Wall clock time and date at job start Thu Apr 9 2020 13:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 110.33100 * 2 1 4 4 O 1.44421 * 110.46536 * 122.31942 * 2 1 3 5 5 C 1.44427 * 105.27403 * 159.38931 * 4 2 1 6 6 H 1.09006 * 110.37156 * 78.31670 * 5 4 2 7 7 C 1.52997 * 110.37250 * 200.65755 * 5 4 2 8 8 C 1.54486 * 104.80461 * 319.48609 * 5 4 2 9 9 H 1.08996 * 110.51182 * 265.33874 * 8 5 4 10 10 C 1.52991 * 110.51033 * 142.62249 * 8 5 4 11 11 C 1.54481 * 110.36733 * 237.75315 * 2 1 3 12 12 H 1.08995 * 110.51146 * 335.72493 * 11 2 1 13 13 C 1.50706 * 110.62772 * 98.37930 * 11 2 1 14 14 O 1.21297 * 119.99663 * 25.58177 * 13 11 2 15 15 N 1.34769 * 120.00026 * 205.58119 * 13 11 2 16 16 C 1.37102 * 120.00109 * 185.02438 * 15 13 11 17 17 H 1.07998 * 119.99397 * 21.62129 * 16 15 13 18 18 C 1.38948 * 120.00097 * 201.62276 * 16 15 13 19 19 N 1.31410 * 120.00026 * 23.67495 * 18 16 15 20 20 Si 1.86795 * 119.99956 * 203.68067 * 18 16 15 21 21 H 1.48500 * 109.47367 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47390 * 119.99667 * 20 18 16 23 23 H 1.48504 * 109.47315 * 239.99912 * 20 18 16 24 24 C 1.46501 * 119.99924 * 5.02946 * 15 13 11 25 25 C 1.47201 * 109.47481 * 88.83845 * 24 15 13 26 26 N 5.09021 * 65.10697 * 250.91317 * 2 1 3 27 27 H 1.09002 * 109.46905 * 187.14708 * 1 2 3 28 28 H 1.09005 * 109.46737 * 307.14380 * 1 2 3 29 29 H 1.08998 * 109.47146 * 67.14690 * 1 2 3 30 30 H 1.09004 * 109.47296 * 175.38252 * 7 5 4 31 31 H 1.09004 * 109.47006 * 295.37924 * 7 5 4 32 32 H 1.08996 * 109.47499 * 55.37672 * 7 5 4 33 33 H 1.09007 * 109.47282 * 301.86827 * 10 8 5 34 34 H 1.08992 * 109.47422 * 61.87609 * 10 8 5 35 35 H 1.09004 * 109.46899 * 181.87489 * 10 8 5 36 36 H 0.97007 * 119.99891 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47033 * 208.83792 * 24 15 13 38 38 H 1.09000 * 109.47086 * 328.83421 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0351 -0.7234 1.1434 5 6 3.3898 -1.0847 0.7971 6 1 4.0538 -0.2289 0.9195 7 6 3.8652 -2.2566 1.6582 8 6 3.3195 -1.5027 -0.6884 9 1 3.1987 -2.5824 -0.7760 10 6 4.5716 -1.0395 -1.4355 11 6 2.0677 -0.7727 -1.2249 12 1 1.3283 -1.4915 -1.5777 13 6 2.4452 0.1800 -2.3298 14 8 2.7548 1.3227 -2.0659 15 7 2.4388 -0.2376 -3.6112 16 6 2.8803 0.5959 -4.6061 17 1 3.5402 1.4174 -4.3691 18 6 2.4788 0.3839 -5.9193 19 7 1.3659 -0.2687 -6.1689 20 14 3.5212 1.0263 -7.3300 21 1 4.7154 1.7218 -6.7864 22 1 3.9549 -0.1097 -8.1824 23 1 2.7219 1.9782 -8.1427 24 6 1.9600 -1.5823 -3.9409 25 6 0.5080 -1.5415 -4.1794 26 7 -0.6125 -1.5099 -4.3635 27 1 -0.3633 -1.0197 0.1279 28 1 -0.3633 0.6206 0.8192 29 1 -0.3633 0.3991 -0.9470 30 1 4.8563 -2.5701 1.3301 31 1 3.9095 -1.9459 2.7021 32 1 3.1686 -3.0886 1.5560 33 1 4.6671 0.0429 -1.3486 34 1 5.4504 -1.5177 -1.0032 35 1 4.4893 -1.3136 -2.4873 36 1 1.0858 -0.4170 -7.0857 37 1 2.4657 -1.9382 -4.8385 38 1 2.1732 -2.2573 -3.1120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528325480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:34 Heat of formation + Delta-G solvation = -69.122198 kcal Electronic energy + Delta-G solvation = -21595.783636 eV Core-core repulsion = 18437.968160 eV Total energy + Delta-G solvation = -3157.815476 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77406 -39.62085 -37.53811 -36.07419 -34.77752 -33.93496 -33.31652 -30.22822 -29.26804 -28.33217 -26.65366 -24.18235 -22.91876 -21.97906 -20.12562 -19.73203 -18.26141 -17.94289 -17.02071 -16.82228 -16.60167 -16.27069 -15.74174 -15.19079 -14.75309 -14.61932 -14.38835 -14.07566 -13.83980 -13.72451 -13.36086 -13.22644 -13.11081 -13.04671 -12.91822 -12.80126 -12.61348 -12.42618 -12.34889 -12.17660 -12.05193 -11.89789 -11.51624 -11.39614 -11.08760 -10.70997 -10.32526 -9.90304 -8.40986 -5.98821 1.36408 1.47565 1.59773 1.79580 2.08556 2.30133 2.37890 2.78522 2.98827 3.12039 3.52292 3.61019 3.71466 3.84566 3.96493 4.18155 4.29518 4.35696 4.45528 4.52921 4.54342 4.62685 4.65097 4.72499 4.78117 4.95699 5.04422 5.07399 5.14753 5.15293 5.20968 5.40582 5.46013 5.48637 5.91265 6.05713 6.38936 7.09155 7.12567 7.34420 7.92383 8.61765 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.006941 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.104254 B = 4033.255977 C = 4491.606008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.058 0.942 4 O -0.377 6.377 5 C 0.069 3.931 6 H 0.058 0.942 7 C -0.137 4.137 8 C -0.099 4.099 9 H 0.121 0.879 10 C -0.148 4.148 11 C -0.135 4.135 12 H 0.102 0.898 13 C 0.476 3.524 14 O -0.612 6.612 15 N -0.450 5.450 16 C -0.337 4.337 17 H 0.082 0.918 18 C 0.006 3.994 19 N -0.889 5.889 20 Si 0.983 3.017 21 H -0.268 1.268 22 H -0.263 1.263 23 H -0.292 1.292 24 C 0.222 3.778 25 C 0.255 3.745 26 N -0.505 5.505 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.273 0.727 37 H 0.118 0.882 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -8.636 9.469 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.076 0.924 4 O -0.297 6.297 5 C 0.012 3.988 6 H 0.076 0.924 7 C -0.194 4.194 8 C -0.118 4.118 9 H 0.139 0.861 10 C -0.205 4.205 11 C -0.157 4.157 12 H 0.121 0.879 13 C 0.266 3.734 14 O -0.498 6.498 15 N -0.170 5.170 16 C -0.464 4.464 17 H 0.099 0.901 18 C -0.196 4.196 19 N -0.527 5.527 20 Si 0.808 3.192 21 H -0.193 1.193 22 H -0.188 1.188 23 H -0.219 1.219 24 C 0.096 3.904 25 C -0.063 4.063 26 N -0.186 5.186 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.859 -8.134 9.337 13.302 hybrid contribution 0.478 1.035 -1.371 1.784 sum 5.337 -7.098 7.966 11.930 Atomic orbital electron populations 1.21737 0.92468 1.03526 1.01915 1.22717 0.95565 0.95172 0.83602 0.92358 1.89061 1.28109 1.74528 1.37968 1.23233 0.83765 0.98196 0.93620 0.92388 1.21798 1.02373 0.95909 0.99286 1.22584 0.92877 1.01631 0.94690 0.86085 1.21898 0.97323 1.00630 1.00685 1.22797 1.00412 0.97718 0.94780 0.87943 1.20358 0.81142 0.87899 0.83959 1.90510 1.54142 1.21782 1.83327 1.43727 1.55675 1.12321 1.05251 1.19573 1.27132 1.13279 0.86405 0.90058 1.25910 0.95638 0.97540 1.00554 1.69854 1.18906 1.42283 1.21645 0.85025 0.78337 0.78181 0.77661 1.19262 1.18762 1.21901 1.18956 0.81432 0.85867 1.04186 1.29566 0.95348 0.91332 0.90005 1.80851 1.15571 1.09763 1.12409 0.90480 0.90793 0.93131 0.88942 0.91763 0.91063 0.94766 0.89441 0.92041 0.91700 0.86438 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.52 71.99 0.69 -3.67 16 2 C 0.09 3.01 3.42 31.10 0.11 3.12 16 3 H 0.06 2.36 6.86 -2.39 -0.02 2.34 16 4 O -0.38 -11.62 11.04 -148.98 -1.64 -13.27 16 5 C 0.07 1.77 3.48 31.10 0.11 1.88 16 6 H 0.06 1.61 7.87 -2.38 -0.02 1.59 16 7 C -0.14 -2.39 9.52 71.98 0.68 -1.71 16 8 C -0.10 -2.56 3.08 -9.78 -0.03 -2.59 16 9 H 0.12 2.34 7.87 -2.39 -0.02 2.32 16 10 C -0.15 -4.09 7.96 71.98 0.57 -3.51 16 11 C -0.14 -4.53 2.11 -10.52 -0.02 -4.55 16 12 H 0.10 3.19 6.04 -2.39 -0.01 3.17 16 13 C 0.48 20.76 4.63 87.66 0.41 21.17 16 14 O -0.61 -31.94 14.71 -3.08 -0.05 -31.99 16 15 N -0.45 -20.07 2.16 -645.41 -1.39 -21.46 16 16 C -0.34 -17.03 9.19 84.04 0.77 -16.26 16 17 H 0.08 4.46 7.52 -2.91 -0.02 4.44 16 18 C 0.01 0.30 4.80 84.93 0.41 0.70 16 19 N -0.89 -44.58 9.51 21.66 0.21 -44.37 16 20 Si 0.98 39.52 29.61 68.60 2.03 41.55 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.22 8.20 4.82 84.57 0.41 8.61 16 25 C 0.26 11.01 12.60 89.44 1.13 12.14 16 26 N -0.50 -23.91 18.54 20.01 0.37 -23.54 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.03 1.19 6.91 -2.38 -0.02 1.17 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.80 7.39 -2.38 -0.02 1.78 16 36 H 0.27 13.29 8.31 -92.70 -0.77 12.52 16 37 H 0.12 4.30 7.12 -2.39 -0.02 4.28 16 38 H 0.13 3.58 6.26 -2.39 -0.01 3.56 16 Total: -1.00 -65.95 311.16 5.81 -60.14 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.06 Total: 17.61 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.23 Total: 15.33 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -0.82 Total: -89.38 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.69 Total: -45.25 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -65.95 5.81 -60.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.986 kcal (2) G-P(sol) polarization free energy of solvation -65.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds