Wall clock time and date at job start Thu Apr 9 2020 13:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 110.33100 * 2 1 4 4 O 1.44421 * 110.46536 * 122.31942 * 2 1 3 5 5 C 1.44427 * 105.27403 * 159.38931 * 4 2 1 6 6 H 1.09006 * 110.37156 * 78.31670 * 5 4 2 7 7 C 1.52997 * 110.37250 * 200.65755 * 5 4 2 8 8 C 1.54486 * 104.80461 * 319.48609 * 5 4 2 9 9 H 1.08996 * 110.51182 * 265.33874 * 8 5 4 10 10 C 1.52991 * 110.51033 * 142.62249 * 8 5 4 11 11 C 1.54481 * 110.36733 * 237.75315 * 2 1 3 12 12 H 1.08995 * 110.51146 * 335.72493 * 11 2 1 13 13 C 1.50706 * 110.62772 * 98.37930 * 11 2 1 14 14 O 1.21297 * 119.99663 * 25.58177 * 13 11 2 15 15 N 1.34769 * 120.00026 * 205.58119 * 13 11 2 16 16 C 1.37102 * 120.00109 * 185.02438 * 15 13 11 17 17 H 1.07998 * 119.99397 * 21.62129 * 16 15 13 18 18 C 1.38948 * 120.00097 * 201.62276 * 16 15 13 19 19 N 1.31410 * 120.00026 * 23.67495 * 18 16 15 20 20 Si 1.86795 * 119.99956 * 203.68067 * 18 16 15 21 21 H 1.48500 * 109.47367 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47390 * 119.99667 * 20 18 16 23 23 H 1.48504 * 109.47315 * 239.99912 * 20 18 16 24 24 C 1.46501 * 119.99924 * 5.02946 * 15 13 11 25 25 C 1.47201 * 109.47481 * 88.83845 * 24 15 13 26 26 N 5.09021 * 65.10697 * 250.91317 * 2 1 3 27 27 H 1.09002 * 109.46905 * 187.14708 * 1 2 3 28 28 H 1.09005 * 109.46737 * 307.14380 * 1 2 3 29 29 H 1.08998 * 109.47146 * 67.14690 * 1 2 3 30 30 H 1.09004 * 109.47296 * 175.38252 * 7 5 4 31 31 H 1.09004 * 109.47006 * 295.37924 * 7 5 4 32 32 H 1.08996 * 109.47499 * 55.37672 * 7 5 4 33 33 H 1.09007 * 109.47282 * 301.86827 * 10 8 5 34 34 H 1.08992 * 109.47422 * 61.87609 * 10 8 5 35 35 H 1.09004 * 109.46899 * 181.87489 * 10 8 5 36 36 H 0.97007 * 119.99891 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47033 * 208.83792 * 24 15 13 38 38 H 1.09000 * 109.47086 * 328.83421 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0351 -0.7234 1.1434 5 6 3.3898 -1.0847 0.7971 6 1 4.0538 -0.2289 0.9195 7 6 3.8652 -2.2566 1.6582 8 6 3.3195 -1.5027 -0.6884 9 1 3.1987 -2.5824 -0.7760 10 6 4.5716 -1.0395 -1.4355 11 6 2.0677 -0.7727 -1.2249 12 1 1.3283 -1.4915 -1.5777 13 6 2.4452 0.1800 -2.3298 14 8 2.7548 1.3227 -2.0659 15 7 2.4388 -0.2376 -3.6112 16 6 2.8803 0.5959 -4.6061 17 1 3.5402 1.4174 -4.3691 18 6 2.4788 0.3839 -5.9193 19 7 1.3659 -0.2687 -6.1689 20 14 3.5212 1.0263 -7.3300 21 1 4.7154 1.7218 -6.7864 22 1 3.9549 -0.1097 -8.1824 23 1 2.7219 1.9782 -8.1427 24 6 1.9600 -1.5823 -3.9409 25 6 0.5080 -1.5415 -4.1794 26 7 -0.6125 -1.5099 -4.3635 27 1 -0.3633 -1.0197 0.1279 28 1 -0.3633 0.6206 0.8192 29 1 -0.3633 0.3991 -0.9470 30 1 4.8563 -2.5701 1.3301 31 1 3.9095 -1.9459 2.7021 32 1 3.1686 -3.0886 1.5560 33 1 4.6671 0.0429 -1.3486 34 1 5.4504 -1.5177 -1.0032 35 1 4.4893 -1.3136 -2.4873 36 1 1.0858 -0.4170 -7.0857 37 1 2.4657 -1.9382 -4.8385 38 1 2.1732 -2.2573 -3.1120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528325480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:36 Heat of formation + Delta-G solvation = -51.021479 kcal Electronic energy + Delta-G solvation = -21594.998730 eV Core-core repulsion = 18437.968160 eV Total energy + Delta-G solvation = -3157.030569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33194 -38.08211 -35.75656 -34.26003 -33.50752 -32.47473 -31.66922 -29.16155 -27.60804 -26.91585 -24.95211 -22.99310 -21.46992 -20.74307 -18.56876 -17.93643 -16.66602 -16.26842 -15.65203 -15.45000 -15.27096 -14.59534 -14.13041 -13.73289 -13.30328 -13.10256 -12.99644 -12.65829 -12.45714 -12.14782 -12.11917 -11.86532 -11.70537 -11.63499 -11.38678 -11.37005 -11.18399 -11.06149 -10.71983 -10.58865 -10.47477 -10.37492 -10.24596 -10.15531 -9.41284 -9.28120 -8.57759 -8.05608 -6.53586 -4.05758 3.04663 3.19485 3.25100 3.48842 3.77762 4.02241 4.03828 4.13172 4.68350 4.76286 4.82382 4.94965 5.10339 5.24289 5.33499 5.40408 5.50195 5.63521 5.64141 5.66439 5.77055 5.78364 5.93737 5.98706 6.08807 6.12095 6.19285 6.22114 6.32729 6.38510 6.41287 6.49990 6.66558 7.16033 7.43560 7.87663 8.23478 8.83042 8.95750 9.15166 9.69807 10.51195 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.006941 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.104254 B = 4033.255977 C = 4491.606008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.089 0.911 4 O -0.374 6.374 5 C 0.076 3.924 6 H 0.070 0.930 7 C -0.143 4.143 8 C -0.105 4.105 9 H 0.085 0.915 10 C -0.153 4.153 11 C -0.138 4.138 12 H 0.090 0.910 13 C 0.475 3.525 14 O -0.569 6.569 15 N -0.440 5.440 16 C -0.316 4.316 17 H 0.107 0.893 18 C 0.034 3.966 19 N -0.868 5.868 20 Si 0.924 3.076 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.283 1.283 24 C 0.222 3.778 25 C 0.244 3.756 26 N -0.468 5.468 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.273 0.727 37 H 0.114 0.886 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -6.399 8.783 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.107 0.893 4 O -0.293 6.293 5 C 0.018 3.982 6 H 0.088 0.912 7 C -0.201 4.201 8 C -0.124 4.124 9 H 0.103 0.897 10 C -0.211 4.211 11 C -0.160 4.160 12 H 0.109 0.891 13 C 0.264 3.736 14 O -0.452 6.452 15 N -0.160 5.160 16 C -0.443 4.443 17 H 0.125 0.875 18 C -0.171 4.171 19 N -0.506 5.506 20 Si 0.750 3.250 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.209 1.209 24 C 0.094 3.906 25 C -0.074 4.074 26 N -0.148 5.148 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.891 -5.870 8.644 11.149 hybrid contribution 0.758 0.265 -1.218 1.459 sum 4.649 -5.606 7.426 10.401 Atomic orbital electron populations 1.21786 0.93398 1.02391 1.02502 1.22872 0.94791 0.96421 0.82950 0.89331 1.89061 1.26851 1.74907 1.38525 1.23017 0.84994 0.97094 0.93096 0.91221 1.21792 1.01108 0.97424 0.99740 1.22473 0.94916 1.00122 0.94917 0.89702 1.21965 0.95524 1.02736 1.00829 1.22789 0.98449 0.98353 0.96436 0.89129 1.19646 0.82827 0.87826 0.83311 1.90536 1.52599 1.19529 1.82537 1.43600 1.55642 1.11355 1.05434 1.19681 1.26678 1.12770 0.85139 0.87527 1.25307 0.95117 0.97495 0.99147 1.69772 1.18110 1.41351 1.21385 0.85908 0.80098 0.78571 0.80435 1.19062 1.20464 1.20891 1.18609 0.83274 0.86685 1.02025 1.29021 0.94821 0.92433 0.91122 1.80853 1.14291 1.08627 1.11048 0.92083 0.92094 0.91080 0.91269 0.92193 0.91905 0.91142 0.92832 0.91144 0.91607 0.86819 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.52 37.16 0.35 -1.94 16 2 C 0.09 1.52 3.42 -25.95 -0.09 1.43 16 3 H 0.09 1.72 6.86 -51.93 -0.36 1.37 16 4 O -0.37 -6.09 11.04 -35.23 -0.39 -6.48 16 5 C 0.08 1.06 3.48 -25.95 -0.09 0.97 16 6 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 7 C -0.14 -1.54 9.52 37.16 0.35 -1.19 16 8 C -0.11 -1.51 3.08 -89.05 -0.27 -1.78 16 9 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 10 C -0.15 -2.25 7.96 37.15 0.30 -1.96 16 11 C -0.14 -2.41 2.11 -90.20 -0.19 -2.60 16 12 H 0.09 1.52 6.04 -51.93 -0.31 1.21 16 13 C 0.48 10.27 4.63 -10.99 -0.05 10.22 16 14 O -0.57 -14.26 14.71 5.54 0.08 -14.18 16 15 N -0.44 -9.82 2.16 -117.93 -0.25 -10.08 16 16 C -0.32 -7.86 9.19 -14.93 -0.14 -8.00 16 17 H 0.11 2.81 7.52 -52.49 -0.39 2.41 16 18 C 0.03 0.82 4.80 -17.47 -0.08 0.74 16 19 N -0.87 -21.89 9.51 55.50 0.53 -21.36 16 20 Si 0.92 19.27 29.61 -169.99 -5.03 14.23 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 C 0.22 4.27 4.82 -6.83 -0.03 4.23 16 25 C 0.24 5.38 12.60 -20.76 -0.26 5.12 16 26 N -0.47 -11.17 18.54 42.15 0.78 -10.39 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.10 7.39 -51.93 -0.38 0.71 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.11 2.17 7.12 -51.93 -0.37 1.80 16 38 H 0.09 1.28 6.26 -51.93 -0.33 0.96 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -29.70 311.16 -5.22 -34.91 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.41 Total: 3.40 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.21 Total: 5.25 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.05 Total: -41.83 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.31 Total: -20.66 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.70 -5.22 -34.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.107 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds