Wall clock time and date at job start Thu Apr 9 2020 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.55069 * 2 1 4 4 O 1.44371 * 110.62023 * 122.88259 * 2 1 3 5 5 C 1.43750 * 106.97841 * 158.55903 * 4 2 1 6 6 H 1.08999 * 109.87532 * 92.90814 * 5 4 2 7 7 C 1.52995 * 109.88134 * 213.91437 * 5 4 2 8 8 C 1.54098 * 107.28995 * 333.48638 * 5 4 2 9 9 H 1.09004 * 110.48638 * 120.70585 * 8 5 4 10 10 C 1.52995 * 110.48967 * 243.35119 * 8 5 4 11 11 C 1.54811 * 104.19134 * 2.03008 * 8 5 4 12 12 H 1.08997 * 110.91134 * 139.07344 * 11 8 5 13 13 C 1.50699 * 110.90931 * 262.68333 * 11 8 5 14 14 O 1.21295 * 119.99951 * 73.64872 * 13 11 8 15 15 N 1.34775 * 120.00031 * 253.65774 * 13 11 8 16 16 C 1.37094 * 120.00015 * 174.96654 * 15 13 11 17 17 H 1.07990 * 120.00312 * 343.54369 * 16 15 13 18 18 C 1.38954 * 119.99662 * 163.53566 * 16 15 13 19 19 N 1.31410 * 120.00045 * 358.10125 * 18 16 15 20 20 Si 1.86800 * 119.99700 * 178.10121 * 18 16 15 21 21 H 1.48498 * 109.47079 * 60.00436 * 20 18 16 22 22 H 1.48500 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47407 * 300.00249 * 20 18 16 24 24 C 1.46501 * 119.99644 * 354.95933 * 15 13 11 25 25 C 1.47197 * 109.47522 * 266.14805 * 24 15 13 26 26 N 4.98733 * 66.04625 * 271.85197 * 2 1 3 27 27 H 1.09006 * 109.46884 * 305.13756 * 1 2 3 28 28 H 1.09000 * 109.47443 * 185.14124 * 1 2 3 29 29 H 1.09000 * 109.47333 * 65.13248 * 1 2 3 30 30 H 1.08993 * 109.47336 * 58.54213 * 7 5 4 31 31 H 1.08993 * 109.47107 * 178.54661 * 7 5 4 32 32 H 1.09005 * 109.47063 * 298.54277 * 7 5 4 33 33 H 1.09000 * 109.46880 * 54.92156 * 10 8 5 34 34 H 1.08996 * 109.47402 * 174.91768 * 10 8 5 35 35 H 1.08997 * 109.47200 * 294.91948 * 10 8 5 36 36 H 0.97008 * 119.99809 * 179.97438 * 19 18 16 37 37 H 1.09004 * 109.47075 * 26.15719 * 24 15 13 38 38 H 1.09006 * 109.46842 * 146.15424 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 8 2.0384 -0.7336 1.1347 5 6 3.3840 -1.1243 0.8133 6 1 4.0854 -0.3765 1.1835 7 6 3.6948 -2.4846 1.4409 8 6 3.4794 -1.2178 -0.7218 9 1 4.2406 -0.5348 -1.0991 10 6 3.7854 -2.6535 -1.1529 11 6 2.0758 -0.7911 -1.2161 12 1 2.1508 -0.1506 -2.0948 13 6 1.2173 -1.9960 -1.5029 14 8 0.7625 -2.6484 -0.5870 15 7 0.9550 -2.3488 -2.7769 16 6 0.2615 -3.5017 -3.0401 17 1 0.1557 -4.2551 -2.2737 18 6 -0.3055 -3.7007 -4.2930 19 7 -0.2089 -2.7680 -5.2136 20 14 -1.2049 -5.2942 -4.6686 21 1 -2.3447 -5.4524 -3.7299 22 1 -1.7132 -5.2588 -6.0635 23 1 -0.2716 -6.4385 -4.5112 24 6 1.4110 -1.5000 -3.8805 25 6 0.3353 -0.5703 -4.2615 26 7 -0.4948 0.1473 -4.5554 27 1 -0.3633 0.5915 0.8405 28 1 -0.3634 -1.0235 0.0921 29 1 -0.3634 0.4321 -0.9324 30 1 2.9850 -3.2252 1.0727 31 1 4.7070 -2.7861 1.1717 32 1 3.6137 -2.4114 2.5254 33 1 3.0391 -3.3265 -0.7306 34 1 3.7600 -2.7196 -2.2406 35 1 4.7748 -2.9375 -0.7946 36 1 -0.6044 -2.9071 -6.0884 37 1 2.2867 -0.9329 -3.5649 38 1 1.6713 -2.1243 -4.7354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528325472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:31 Heat of formation + Delta-G solvation = -33.969537 kcal Electronic energy + Delta-G solvation = -21927.264907 eV Core-core repulsion = 18770.973766 eV Total energy + Delta-G solvation = -3156.291142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.40457 -37.92775 -35.67565 -34.20615 -33.73308 -32.33469 -31.51585 -28.61661 -27.54831 -26.72029 -25.09657 -23.46928 -21.63657 -19.52112 -18.56252 -17.93934 -17.28117 -16.27342 -15.75649 -15.25285 -14.66227 -14.37397 -14.29361 -13.85371 -13.58326 -13.01814 -12.69704 -12.51375 -12.24462 -12.18401 -11.86126 -11.71124 -11.49475 -11.37247 -11.23203 -11.19678 -11.05057 -10.91227 -10.58808 -10.42959 -10.42328 -10.40136 -10.19472 -10.15789 -9.22386 -9.19535 -8.42700 -8.06448 -6.44374 -4.03891 3.11169 3.20477 3.22421 3.54506 3.80560 4.07283 4.15053 4.20427 4.71913 4.79737 4.94325 5.06290 5.15440 5.26137 5.32797 5.52805 5.63446 5.68162 5.70928 5.76936 5.83736 5.95174 6.04212 6.07036 6.14361 6.19603 6.31585 6.39526 6.43960 6.49075 6.73696 6.77991 6.89501 7.41008 7.43427 7.89072 8.30159 8.88874 9.01723 9.20060 9.76084 10.55979 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.007620 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.216115 B = 3673.492257 C = 4132.701426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 H 0.066 0.934 4 O -0.357 6.357 5 C 0.082 3.918 6 H 0.058 0.942 7 C -0.151 4.151 8 C -0.105 4.105 9 H 0.082 0.918 10 C -0.152 4.152 11 C -0.143 4.143 12 H 0.094 0.906 13 C 0.480 3.520 14 O -0.555 6.555 15 N -0.450 5.450 16 C -0.296 4.296 17 H 0.107 0.893 18 C 0.027 3.973 19 N -0.896 5.896 20 Si 0.935 3.065 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.222 3.778 25 C 0.259 3.741 26 N -0.489 5.489 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.274 0.726 37 H 0.074 0.926 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.051 2.682 4.915 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.083 0.917 4 O -0.276 6.276 5 C 0.024 3.976 6 H 0.076 0.924 7 C -0.208 4.208 8 C -0.124 4.124 9 H 0.100 0.900 10 C -0.209 4.209 11 C -0.165 4.165 12 H 0.112 0.888 13 C 0.268 3.732 14 O -0.436 6.436 15 N -0.171 5.171 16 C -0.424 4.424 17 H 0.124 0.876 18 C -0.173 4.173 19 N -0.538 5.538 20 Si 0.762 3.238 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.094 3.906 25 C -0.059 4.059 26 N -0.171 5.171 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.408 3.326 4.936 10.301 hybrid contribution -0.089 -0.805 -0.700 1.070 sum 8.319 2.521 4.236 9.670 Atomic orbital electron populations 1.21954 0.93084 1.05250 1.01153 1.22783 0.95646 0.93451 0.84007 0.91663 1.88915 1.27208 1.73467 1.38039 1.22618 0.85044 0.96382 0.93578 0.92412 1.22004 1.01549 0.96892 1.00358 1.22437 0.95558 0.98907 0.95493 0.89996 1.22040 1.01724 0.95416 1.01712 1.23086 0.95624 0.97938 0.99870 0.88828 1.19469 0.84393 0.86336 0.82994 1.90550 1.54600 1.55007 1.43482 1.43659 1.49904 1.20648 1.02839 1.19722 1.29162 0.94756 0.98725 0.87562 1.25285 0.96980 0.99284 0.95787 1.69565 1.45631 1.32822 1.05755 0.85829 0.79708 0.80829 0.77415 1.19931 1.20973 1.19788 1.18924 0.88248 0.89680 0.93701 1.29137 0.94478 0.90391 0.91881 1.80872 1.09944 1.16006 1.10239 0.92788 0.88987 0.91951 0.90450 0.91815 0.92909 0.90242 0.92215 0.92745 0.91512 0.90788 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 8.98 37.16 0.33 -2.54 16 2 C 0.10 1.68 3.67 -25.67 -0.09 1.58 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 O -0.36 -6.44 10.44 -40.09 -0.42 -6.86 16 5 C 0.08 1.21 4.05 -26.16 -0.11 1.10 16 6 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.15 -2.11 8.41 37.16 0.31 -1.80 16 8 C -0.10 -1.50 3.58 -89.09 -0.32 -1.82 16 9 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 10 C -0.15 -2.24 7.06 37.16 0.26 -1.97 16 11 C -0.14 -2.43 2.70 -89.76 -0.24 -2.67 16 12 H 0.09 1.44 5.80 -51.93 -0.30 1.14 16 13 C 0.48 10.21 3.79 -10.99 -0.04 10.17 16 14 O -0.56 -13.62 13.37 0.69 0.01 -13.61 16 15 N -0.45 -10.05 2.59 -117.93 -0.31 -10.36 16 16 C -0.30 -7.39 9.40 -14.93 -0.14 -7.53 16 17 H 0.11 2.78 7.32 -52.49 -0.38 2.40 16 18 C 0.03 0.67 5.33 -17.47 -0.09 0.58 16 19 N -0.90 -22.02 8.15 55.50 0.45 -21.57 16 20 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C 0.22 4.37 4.93 -6.83 -0.03 4.33 16 25 C 0.26 5.77 13.14 -20.76 -0.27 5.49 16 26 N -0.49 -11.76 18.54 42.15 0.78 -10.98 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 2.00 5.83 -51.93 -0.30 1.70 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.29 6.55 -51.93 -0.34 0.95 16 31 H 0.06 0.73 7.02 -51.93 -0.36 0.36 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.42 4.96 -51.93 -0.26 1.16 16 34 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 35 H 0.05 0.66 7.06 -51.93 -0.37 0.29 16 36 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.07 1.15 5.82 -51.93 -0.30 0.85 16 38 H 0.14 2.77 6.41 -51.93 -0.33 2.44 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -29.25 301.05 -5.45 -34.69 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.05 Total: 4.28 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.43 Total: 4.92 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.93 Total: -42.91 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.41 Total: -20.47 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.25 -5.45 -34.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.724 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds