Wall clock time and date at job start Thu Apr 9 2020 13:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47182 * 184.37516 * 3 2 1 5 5 C 1.36932 * 120.00088 * 271.39306 * 4 3 2 6 6 H 1.08007 * 119.99933 * 326.17518 * 5 4 3 7 7 C 1.38807 * 120.00252 * 146.17649 * 5 4 3 8 8 N 1.31623 * 120.00041 * 336.46643 * 7 5 4 9 9 Si 1.86804 * 120.00174 * 156.46594 * 7 5 4 10 10 H 1.48495 * 109.46982 * 84.96060 * 9 7 5 11 11 H 1.48498 * 109.47113 * 204.96302 * 9 7 5 12 12 H 1.48495 * 109.46813 * 324.96139 * 9 7 5 13 13 C 1.46496 * 119.99568 * 91.38890 * 4 3 2 14 14 C 1.50694 * 109.47125 * 90.00532 * 13 4 3 15 15 O 1.21277 * 120.00270 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00160 * 179.97438 * 14 13 4 17 17 C 1.46504 * 120.00201 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47186 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.82580 * 305.56704 * 18 17 16 20 20 C 1.54379 * 109.82967 * 184.58452 * 18 17 16 21 21 C 1.55311 * 102.25351 * 219.12663 * 20 18 17 22 22 C 1.54946 * 100.94000 * 34.13886 * 21 20 18 23 23 O 1.43246 * 109.83171 * 66.45147 * 18 17 16 24 24 H 4.40644 * 5.51398 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.46582 * 64.37881 * 3 2 1 26 26 H 1.08997 * 109.47207 * 304.38229 * 3 2 1 27 27 H 0.96994 * 120.00123 * 180.02562 * 8 7 5 28 28 H 1.09009 * 109.46967 * 209.99935 * 13 4 3 29 29 H 1.08996 * 109.47308 * 329.99979 * 13 4 3 30 30 H 0.96995 * 119.99972 * 359.97438 * 16 14 13 31 31 H 1.08996 * 109.46618 * 299.99625 * 17 16 14 32 32 H 1.08996 * 109.47273 * 59.99777 * 17 16 14 33 33 H 1.08994 * 110.85153 * 337.32325 * 20 18 17 34 34 H 1.09001 * 110.84425 * 100.94488 * 20 18 17 35 35 H 1.08992 * 111.12964 * 276.21916 * 21 20 18 36 36 H 1.08998 * 111.15922 * 152.06691 * 21 20 18 37 37 H 1.08997 * 110.31104 * 204.63773 * 22 21 20 38 38 H 1.09005 * 110.31299 * 82.46434 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3781 0.1054 5 6 3.3345 2.1218 -1.0267 6 1 3.6716 1.6434 -1.9345 7 6 3.1049 3.4906 -1.0077 8 7 2.2869 4.0084 -0.1159 9 14 3.9568 4.5980 -2.2477 10 1 3.1711 4.6266 -3.5075 11 1 4.0580 5.9729 -1.6960 12 1 5.3184 4.0745 -2.5253 13 6 3.4067 1.9597 1.4219 14 6 4.8396 1.6904 1.8029 15 8 5.5617 1.0730 1.0491 16 7 5.3188 2.1356 2.9813 17 6 6.7117 1.8733 3.3518 18 6 6.9971 2.4820 4.7262 19 1 6.7352 3.5400 4.7236 20 6 8.4913 2.3112 5.0746 21 6 8.4402 1.9772 6.5905 22 6 7.1225 1.1659 6.6687 23 8 6.2377 1.7961 5.7287 24 1 -1.0501 -0.0004 0.0002 25 1 3.0095 -0.4436 -0.9267 26 1 3.0097 -0.5795 0.8481 27 1 2.1262 4.9648 -0.1028 28 1 3.2364 3.0358 1.3861 29 1 2.7436 1.5113 2.1617 30 1 4.7414 2.6298 3.5840 31 1 6.8814 0.7973 3.3883 32 1 7.3750 2.3210 2.6118 33 1 8.9295 1.4879 4.5105 34 1 9.0387 3.2374 4.8998 35 1 8.3790 2.8848 7.1909 36 1 9.2942 1.3689 6.8884 37 1 6.7052 1.2179 7.6743 38 1 7.2994 0.1285 6.3848 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491782750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:26 Heat of formation + Delta-G solvation = -27.683491 kcal Electronic energy + Delta-G solvation = -20123.376827 eV Core-core repulsion = 16967.358268 eV Total energy + Delta-G solvation = -3156.018558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82907 -39.99793 -37.47435 -35.52183 -34.29880 -33.12048 -32.70677 -31.36542 -29.11318 -27.90206 -26.24968 -23.84239 -22.65574 -22.15912 -21.20567 -19.15969 -18.85482 -17.98205 -17.70278 -16.93713 -16.83011 -16.67641 -16.08040 -15.50316 -15.38139 -15.19699 -14.93667 -14.39149 -14.25776 -13.84737 -13.73868 -13.35047 -13.04964 -12.84456 -12.66643 -12.50352 -12.31838 -12.22512 -12.09346 -12.07209 -11.71320 -11.13752 -10.84616 -10.76891 -10.61114 -10.52681 -9.93458 -8.77431 -7.93932 -5.49808 1.42255 1.44621 1.55878 1.94289 2.00645 2.13678 2.40023 2.52532 2.91700 3.20033 3.54795 3.72714 3.78100 3.85225 3.96455 4.18414 4.21239 4.34830 4.43974 4.59601 4.66167 4.69757 4.73483 4.83598 4.88721 4.93055 4.98621 5.05532 5.25483 5.27115 5.38306 5.62360 5.63698 6.07285 6.33534 6.70797 6.95749 7.04142 7.51946 7.70670 8.20753 9.05526 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.004969 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.354283 B = 5633.477798 C = 6544.564625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.212 4.212 3 C 0.241 3.759 4 N -0.568 5.568 5 C -0.265 4.265 6 H 0.053 0.947 7 C -0.031 4.031 8 N -0.909 5.909 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.127 3.873 14 C 0.488 3.512 15 O -0.578 6.578 16 N -0.725 5.725 17 C 0.112 3.888 18 C 0.074 3.926 19 H 0.094 0.906 20 C -0.146 4.146 21 C -0.145 4.145 22 C 0.038 3.962 23 O -0.399 6.399 24 H 0.241 0.759 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.257 0.743 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.408 0.592 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 -2.159 15.075 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.215 4.215 3 C 0.116 3.884 4 N -0.286 5.286 5 C -0.395 4.395 6 H 0.070 0.930 7 C -0.229 4.229 8 N -0.553 5.553 9 Si 0.784 3.216 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.210 1.210 13 C -0.003 4.003 14 C 0.274 3.726 15 O -0.456 6.456 16 N -0.379 5.379 17 C -0.012 4.012 18 C 0.016 3.984 19 H 0.111 0.889 20 C -0.184 4.184 21 C -0.183 4.183 22 C -0.038 4.038 23 O -0.319 6.319 24 H 0.258 0.742 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.244 0.756 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.846 -2.454 14.543 17.734 hybrid contribution 0.001 0.761 -0.570 0.950 sum 9.847 -1.693 13.974 17.179 Atomic orbital electron populations 1.25529 0.96630 1.01218 1.01848 1.25277 0.96774 0.99712 0.99700 1.18114 0.82469 0.87102 1.00732 1.43519 1.72281 1.10597 1.02177 1.19209 1.38228 0.90583 0.91522 0.92968 1.25686 0.97702 0.99125 1.00374 1.70039 1.34202 1.12114 1.38934 0.85480 0.78735 0.78158 0.79236 1.20420 1.20644 1.20958 1.20918 0.89044 1.03536 0.86816 1.22784 0.92321 0.77273 0.80227 1.90537 1.60878 1.42226 1.52007 1.46034 1.13183 1.58682 1.20018 1.21750 0.83199 1.00193 0.96063 1.23020 0.92835 0.96569 0.86016 0.88856 1.23138 0.93787 1.04353 0.97134 1.23253 0.98172 1.01465 0.95385 1.23616 0.90210 0.96450 0.93493 1.88459 1.33399 1.70160 1.39841 0.74242 0.91348 0.90712 0.93334 0.87348 0.91151 0.75625 0.93002 0.91754 0.90076 0.88007 0.89332 0.87950 0.88429 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.22 19.25 74.32 1.43 -7.79 16 2 C -0.21 -9.55 13.67 31.13 0.43 -9.13 16 3 C 0.24 11.21 6.14 84.57 0.52 11.73 16 4 N -0.57 -30.04 1.90 -716.92 -1.36 -31.41 16 5 C -0.27 -15.33 9.48 84.03 0.80 -14.54 16 6 H 0.05 3.08 7.93 -2.91 -0.02 3.06 16 7 C -0.03 -1.77 4.94 84.86 0.42 -1.35 16 8 N -0.91 -51.90 11.34 21.65 0.25 -51.66 16 9 Si 0.96 45.67 29.61 68.60 2.03 47.70 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 13 C 0.13 6.10 5.77 85.63 0.49 6.59 16 14 C 0.49 21.94 7.90 87.66 0.69 22.63 16 15 O -0.58 -30.12 16.43 -3.02 -0.05 -30.17 16 16 N -0.73 -25.32 5.53 -463.07 -2.56 -27.88 16 17 C 0.11 3.31 5.21 86.38 0.45 3.76 16 18 C 0.07 1.59 3.56 31.06 0.11 1.70 16 19 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.15 -2.20 6.54 31.86 0.21 -1.99 16 21 C -0.15 -1.72 7.16 32.05 0.23 -1.49 16 22 C 0.04 0.63 7.78 72.65 0.56 1.20 16 23 O -0.40 -9.54 10.99 -148.98 -1.64 -11.17 16 24 H 0.24 7.06 7.80 -4.41 -0.03 7.02 16 25 H 0.07 3.14 8.05 -2.39 -0.02 3.12 16 26 H 0.07 3.18 8.06 -2.39 -0.02 3.16 16 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.11 5.69 5.33 -2.38 -0.01 5.68 16 29 H 0.07 3.10 8.07 -2.39 -0.02 3.08 16 30 H 0.41 12.51 8.47 -92.71 -0.79 11.73 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 1.24 7.85 -2.39 -0.02 1.23 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -72.13 329.53 3.27 -68.86 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.26 Total: 24.40 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 6.34 Total: 11.32 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.68 Total: -110.94 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.69 Total: -41.35 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.13 3.27 -68.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491782750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.178 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds