Wall clock time and date at job start Thu Apr 9 2020 13:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.42254 * 2 1 4 4 O 1.44653 * 110.50820 * 122.36331 * 2 1 3 5 5 C 1.44428 * 105.36615 * 159.18254 * 4 2 1 6 6 H 1.09002 * 110.36795 * 78.40317 * 5 4 2 7 7 C 1.53002 * 110.36658 * 200.73192 * 5 4 2 8 8 C 1.54472 * 104.80416 * 319.56530 * 5 4 2 9 9 H 1.09004 * 110.50994 * 142.62566 * 8 5 4 10 10 C 1.53000 * 110.62776 * 265.27713 * 8 5 4 11 11 C 1.54480 * 110.37362 * 237.69077 * 2 1 3 12 12 H 1.09001 * 110.50733 * 335.97682 * 11 2 1 13 13 C 1.50700 * 110.51053 * 98.54226 * 11 2 1 14 14 O 1.21294 * 119.99490 * 80.64160 * 13 11 2 15 15 N 1.34769 * 120.00378 * 260.63729 * 13 11 2 16 16 C 1.37095 * 120.00287 * 183.34244 * 15 13 11 17 17 H 1.08004 * 119.99846 * 28.66112 * 16 15 13 18 18 C 1.38953 * 120.00391 * 208.66979 * 16 15 13 19 19 N 1.31408 * 119.99908 * 39.91751 * 18 16 15 20 20 Si 1.86804 * 119.99886 * 219.92551 * 18 16 15 21 21 H 1.48505 * 109.46672 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.46773 * 299.99040 * 20 18 16 23 23 H 1.48497 * 109.47266 * 59.99580 * 20 18 16 24 24 C 1.46500 * 120.00055 * 3.34021 * 15 13 11 25 25 C 1.47207 * 109.46998 * 268.75447 * 24 15 13 26 26 N 5.36344 * 78.27534 * 241.07824 * 2 1 3 27 27 H 1.08997 * 109.47275 * 186.15975 * 1 2 3 28 28 H 1.09008 * 109.47005 * 306.16106 * 1 2 3 29 29 H 1.09003 * 109.46982 * 66.16092 * 1 2 3 30 30 H 1.09003 * 109.46624 * 175.38238 * 7 5 4 31 31 H 1.08996 * 109.47069 * 295.38183 * 7 5 4 32 32 H 1.08995 * 109.47284 * 55.38642 * 7 5 4 33 33 H 1.09000 * 109.47154 * 174.71525 * 10 8 5 34 34 H 1.09005 * 109.47450 * 294.71289 * 10 8 5 35 35 H 1.08996 * 109.47286 * 54.71454 * 10 8 5 36 36 H 0.97001 * 119.99944 * 6.10733 * 19 18 16 37 37 H 1.09003 * 109.47396 * 28.75317 * 24 15 13 38 38 H 1.09002 * 109.47321 * 148.75610 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7252 1.1444 5 6 3.3901 -1.0911 0.7970 6 1 4.0570 -0.2376 0.9192 7 6 3.8620 -2.2648 1.6576 8 6 3.3172 -1.5084 -0.6884 9 1 4.2101 -1.1814 -1.2213 10 6 3.1439 -3.0233 -0.8148 11 6 2.0678 -0.7740 -1.2240 12 1 1.3266 -1.4902 -1.5787 13 6 2.4482 0.1801 -2.3267 14 8 3.5147 0.7565 -2.2887 15 7 1.6034 0.3929 -3.3549 16 6 1.9775 1.2076 -4.3922 17 1 3.0212 1.3069 -4.6514 18 6 1.0139 1.9057 -5.1098 19 7 -0.0045 2.4514 -4.4837 20 14 1.1662 2.0684 -6.9645 21 1 0.0192 2.8528 -7.4883 22 1 2.4353 2.7636 -7.2978 23 1 1.1647 0.7177 -7.5816 24 6 0.2852 -0.2463 -3.3644 25 6 0.3727 -1.5408 -4.0599 26 7 0.4401 -2.5397 -4.5966 27 1 -0.3634 -1.0217 0.1103 28 1 -0.3633 0.6064 0.8298 29 1 -0.3633 0.4154 -0.9400 30 1 4.8517 -2.5815 1.3287 31 1 3.9080 -1.9545 2.7015 32 1 3.1625 -3.0944 1.5557 33 1 3.0008 -3.2865 -1.8628 34 1 4.0336 -3.5240 -0.4328 35 1 2.2740 -3.3388 -0.2389 36 1 -0.0384 2.4438 -3.5144 37 1 -0.0483 -0.4066 -2.3390 38 1 -0.4268 0.3967 -3.8817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528325847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:44 Heat of formation + Delta-G solvation = -49.909775 kcal Electronic energy + Delta-G solvation = -21493.663134 eV Core-core repulsion = 18336.680771 eV Total energy + Delta-G solvation = -3156.982362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38062 -38.29298 -36.21760 -34.86026 -33.69859 -32.80057 -31.65422 -28.98699 -27.68643 -27.32160 -24.81742 -23.37883 -21.63794 -19.97118 -19.15366 -18.30310 -17.41625 -16.60979 -15.88032 -15.31607 -15.08671 -14.67711 -14.10266 -13.88803 -13.65442 -13.58158 -13.40718 -12.83533 -12.48613 -12.44586 -12.31766 -12.11158 -12.01108 -11.74496 -11.71581 -11.54971 -11.41698 -11.12006 -10.83887 -10.53906 -10.40922 -10.33680 -10.29966 -10.22081 -9.50095 -9.15532 -8.63409 -8.16104 -6.93562 -4.10944 3.03514 3.15403 3.23720 3.31120 3.48329 3.51043 3.89867 4.09619 4.39589 4.56132 4.71440 4.74709 4.99045 5.10163 5.15621 5.29946 5.34239 5.42581 5.46279 5.53790 5.57598 5.66386 5.72853 5.82973 5.93319 5.99211 6.03835 6.09277 6.09760 6.20465 6.27841 6.32590 6.43379 7.05447 7.61306 7.95121 8.00874 8.31269 8.68348 9.10227 9.57679 10.30662 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.006483 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.681611 B = 4317.711110 C = 4448.895019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 H 0.076 0.924 4 O -0.370 6.370 5 C 0.078 3.922 6 H 0.070 0.930 7 C -0.145 4.145 8 C -0.107 4.107 9 H 0.096 0.904 10 C -0.141 4.141 11 C -0.137 4.137 12 H 0.089 0.911 13 C 0.465 3.535 14 O -0.559 6.559 15 N -0.439 5.439 16 C -0.424 4.424 17 H 0.094 0.906 18 C 0.024 3.976 19 N -0.845 5.845 20 Si 1.053 2.947 21 H -0.277 1.277 22 H -0.279 1.279 23 H -0.283 1.283 24 C 0.171 3.829 25 C 0.207 3.793 26 N -0.447 5.447 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.279 0.721 37 H 0.108 0.892 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -5.831 8.936 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.094 0.906 4 O -0.290 6.290 5 C 0.020 3.980 6 H 0.088 0.912 7 C -0.202 4.202 8 C -0.126 4.126 9 H 0.115 0.885 10 C -0.198 4.198 11 C -0.159 4.159 12 H 0.107 0.893 13 C 0.254 3.746 14 O -0.440 6.440 15 N -0.159 5.159 16 C -0.550 4.550 17 H 0.112 0.888 18 C -0.186 4.186 19 N -0.476 5.476 20 Si 0.878 3.122 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.209 1.209 24 C 0.043 3.957 25 C -0.112 4.112 26 N -0.126 5.126 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.443 -6.459 7.014 9.545 hybrid contribution 0.802 -0.126 1.224 1.468 sum 0.359 -6.585 8.237 10.552 Atomic orbital electron populations 1.21981 0.93111 1.02977 1.02993 1.22829 0.94928 0.95632 0.83452 0.90580 1.89096 1.27241 1.74580 1.38071 1.22955 0.84730 0.97068 0.93256 0.91200 1.21867 1.01217 0.97684 0.99451 1.22426 0.98624 0.95595 0.95979 0.88528 1.21875 1.01715 0.94515 1.01677 1.22806 0.98856 0.97997 0.96224 0.89266 1.19961 0.86757 0.85493 0.82366 1.90543 1.23978 1.52097 1.77430 1.43471 1.12886 1.40566 1.19001 1.20190 0.97241 1.27658 1.09861 0.88800 1.26292 0.93559 0.91840 1.06935 1.70833 1.34054 1.30724 1.12010 0.83745 0.76939 0.77212 0.74281 1.20224 1.20481 1.20917 1.19488 0.91421 0.85047 0.99745 1.30168 0.92868 0.94750 0.93397 1.81033 1.08442 1.13253 1.09914 0.91565 0.91393 0.90400 0.91267 0.92324 0.91478 0.92770 0.92159 0.92315 0.90996 0.87453 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.91 37.16 0.33 -1.70 16 2 C 0.09 1.44 3.48 -25.96 -0.09 1.35 16 3 H 0.08 1.35 7.86 -51.93 -0.41 0.94 16 4 O -0.37 -5.84 11.05 -35.23 -0.39 -6.23 16 5 C 0.08 1.13 3.84 -25.96 -0.10 1.03 16 6 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.15 -1.66 8.42 37.16 0.31 -1.34 16 8 C -0.11 -1.72 3.13 -89.06 -0.28 -2.00 16 9 H 0.10 1.75 7.03 -51.93 -0.37 1.39 16 10 C -0.14 -1.92 7.75 37.16 0.29 -1.63 16 11 C -0.14 -2.39 2.05 -90.21 -0.18 -2.57 16 12 H 0.09 1.47 5.38 -51.93 -0.28 1.19 16 13 C 0.47 10.35 6.53 -10.99 -0.07 10.27 16 14 O -0.56 -14.49 15.71 5.55 0.09 -14.40 16 15 N -0.44 -9.98 2.41 -117.93 -0.28 -10.26 16 16 C -0.42 -10.94 8.82 -14.93 -0.13 -11.07 16 17 H 0.09 2.65 7.76 -52.48 -0.41 2.25 16 18 C 0.02 0.60 4.52 -17.47 -0.08 0.52 16 19 N -0.84 -20.87 12.16 55.50 0.67 -20.19 16 20 Si 1.05 22.41 30.05 -169.99 -5.11 17.30 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.17 3.23 4.92 -6.83 -0.03 3.19 16 25 C 0.21 4.09 15.23 -20.76 -0.32 3.77 16 26 N -0.45 -9.32 18.54 42.15 0.78 -8.54 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.08 1.01 5.94 -51.93 -0.31 0.71 16 30 H 0.07 0.69 7.78 -51.93 -0.40 0.29 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.74 6.59 -51.93 -0.34 0.40 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.70 7.06 -51.93 -0.37 0.33 16 35 H 0.06 0.76 7.46 -51.93 -0.39 0.37 16 36 H 0.28 6.79 8.04 -40.82 -0.33 6.46 16 37 H 0.11 1.66 3.40 -51.93 -0.18 1.48 16 38 H 0.13 2.61 5.59 -51.93 -0.29 2.32 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -29.28 309.42 -4.90 -34.18 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.97 Total: 3.64 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.35 Total: -0.16 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 1.17 Total: -38.99 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.30 Total: -20.63 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.11 Total: 17.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.28 -4.90 -34.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.732 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds