.1262 4.9648 -0.1028 28 1 3.2364 3.0358 1.3861 29 1 2.7436 1.5113 2.1617 30 1 4.7414 2.6298 3.5840 31 1 6.8814 0.7973 3.3883 32 1 7.3750 2.3210 2.6118 33 1 8.9295 1.4879 4.5105 34 1 9.0387 3.2374 4.8998 35 1 8.3790 2.8848 7.1909 36 1 9.2942 1.3689 6.8884 37 1 6.7052 1.2179 7.6743 38 1 7.2994 0.1285 6.3848 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491782750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:28 Heat of formation + Delta-G solvation = -5.005903 kcal Electronic energy + Delta-G solvation = -20122.393453 eV Core-core repulsion = 16967.358268 eV Total energy + Delta-G solvation = -3155.035184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76318 -38.45814 -35.61782 -33.99407 -32.41224 -32.33911 -30.80986 -30.18300 -27.51368 -25.96719 -25.01337 -22.20622 -21.74183 -21.12101 -19.55173 -17.37775 -17.16544 -17.00898 -16.22653 -15.66192 -15.37988 -14.94290 -14.45167 -14.19173 -13.75452 -13.57628 -13.40824 -13.26679 -12.91628 -12.32664 -12.10431 -11.96166 -11.90734 -11.46378 -11.39862 -11.06992 -11.05830 -10.87661 -10.50733 -10.21049 -10.13601 -9.64181 -9.38696 -9.12139 -8.90080 -8.56145 -8.38028 -6.74902 -5.85477 -3.37063 3.36838 3.43706 3.50099 3.54897 3.71148 3.77778 3.84646 4.04652 4.26223 4.52493 4.58869 4.67414 4.96076 5.03412 5.24832 5.28952 5.43774 5.47689 5.49693 5.52280 5.58421 5.65939 5.77653 5.85747 6.05859 6.25126 6.43139 6.52596 6.68387 6.86408 6.93103 7.12656 7.30883 7.81097 8.23770 8.44104 8.66073 9.03173 9.28283 9.71591 10.26102 11.16822 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.004969 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.354283 B = 5633.477798 C = 6544.564625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.160 4.160 3 C 0.241 3.759 4 N -0.552 5.552 5 C -0.246 4.246 6 H 0.067 0.933 7 C 0.007 3.993 8 N -0.889 5.889 9 Si 0.900 3.100 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.125 3.875 14 C 0.485 3.515 15 O -0.539 6.539 16 N -0.741 5.741 17 C 0.114 3.886 18 C 0.069 3.931 19 H 0.087 0.913 20 C -0.148 4.148 21 C -0.156 4.156 22 C 0.049 3.951 23 O -0.373 6.373 24 H 0.201 0.799 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.256 0.744 28 H 0.129 0.871 29 H 0.057 0.943 30 H 0.397 0.603 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.155 -2.666 13.778 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.163 4.163 3 C 0.115 3.885 4 N -0.268 5.268 5 C -0.375 4.375 6 H 0.084 0.916 7 C -0.193 4.193 8 N -0.532 5.532 9 Si 0.729 3.271 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.006 4.006 14 C 0.272 3.728 15 O -0.414 6.414 16 N -0.397 5.397 17 C -0.012 4.012 18 C 0.011 3.989 19 H 0.105 0.895 20 C -0.187 4.187 21 C -0.194 4.194 22 C -0.027 4.027 23 O -0.293 6.293 24 H 0.218 0.782 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.429 -2.964 13.192 16.484 hybrid contribution 0.183 0.998 -0.238 1.043 sum 9.612 -1.966 12.954 16.250 Atomic orbital electron populations 1.24603 0.95668 1.03725 1.04167 1.25185 0.96162 0.97478 0.97489 1.18157 0.81728 0.88320 1.00309 1.43383 1.71420 1.09841 1.02166 1.19095 1.37785 0.89692 0.90969 0.91550 1.25096 0.97244 0.98387 0.98538 1.69953 1.33533 1.11972 1.37776 0.86342 0.80191 0.79627 0.80906 1.21039 1.21449 1.20262 1.21003 0.87734 1.04759 0.87079 1.23180 0.93015 0.77353 0.79292 1.90560 1.60245 1.40179 1.50437 1.46235 1.11761 1.60206 1.21479 1.21568 0.85292 1.00489 0.93801 1.23047 0.90806 0.96865 0.88189 0.89528 1.23114 0.95999 1.03424 0.96115 1.23264 0.98622 1.01058 0.96427 1.23377 0.89418 0.96375 0.93557 1.88487 1.31768 1.69820 1.39201 0.78172 0.90993 0.91974 0.93392 0.85465 0.92444 0.76907 0.91975 0.91298 0.89989 0.89698 0.90363 0.89936 0.89813 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.43 19.25 29.55 0.57 -4.86 16 2 C -0.16 -3.64 13.67 -37.12 -0.51 -4.15 16 3 C 0.24 5.49 6.14 -6.83 -0.04 5.45 16 4 N -0.55 -14.30 1.90 -177.95 -0.34 -14.64 16 5 C -0.25 -6.96 9.48 -15.06 -0.14 -7.10 16 6 H 0.07 1.89 7.93 -52.48 -0.42 1.48 16 7 C 0.01 0.18 4.94 -17.43 -0.09 0.10 16 8 N -0.89 -25.28 11.34 55.49 0.63 -24.65 16 9 Si 0.90 22.08 29.61 -169.99 -5.03 17.05 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.12 2.95 5.77 -5.20 -0.03 2.92 16 14 C 0.49 10.76 7.90 -10.99 -0.09 10.68 16 15 O -0.54 -13.75 16.43 5.56 0.09 -13.66 16 16 N -0.74 -12.98 5.53 -60.30 -0.33 -13.31 16 17 C 0.11 1.69 5.21 -4.04 -0.02 1.67 16 18 C 0.07 0.79 3.56 -26.01 -0.09 0.70 16 19 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.15 -1.28 6.54 -24.78 -0.16 -1.45 16 21 C -0.16 -1.15 7.16 -24.48 -0.18 -1.32 16 22 C 0.05 0.45 7.78 38.18 0.30 0.75 16 23 O -0.37 -4.72 10.99 -35.23 -0.39 -5.10 16 24 H 0.20 3.31 7.80 -54.08 -0.42 2.89 16 25 H 0.07 1.59 8.05 -51.93 -0.42 1.18 16 26 H 0.06 1.30 8.06 -51.93 -0.42 0.88 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.13 3.28 5.33 -51.92 -0.28 3.00 16 29 H 0.06 1.25 8.07 -51.93 -0.42 0.84 16 30 H 0.40 6.18 8.47 -40.82 -0.35 5.84 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.70 7.85 -51.93 -0.41 0.30 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -33.50 329.53 -6.53 -40.03 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.64 Total: 5.94 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.48 Total: 3.39 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.04 Total: -52.60 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.30 Total: -18.76 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.50 -6.53 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491782750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.023 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds