Wall clock time and date at job start Thu Apr 9 2020 13:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.33308 * 2 1 4 4 O 1.44422 * 110.37182 * 122.37384 * 2 1 3 5 5 C 1.44426 * 105.27689 * 159.34146 * 4 2 1 6 6 H 1.08994 * 110.37060 * 78.42555 * 5 4 2 7 7 C 1.53004 * 110.37030 * 200.65566 * 5 4 2 8 8 C 1.54479 * 104.79983 * 319.48627 * 5 4 2 9 9 H 1.09004 * 110.51111 * 265.32956 * 8 5 4 10 10 C 1.53003 * 110.50917 * 142.62661 * 8 5 4 11 11 C 1.54482 * 110.36950 * 237.74900 * 2 1 3 12 12 H 1.09002 * 110.51128 * 98.41179 * 11 2 1 13 13 C 1.50702 * 110.51320 * 335.83645 * 11 2 1 14 14 O 1.21292 * 120.00210 * 282.73182 * 13 11 2 15 15 N 1.34776 * 119.99809 * 102.45661 * 13 11 2 16 16 C 1.37100 * 119.99860 * 175.44083 * 15 13 11 17 17 H 1.07999 * 120.00173 * 20.88438 * 16 15 13 18 18 C 1.38948 * 119.99774 * 200.87983 * 16 15 13 19 19 N 1.31413 * 120.00386 * 23.27221 * 18 16 15 20 20 Si 1.86804 * 120.00076 * 203.26430 * 18 16 15 21 21 H 1.48500 * 109.46888 * 60.00306 * 20 18 16 22 22 H 1.48493 * 109.47290 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47029 * 300.00462 * 20 18 16 24 24 C 1.46506 * 119.99999 * 355.44296 * 15 13 11 25 25 C 1.47198 * 109.47278 * 89.06879 * 24 15 13 26 26 N 5.32204 * 98.52940 * 266.92511 * 2 1 3 27 27 H 1.08994 * 109.47356 * 186.84369 * 1 2 3 28 28 H 1.09004 * 109.46738 * 306.85030 * 1 2 3 29 29 H 1.08999 * 109.46896 * 66.84236 * 1 2 3 30 30 H 1.08995 * 109.47468 * 58.54729 * 7 5 4 31 31 H 1.09000 * 109.46836 * 178.54394 * 7 5 4 32 32 H 1.08995 * 109.47087 * 298.54265 * 7 5 4 33 33 H 1.08998 * 109.46822 * 305.35322 * 10 8 5 34 34 H 1.08997 * 109.47125 * 65.35505 * 10 8 5 35 35 H 1.09002 * 109.46803 * 185.35568 * 10 8 5 36 36 H 0.96995 * 120.00391 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.46838 * 209.06481 * 24 15 13 38 38 H 1.08994 * 109.46840 * 329.06853 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7249 1.1435 5 6 3.3874 -1.0881 0.7983 6 1 4.0528 -0.2340 0.9237 7 6 3.8600 -2.2613 1.6592 8 6 3.3177 -1.5050 -0.6875 9 1 3.1955 -2.5846 -0.7760 10 6 4.5714 -1.0433 -1.4332 11 6 2.0677 -0.7728 -1.2248 12 1 2.3407 -0.0820 -2.0226 13 6 1.0443 -1.7648 -1.7142 14 8 0.8807 -2.8101 -1.1211 15 7 0.3068 -1.4881 -2.8079 16 6 -0.5570 -2.4279 -3.3080 17 1 -0.9060 -3.2312 -2.6760 18 6 -0.9835 -2.3470 -4.6279 19 7 -0.2608 -1.6986 -5.5134 20 14 -2.5843 -3.1600 -5.1438 21 1 -3.7080 -2.5773 -4.3673 22 1 -2.8117 -2.9299 -6.5930 23 1 -2.5053 -4.6194 -4.8811 24 6 0.4284 -0.1829 -3.4623 25 6 1.4956 -0.2390 -4.4745 26 7 2.3194 -0.2823 -5.2556 27 1 -0.3634 -1.0203 0.1224 28 1 -0.3633 0.6164 0.8224 29 1 -0.3633 0.4041 -0.9449 30 1 3.1937 -3.1113 1.5125 31 1 4.8732 -2.5397 1.3692 32 1 3.8501 -1.9687 2.7091 33 1 4.7025 0.0297 -1.2938 34 1 5.4417 -1.5697 -1.0414 35 1 4.4630 -1.2611 -2.4957 36 1 -0.5583 -1.6424 -6.4349 37 1 -0.5159 0.0714 -3.9437 38 1 0.6727 0.5752 -2.7183 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528325843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:39 Heat of formation + Delta-G solvation = -68.918244 kcal Electronic energy + Delta-G solvation = -21645.696066 eV Core-core repulsion = 18487.889435 eV Total energy + Delta-G solvation = -3157.806631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.72572 -39.57216 -37.50598 -36.05080 -34.67172 -34.17505 -33.18844 -30.23565 -29.23217 -28.41873 -26.57366 -24.12383 -23.14778 -21.67952 -20.20951 -19.71305 -18.33183 -17.97200 -17.08256 -16.81278 -16.60383 -16.16181 -15.63197 -15.06177 -14.80534 -14.66702 -14.30419 -14.03389 -13.84590 -13.72052 -13.47324 -13.26776 -13.14554 -13.04194 -12.87689 -12.70944 -12.63403 -12.33863 -12.33225 -12.13795 -12.10170 -11.84949 -11.54761 -11.49688 -11.08995 -10.65317 -10.28050 -9.88593 -8.41107 -5.98189 1.38764 1.46378 1.55180 1.83134 2.08174 2.29284 2.38211 2.88598 2.99766 3.07278 3.50395 3.59460 3.79993 3.91101 3.93936 4.19492 4.35057 4.41891 4.42475 4.48882 4.52498 4.57427 4.63492 4.71979 4.78921 4.93699 5.00416 5.03924 5.10461 5.18065 5.30242 5.33549 5.41140 5.47917 6.01116 6.08496 6.40899 7.09981 7.13801 7.35835 7.95400 8.61371 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.007015 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.054606 B = 3990.643623 C = 4418.175550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 H 0.115 0.885 4 O -0.386 6.386 5 C 0.079 3.921 6 H 0.100 0.900 7 C -0.144 4.144 8 C -0.109 4.109 9 H 0.057 0.943 10 C -0.135 4.135 11 C -0.138 4.138 12 H 0.106 0.894 13 C 0.475 3.525 14 O -0.610 6.610 15 N -0.455 5.455 16 C -0.342 4.342 17 H 0.078 0.922 18 C 0.008 3.992 19 N -0.888 5.888 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.280 1.280 23 H -0.284 1.284 24 C 0.222 3.778 25 C 0.257 3.743 26 N -0.503 5.503 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 8.779 9.242 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.132 0.868 4 O -0.306 6.306 5 C 0.022 3.978 6 H 0.117 0.883 7 C -0.201 4.201 8 C -0.128 4.128 9 H 0.075 0.925 10 C -0.192 4.192 11 C -0.160 4.160 12 H 0.124 0.876 13 C 0.265 3.735 14 O -0.495 6.495 15 N -0.175 5.175 16 C -0.469 4.469 17 H 0.096 0.904 18 C -0.194 4.194 19 N -0.526 5.526 20 Si 0.807 3.193 21 H -0.183 1.183 22 H -0.205 1.205 23 H -0.210 1.210 24 C 0.095 3.905 25 C -0.061 4.061 26 N -0.185 5.185 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.213 8.181 8.364 12.809 hybrid contribution -1.151 -1.074 -0.834 1.782 sum 4.062 7.106 7.530 11.122 Atomic orbital electron populations 1.21958 0.93272 1.02059 1.03793 1.23021 0.95546 0.95599 0.82507 0.86761 1.89121 1.28294 1.74959 1.38208 1.23177 0.84346 0.98242 0.92034 0.88270 1.21805 1.01513 0.96514 1.00244 1.22510 0.94015 1.00069 0.96254 0.92464 1.21778 0.95962 1.02707 0.98786 1.22929 0.95254 0.97470 1.00352 0.87589 1.20533 0.82605 0.87717 0.82604 1.90513 1.70243 1.29524 1.59173 1.43743 1.36684 1.12704 1.24361 1.19479 1.22278 1.09577 0.95601 0.90396 1.25853 1.01121 0.98088 0.94358 1.69817 1.35991 1.43606 1.03225 0.85155 0.78980 0.78169 0.77022 1.18346 1.20524 1.21029 1.19016 0.94390 0.86589 0.90483 1.29514 0.92256 0.91071 0.93255 1.80853 1.15952 1.10145 1.11523 0.94761 0.89710 0.89732 0.94398 0.89291 0.90782 0.89935 0.90401 0.94589 0.91634 0.86495 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 8.57 71.98 0.62 -3.90 16 2 C 0.09 2.59 3.83 31.10 0.12 2.71 16 3 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 4 O -0.39 -12.42 11.04 -148.98 -1.64 -14.07 16 5 C 0.08 2.12 3.47 31.10 0.11 2.23 16 6 H 0.10 2.01 7.83 -2.39 -0.02 1.99 16 7 C -0.14 -3.56 9.52 71.98 0.69 -2.88 16 8 C -0.11 -3.46 2.76 -9.78 -0.03 -3.49 16 9 H 0.06 2.28 6.83 -2.39 -0.02 2.26 16 10 C -0.14 -3.42 8.97 71.98 0.65 -2.78 16 11 C -0.14 -4.65 2.23 -10.52 -0.02 -4.68 16 12 H 0.11 3.20 5.44 -2.39 -0.01 3.18 16 13 C 0.48 21.45 4.55 87.66 0.40 21.85 16 14 O -0.61 -33.21 15.36 -3.07 -0.05 -33.25 16 15 N -0.46 -20.83 2.54 -645.41 -1.64 -22.47 16 16 C -0.34 -17.84 9.26 84.04 0.78 -17.06 16 17 H 0.08 4.44 7.42 -2.91 -0.02 4.42 16 18 C 0.01 0.41 4.81 84.93 0.41 0.82 16 19 N -0.89 -44.75 9.44 21.66 0.20 -44.55 16 20 Si 0.98 40.37 29.61 68.60 2.03 42.41 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.22 8.26 4.36 84.57 0.37 8.62 16 25 C 0.26 10.94 12.25 89.44 1.10 12.03 16 26 N -0.50 -23.41 18.54 20.01 0.37 -23.04 16 27 H 0.03 1.30 7.02 -2.39 -0.02 1.28 16 28 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.08 2.24 6.43 -2.39 -0.02 2.22 16 30 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 37 H 0.12 4.35 7.07 -2.39 -0.02 4.33 16 38 H 0.13 3.56 5.54 -2.39 -0.01 3.55 16 Total: -1.00 -69.41 309.37 5.51 -63.89 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.06 Total: 17.61 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.17 Total: 13.48 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -1.07 Total: -90.06 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -1.69 Total: -47.32 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.41 kcal Total: -69.41 5.51 -63.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.024 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds