Wall clock time and date at job start Thu Apr 9 2020 13:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.33308 * 2 1 4 4 O 1.44422 * 110.37182 * 122.37384 * 2 1 3 5 5 C 1.44426 * 105.27689 * 159.34146 * 4 2 1 6 6 H 1.08994 * 110.37060 * 78.42555 * 5 4 2 7 7 C 1.53004 * 110.37030 * 200.65566 * 5 4 2 8 8 C 1.54479 * 104.79983 * 319.48627 * 5 4 2 9 9 H 1.09004 * 110.51111 * 265.32956 * 8 5 4 10 10 C 1.53003 * 110.50917 * 142.62661 * 8 5 4 11 11 C 1.54482 * 110.36950 * 237.74900 * 2 1 3 12 12 H 1.09002 * 110.51128 * 98.41179 * 11 2 1 13 13 C 1.50702 * 110.51320 * 335.83645 * 11 2 1 14 14 O 1.21292 * 120.00210 * 282.73182 * 13 11 2 15 15 N 1.34776 * 119.99809 * 102.45661 * 13 11 2 16 16 C 1.37100 * 119.99860 * 175.44083 * 15 13 11 17 17 H 1.07999 * 120.00173 * 20.88438 * 16 15 13 18 18 C 1.38948 * 119.99774 * 200.87983 * 16 15 13 19 19 N 1.31413 * 120.00386 * 23.27221 * 18 16 15 20 20 Si 1.86804 * 120.00076 * 203.26430 * 18 16 15 21 21 H 1.48500 * 109.46888 * 60.00306 * 20 18 16 22 22 H 1.48493 * 109.47290 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47029 * 300.00462 * 20 18 16 24 24 C 1.46506 * 119.99999 * 355.44296 * 15 13 11 25 25 C 1.47198 * 109.47278 * 89.06879 * 24 15 13 26 26 N 5.32204 * 98.52940 * 266.92511 * 2 1 3 27 27 H 1.08994 * 109.47356 * 186.84369 * 1 2 3 28 28 H 1.09004 * 109.46738 * 306.85030 * 1 2 3 29 29 H 1.08999 * 109.46896 * 66.84236 * 1 2 3 30 30 H 1.08995 * 109.47468 * 58.54729 * 7 5 4 31 31 H 1.09000 * 109.46836 * 178.54394 * 7 5 4 32 32 H 1.08995 * 109.47087 * 298.54265 * 7 5 4 33 33 H 1.08998 * 109.46822 * 305.35322 * 10 8 5 34 34 H 1.08997 * 109.47125 * 65.35505 * 10 8 5 35 35 H 1.09002 * 109.46803 * 185.35568 * 10 8 5 36 36 H 0.96995 * 120.00391 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.46838 * 209.06481 * 24 15 13 38 38 H 1.08994 * 109.46840 * 329.06853 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7249 1.1435 5 6 3.3874 -1.0881 0.7983 6 1 4.0528 -0.2340 0.9237 7 6 3.8600 -2.2613 1.6592 8 6 3.3177 -1.5050 -0.6875 9 1 3.1955 -2.5846 -0.7760 10 6 4.5714 -1.0433 -1.4332 11 6 2.0677 -0.7728 -1.2248 12 1 2.3407 -0.0820 -2.0226 13 6 1.0443 -1.7648 -1.7142 14 8 0.8807 -2.8101 -1.1211 15 7 0.3068 -1.4881 -2.8079 16 6 -0.5570 -2.4279 -3.3080 17 1 -0.9060 -3.2312 -2.6760 18 6 -0.9835 -2.3470 -4.6279 19 7 -0.2608 -1.6986 -5.5134 20 14 -2.5843 -3.1600 -5.1438 21 1 -3.7080 -2.5773 -4.3673 22 1 -2.8117 -2.9299 -6.5930 23 1 -2.5053 -4.6194 -4.8811 24 6 0.4284 -0.1829 -3.4623 25 6 1.4956 -0.2390 -4.4745 26 7 2.3194 -0.2823 -5.2556 27 1 -0.3634 -1.0203 0.1224 28 1 -0.3633 0.6164 0.8224 29 1 -0.3633 0.4041 -0.9449 30 1 3.1937 -3.1113 1.5125 31 1 4.8732 -2.5397 1.3692 32 1 3.8501 -1.9687 2.7091 33 1 4.7025 0.0297 -1.2938 34 1 5.4417 -1.5697 -1.0414 35 1 4.4630 -1.2611 -2.4957 36 1 -0.5583 -1.6424 -6.4349 37 1 -0.5159 0.0714 -3.9437 38 1 0.6727 0.5752 -2.7183 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528325843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:39 Heat of formation + Delta-G solvation = -49.348969 kcal Electronic energy + Delta-G solvation = -21644.847479 eV Core-core repulsion = 18487.889435 eV Total energy + Delta-G solvation = -3156.958044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29100 -38.02013 -35.70955 -34.23537 -33.44806 -32.62758 -31.55837 -29.10655 -27.55670 -27.02679 -24.85165 -22.91745 -21.75455 -20.40721 -18.63861 -17.90055 -16.74571 -16.28402 -15.77591 -15.50410 -15.03888 -14.51671 -14.07925 -13.54594 -13.32587 -13.10026 -13.00426 -12.62038 -12.48607 -12.24305 -12.08611 -11.79513 -11.74509 -11.51808 -11.37416 -11.32623 -11.14143 -10.99342 -10.60825 -10.53979 -10.42444 -10.38238 -10.32381 -10.24293 -9.43260 -9.23145 -8.52241 -8.01109 -6.50373 -4.01704 3.11064 3.21417 3.23809 3.53314 3.78187 4.00808 4.09584 4.14812 4.66979 4.78732 4.85933 5.03518 5.13734 5.22568 5.27018 5.40129 5.52861 5.59404 5.60952 5.67965 5.76798 5.83672 5.87863 5.97161 6.08886 6.10528 6.20494 6.26672 6.33567 6.36768 6.37908 6.58529 6.65364 7.20858 7.47257 7.92283 8.28136 8.83143 9.00336 9.19396 9.75063 10.54703 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.007015 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.054606 B = 3990.643623 C = 4418.175550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.090 3.910 3 H 0.069 0.931 4 O -0.362 6.362 5 C 0.079 3.921 6 H 0.064 0.936 7 C -0.145 4.145 8 C -0.106 4.106 9 H 0.098 0.902 10 C -0.143 4.143 11 C -0.140 4.140 12 H 0.090 0.910 13 C 0.478 3.522 14 O -0.562 6.562 15 N -0.444 5.444 16 C -0.317 4.317 17 H 0.107 0.893 18 C 0.034 3.966 19 N -0.872 5.872 20 Si 0.925 3.075 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.222 3.778 25 C 0.246 3.754 26 N -0.470 5.470 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.274 0.726 37 H 0.115 0.885 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 6.440 8.549 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.087 0.913 4 O -0.281 6.281 5 C 0.021 3.979 6 H 0.081 0.919 7 C -0.202 4.202 8 C -0.125 4.125 9 H 0.116 0.884 10 C -0.200 4.200 11 C -0.162 4.162 12 H 0.108 0.892 13 C 0.266 3.734 14 O -0.443 6.443 15 N -0.165 5.165 16 C -0.444 4.444 17 H 0.125 0.875 18 C -0.170 4.170 19 N -0.510 5.510 20 Si 0.751 3.249 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.198 1.198 24 C 0.094 3.906 25 C -0.073 4.073 26 N -0.151 5.151 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.553 5.816 7.677 10.653 hybrid contribution -0.962 -0.277 -0.648 1.192 sum 3.591 5.539 7.029 9.643 Atomic orbital electron populations 1.21962 0.92848 1.04272 1.02145 1.22792 0.95714 0.94132 0.84172 0.91323 1.89135 1.26886 1.74413 1.37694 1.22969 0.84692 0.96670 0.93558 0.91855 1.21778 1.01047 0.97993 0.99353 1.22497 0.93305 1.02505 0.94169 0.88405 1.21821 0.96629 1.00746 1.00794 1.22874 0.96238 0.98158 0.98903 0.89152 1.19687 0.82682 0.87479 0.83515 1.90547 1.68864 1.27109 1.57811 1.43608 1.36873 1.11883 1.24131 1.19610 1.20608 1.08837 0.95328 0.87514 1.25274 0.99110 0.97750 0.94900 1.69734 1.35245 1.42841 1.03229 0.86010 0.81881 0.79798 0.77197 1.19682 1.21089 1.19824 1.18667 0.94887 0.87112 0.89890 1.29056 0.92548 0.92095 0.93571 1.80854 1.14691 1.09107 1.10407 0.90370 0.92250 0.90797 0.91262 0.91582 0.92316 0.92701 0.92419 0.92090 0.91545 0.86684 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.57 37.16 0.32 -2.09 16 2 C 0.09 1.41 3.83 -25.95 -0.10 1.31 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 O -0.36 -6.19 11.04 -35.23 -0.39 -6.58 16 5 C 0.08 1.16 3.47 -25.95 -0.09 1.07 16 6 H 0.06 0.80 7.83 -51.93 -0.41 0.39 16 7 C -0.14 -1.89 9.52 37.16 0.35 -1.54 16 8 C -0.11 -1.74 2.76 -89.05 -0.25 -1.98 16 9 H 0.10 1.88 6.83 -51.93 -0.35 1.53 16 10 C -0.14 -1.98 8.97 37.16 0.33 -1.65 16 11 C -0.14 -2.45 2.23 -90.20 -0.20 -2.66 16 12 H 0.09 1.49 5.44 -51.93 -0.28 1.21 16 13 C 0.48 10.61 4.55 -10.98 -0.05 10.56 16 14 O -0.56 -14.52 15.36 5.55 0.09 -14.44 16 15 N -0.44 -10.09 2.54 -117.93 -0.30 -10.39 16 16 C -0.32 -8.05 9.26 -14.93 -0.14 -8.19 16 17 H 0.11 2.88 7.42 -52.49 -0.39 2.49 16 18 C 0.03 0.83 4.81 -17.47 -0.08 0.74 16 19 N -0.87 -22.05 9.44 55.50 0.52 -21.52 16 20 Si 0.92 19.58 29.61 -169.99 -5.03 14.55 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C 0.22 4.29 4.36 -6.83 -0.03 4.26 16 25 C 0.25 5.36 12.25 -20.76 -0.25 5.10 16 26 N -0.47 -11.08 18.54 42.16 0.78 -10.30 16 27 H 0.08 1.48 7.02 -51.93 -0.36 1.11 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 30 H 0.07 1.04 8.12 -51.93 -0.42 0.61 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.12 2.22 7.07 -51.93 -0.37 1.85 16 38 H 0.08 1.25 5.54 -51.93 -0.29 0.96 16 LS Contribution 309.37 15.07 4.66 4.66 Total: -1.00 -30.52 309.37 -5.16 -35.68 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.30 Total: 3.40 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.19 Total: 4.94 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 1.01 Total: -42.21 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.30 Total: -21.01 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.52 -5.16 -35.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.673 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds