Wall clock time and date at job start Thu Apr 9 2020 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.55069 * 2 1 4 4 O 1.44371 * 110.62023 * 122.88259 * 2 1 3 5 5 C 1.43750 * 106.97841 * 158.55903 * 4 2 1 6 6 H 1.08999 * 109.87532 * 92.90814 * 5 4 2 7 7 C 1.52995 * 109.88134 * 213.91437 * 5 4 2 8 8 C 1.54098 * 107.28995 * 333.48638 * 5 4 2 9 9 H 1.09004 * 110.48638 * 120.70585 * 8 5 4 10 10 C 1.52995 * 110.48967 * 243.35119 * 8 5 4 11 11 C 1.54811 * 104.19134 * 2.03008 * 8 5 4 12 12 H 1.08997 * 110.91134 * 139.07344 * 11 8 5 13 13 C 1.50699 * 110.90931 * 262.68333 * 11 8 5 14 14 O 1.21295 * 119.99951 * 73.64872 * 13 11 8 15 15 N 1.34775 * 120.00031 * 253.65774 * 13 11 8 16 16 C 1.37094 * 120.00015 * 174.96654 * 15 13 11 17 17 H 1.07990 * 120.00312 * 343.54369 * 16 15 13 18 18 C 1.38954 * 119.99662 * 163.53566 * 16 15 13 19 19 N 1.31410 * 120.00045 * 358.10125 * 18 16 15 20 20 Si 1.86800 * 119.99700 * 178.10121 * 18 16 15 21 21 H 1.48498 * 109.47079 * 60.00436 * 20 18 16 22 22 H 1.48500 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47407 * 300.00249 * 20 18 16 24 24 C 1.46501 * 119.99644 * 354.95933 * 15 13 11 25 25 C 1.47197 * 109.47522 * 266.14805 * 24 15 13 26 26 N 4.98733 * 66.04625 * 271.85197 * 2 1 3 27 27 H 1.09006 * 109.46884 * 305.13756 * 1 2 3 28 28 H 1.09000 * 109.47443 * 185.14124 * 1 2 3 29 29 H 1.09000 * 109.47333 * 65.13248 * 1 2 3 30 30 H 1.08993 * 109.47336 * 58.54213 * 7 5 4 31 31 H 1.08993 * 109.47107 * 178.54661 * 7 5 4 32 32 H 1.09005 * 109.47063 * 298.54277 * 7 5 4 33 33 H 1.09000 * 109.46880 * 54.92156 * 10 8 5 34 34 H 1.08996 * 109.47402 * 174.91768 * 10 8 5 35 35 H 1.08997 * 109.47200 * 294.91948 * 10 8 5 36 36 H 0.97008 * 119.99809 * 179.97438 * 19 18 16 37 37 H 1.09004 * 109.47075 * 26.15719 * 24 15 13 38 38 H 1.09006 * 109.46842 * 146.15424 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 8 2.0384 -0.7336 1.1347 5 6 3.3840 -1.1243 0.8133 6 1 4.0854 -0.3765 1.1835 7 6 3.6948 -2.4846 1.4409 8 6 3.4794 -1.2178 -0.7218 9 1 4.2406 -0.5348 -1.0991 10 6 3.7854 -2.6535 -1.1529 11 6 2.0758 -0.7911 -1.2161 12 1 2.1508 -0.1506 -2.0948 13 6 1.2173 -1.9960 -1.5029 14 8 0.7625 -2.6484 -0.5870 15 7 0.9550 -2.3488 -2.7769 16 6 0.2615 -3.5017 -3.0401 17 1 0.1557 -4.2551 -2.2737 18 6 -0.3055 -3.7007 -4.2930 19 7 -0.2089 -2.7680 -5.2136 20 14 -1.2049 -5.2942 -4.6686 21 1 -2.3447 -5.4524 -3.7299 22 1 -1.7132 -5.2588 -6.0635 23 1 -0.2716 -6.4385 -4.5112 24 6 1.4110 -1.5000 -3.8805 25 6 0.3353 -0.5703 -4.2615 26 7 -0.4948 0.1473 -4.5554 27 1 -0.3633 0.5915 0.8405 28 1 -0.3634 -1.0235 0.0921 29 1 -0.3634 0.4321 -0.9324 30 1 2.9850 -3.2252 1.0727 31 1 4.7070 -2.7861 1.1717 32 1 3.6137 -2.4114 2.5254 33 1 3.0391 -3.3265 -0.7306 34 1 3.7600 -2.7196 -2.2406 35 1 4.7748 -2.9375 -0.7946 36 1 -0.6044 -2.9071 -6.0884 37 1 2.2867 -0.9329 -3.5649 38 1 1.6713 -2.1243 -4.7354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528325472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:31 Heat of formation + Delta-G solvation = -51.914171 kcal Electronic energy + Delta-G solvation = -21928.043045 eV Core-core repulsion = 18770.973766 eV Total energy + Delta-G solvation = -3157.069280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80245 -39.46546 -37.44121 -36.01511 -34.95345 -33.89198 -33.13317 -29.89304 -29.21470 -28.03061 -26.74477 -24.79334 -23.09068 -20.76481 -20.03839 -19.72988 -18.70700 -17.96182 -17.10272 -16.82505 -16.12609 -15.97349 -15.68212 -15.41972 -14.82519 -14.70503 -14.22395 -14.07696 -13.64619 -13.54347 -13.40172 -13.30672 -13.05620 -12.94226 -12.81936 -12.58975 -12.45330 -12.35362 -12.26858 -12.15050 -11.99111 -11.67507 -11.52169 -11.37960 -11.00582 -10.41270 -10.13265 -9.88150 -8.30725 -5.95137 1.38477 1.43441 1.50989 1.88120 2.10011 2.33452 2.45354 2.89949 3.07387 3.17471 3.56123 3.70258 3.81493 3.99395 4.10196 4.13704 4.36996 4.44169 4.51205 4.55430 4.63167 4.67904 4.72022 4.83976 4.92092 4.98954 5.04815 5.11941 5.17157 5.33166 5.34336 5.37473 5.47500 5.63116 6.06415 6.23067 6.47637 7.13797 7.18659 7.43408 8.03357 8.65450 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.007620 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.216115 B = 3673.492257 C = 4132.701426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.097 3.903 3 H 0.105 0.895 4 O -0.387 6.387 5 C 0.073 3.927 6 H 0.093 0.907 7 C -0.148 4.148 8 C -0.098 4.098 9 H 0.129 0.871 10 C -0.150 4.150 11 C -0.145 4.145 12 H 0.116 0.884 13 C 0.483 3.517 14 O -0.594 6.594 15 N -0.464 5.464 16 C -0.316 4.316 17 H 0.081 0.919 18 C -0.001 4.001 19 N -0.904 5.904 20 Si 0.983 3.017 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.262 1.262 24 C 0.224 3.776 25 C 0.269 3.731 26 N -0.525 5.525 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.271 0.729 37 H 0.126 0.874 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.553 4.039 4.873 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.123 0.877 4 O -0.307 6.307 5 C 0.016 3.984 6 H 0.111 0.889 7 C -0.205 4.205 8 C -0.117 4.117 9 H 0.147 0.853 10 C -0.206 4.206 11 C -0.167 4.167 12 H 0.134 0.866 13 C 0.273 3.727 14 O -0.478 6.478 15 N -0.185 5.185 16 C -0.444 4.444 17 H 0.099 0.901 18 C -0.201 4.201 19 N -0.546 5.546 20 Si 0.809 3.191 21 H -0.214 1.214 22 H -0.205 1.205 23 H -0.187 1.187 24 C 0.098 3.902 25 C -0.048 4.048 26 N -0.207 5.207 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.931 4.689 4.887 12.859 hybrid contribution -0.880 -1.256 -0.587 1.643 sum 10.051 3.432 4.300 11.458 Atomic orbital electron populations 1.21876 0.95056 1.02657 1.01595 1.22941 0.94298 0.95186 0.83636 0.87724 1.88891 1.29191 1.74009 1.38605 1.22939 0.84184 0.97268 0.94041 0.88937 1.21998 1.02120 0.96020 1.00393 1.22573 0.94664 0.99270 0.95183 0.85349 1.21992 1.02099 0.95241 1.01316 1.23161 0.96447 0.96017 1.01061 0.86584 1.20281 0.83579 0.86841 0.81988 1.90535 1.55925 1.56612 1.44710 1.43793 1.50196 1.20450 1.04032 1.19576 1.30558 0.95810 0.98466 0.90143 1.25791 0.97309 1.01458 0.95507 1.69669 1.45852 1.33472 1.05584 0.85106 0.78399 0.78768 0.76819 1.21431 1.20457 1.18692 1.19156 0.88796 0.89320 0.92947 1.29688 0.94313 0.89886 0.90888 1.80870 1.10964 1.17420 1.11450 0.91060 0.93282 0.92492 0.94196 0.88902 0.92728 0.94322 0.92488 0.89765 0.91849 0.85711 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 8.98 71.98 0.65 -4.95 16 2 C 0.10 3.04 3.67 31.28 0.11 3.15 16 3 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 4 O -0.39 -13.26 10.44 -144.33 -1.51 -14.76 16 5 C 0.07 1.90 4.05 30.96 0.13 2.03 16 6 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 7 C -0.15 -3.88 8.41 71.98 0.61 -3.27 16 8 C -0.10 -2.41 3.58 -9.81 -0.04 -2.44 16 9 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 10 C -0.15 -4.04 7.06 71.98 0.51 -3.54 16 11 C -0.15 -4.54 2.70 -10.24 -0.03 -4.57 16 12 H 0.12 3.07 5.80 -2.39 -0.01 3.05 16 13 C 0.48 20.54 3.79 87.66 0.33 20.88 16 14 O -0.59 -30.34 13.37 1.57 0.02 -30.32 16 15 N -0.46 -20.75 2.59 -645.41 -1.67 -22.42 16 16 C -0.32 -16.18 9.40 84.04 0.79 -15.39 16 17 H 0.08 4.45 7.32 -2.92 -0.02 4.43 16 18 C 0.00 -0.07 5.33 84.93 0.45 0.39 16 19 N -0.90 -44.36 8.15 21.66 0.18 -44.18 16 20 Si 0.98 41.45 29.55 68.60 2.03 43.48 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 24 C 0.22 8.48 4.93 84.57 0.42 8.90 16 25 C 0.27 11.72 13.14 89.44 1.18 12.90 16 26 N -0.52 -24.96 18.54 20.00 0.37 -24.59 16 27 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.05 2.20 5.83 -2.39 -0.01 2.19 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.34 6.55 -2.39 -0.02 1.33 16 31 H 0.09 1.82 7.02 -2.39 -0.02 1.80 16 32 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.04 1.38 4.96 -2.39 -0.01 1.36 16 34 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 35 H 0.08 1.73 7.06 -2.39 -0.02 1.72 16 36 H 0.27 13.15 8.31 -92.70 -0.77 12.37 16 37 H 0.13 3.41 5.82 -2.38 -0.01 3.39 16 38 H 0.13 5.15 6.41 -2.38 -0.02 5.14 16 Total: -1.00 -66.66 301.05 5.60 -61.06 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.08 Total: 17.66 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.10 Total: 14.07 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.13 Total: -91.19 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -1.49 Total: -45.08 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -66.66 5.60 -61.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.148 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds