Wall clock time and date at job start Thu Apr 9 2020 13:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.42254 * 2 1 4 4 O 1.44653 * 110.50820 * 122.36331 * 2 1 3 5 5 C 1.44428 * 105.36615 * 159.18254 * 4 2 1 6 6 H 1.09002 * 110.36795 * 78.40317 * 5 4 2 7 7 C 1.53002 * 110.36658 * 200.73192 * 5 4 2 8 8 C 1.54472 * 104.80416 * 319.56530 * 5 4 2 9 9 H 1.09004 * 110.50994 * 142.62566 * 8 5 4 10 10 C 1.53000 * 110.62776 * 265.27713 * 8 5 4 11 11 C 1.54480 * 110.37362 * 237.69077 * 2 1 3 12 12 H 1.09001 * 110.50733 * 335.97682 * 11 2 1 13 13 C 1.50700 * 110.51053 * 98.54226 * 11 2 1 14 14 O 1.21294 * 119.99490 * 80.64160 * 13 11 2 15 15 N 1.34769 * 120.00378 * 260.63729 * 13 11 2 16 16 C 1.37095 * 120.00287 * 183.34244 * 15 13 11 17 17 H 1.08004 * 119.99846 * 28.66112 * 16 15 13 18 18 C 1.38953 * 120.00391 * 208.66979 * 16 15 13 19 19 N 1.31408 * 119.99908 * 39.91751 * 18 16 15 20 20 Si 1.86804 * 119.99886 * 219.92551 * 18 16 15 21 21 H 1.48505 * 109.46672 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.46773 * 299.99040 * 20 18 16 23 23 H 1.48497 * 109.47266 * 59.99580 * 20 18 16 24 24 C 1.46500 * 120.00055 * 3.34021 * 15 13 11 25 25 C 1.47207 * 109.46998 * 268.75447 * 24 15 13 26 26 N 5.36344 * 78.27534 * 241.07824 * 2 1 3 27 27 H 1.08997 * 109.47275 * 186.15975 * 1 2 3 28 28 H 1.09008 * 109.47005 * 306.16106 * 1 2 3 29 29 H 1.09003 * 109.46982 * 66.16092 * 1 2 3 30 30 H 1.09003 * 109.46624 * 175.38238 * 7 5 4 31 31 H 1.08996 * 109.47069 * 295.38183 * 7 5 4 32 32 H 1.08995 * 109.47284 * 55.38642 * 7 5 4 33 33 H 1.09000 * 109.47154 * 174.71525 * 10 8 5 34 34 H 1.09005 * 109.47450 * 294.71289 * 10 8 5 35 35 H 1.08996 * 109.47286 * 54.71454 * 10 8 5 36 36 H 0.97001 * 119.99944 * 6.10733 * 19 18 16 37 37 H 1.09003 * 109.47396 * 28.75317 * 24 15 13 38 38 H 1.09002 * 109.47321 * 148.75610 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0368 -0.7252 1.1444 5 6 3.3901 -1.0911 0.7970 6 1 4.0570 -0.2376 0.9192 7 6 3.8620 -2.2648 1.6576 8 6 3.3172 -1.5084 -0.6884 9 1 4.2101 -1.1814 -1.2213 10 6 3.1439 -3.0233 -0.8148 11 6 2.0678 -0.7740 -1.2240 12 1 1.3266 -1.4902 -1.5787 13 6 2.4482 0.1801 -2.3267 14 8 3.5147 0.7565 -2.2887 15 7 1.6034 0.3929 -3.3549 16 6 1.9775 1.2076 -4.3922 17 1 3.0212 1.3069 -4.6514 18 6 1.0139 1.9057 -5.1098 19 7 -0.0045 2.4514 -4.4837 20 14 1.1662 2.0684 -6.9645 21 1 0.0192 2.8528 -7.4883 22 1 2.4353 2.7636 -7.2978 23 1 1.1647 0.7177 -7.5816 24 6 0.2852 -0.2463 -3.3644 25 6 0.3727 -1.5408 -4.0599 26 7 0.4401 -2.5397 -4.5966 27 1 -0.3634 -1.0217 0.1103 28 1 -0.3633 0.6064 0.8298 29 1 -0.3633 0.4154 -0.9400 30 1 4.8517 -2.5815 1.3287 31 1 3.9080 -1.9545 2.7015 32 1 3.1625 -3.0944 1.5557 33 1 3.0008 -3.2865 -1.8628 34 1 4.0336 -3.5240 -0.4328 35 1 2.2740 -3.3388 -0.2389 36 1 -0.0384 2.4438 -3.5144 37 1 -0.0483 -0.4066 -2.3390 38 1 -0.4268 0.3967 -3.8817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528325847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:41 Heat of formation + Delta-G solvation = -67.619460 kcal Electronic energy + Delta-G solvation = -21494.431083 eV Core-core repulsion = 18336.680771 eV Total energy + Delta-G solvation = -3157.750312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.83873 -39.86659 -37.94051 -36.64210 -34.88366 -34.34788 -33.28329 -30.06133 -29.36021 -28.61798 -26.48810 -24.66839 -23.04452 -21.32333 -20.64320 -20.12698 -19.03299 -18.17969 -17.39431 -16.63359 -16.58657 -16.06029 -15.70431 -15.46140 -15.24211 -15.10256 -14.80249 -14.25663 -14.09767 -13.80133 -13.59308 -13.38832 -13.35773 -13.18411 -13.00409 -12.79582 -12.70088 -12.61459 -12.34502 -12.08715 -11.95298 -11.82550 -11.61029 -11.52814 -11.00829 -10.76220 -10.46698 -10.05517 -8.91196 -6.10095 1.37950 1.41399 1.56758 1.63161 1.80381 1.80925 2.33848 2.62653 2.69050 2.94929 3.10911 3.42059 3.61472 3.72376 3.86522 3.97531 4.04736 4.11623 4.30140 4.35406 4.44088 4.47539 4.51450 4.63798 4.74174 4.79502 4.93418 4.96059 5.03888 5.11003 5.19801 5.21694 5.34823 5.72527 5.83552 5.89152 6.37093 6.46487 6.80070 7.20135 7.74331 8.33755 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.006483 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.681611 B = 4317.711110 C = 4448.895019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 H 0.051 0.949 4 O -0.368 6.368 5 C 0.075 3.925 6 H 0.056 0.944 7 C -0.139 4.139 8 C -0.110 4.110 9 H 0.067 0.933 10 C -0.134 4.134 11 C -0.130 4.130 12 H 0.104 0.896 13 C 0.460 3.540 14 O -0.606 6.606 15 N -0.449 5.449 16 C -0.452 4.452 17 H 0.057 0.943 18 C 0.005 3.995 19 N -0.847 5.847 20 Si 1.093 2.907 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.281 1.281 24 C 0.177 3.823 25 C 0.217 3.783 26 N -0.462 5.462 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.277 0.723 37 H 0.145 0.855 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 -7.196 9.900 12.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 H 0.069 0.931 4 O -0.288 6.288 5 C 0.018 3.982 6 H 0.074 0.926 7 C -0.196 4.196 8 C -0.130 4.130 9 H 0.086 0.914 10 C -0.190 4.190 11 C -0.152 4.152 12 H 0.122 0.878 13 C 0.251 3.749 14 O -0.491 6.491 15 N -0.169 5.169 16 C -0.578 4.578 17 H 0.075 0.925 18 C -0.204 4.204 19 N -0.477 5.477 20 Si 0.914 3.086 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.207 1.207 24 C 0.051 3.949 25 C -0.102 4.102 26 N -0.141 5.141 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.163 0.837 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.760 -7.834 7.991 11.328 hybrid contribution 1.261 0.346 0.959 1.622 sum -0.498 -7.488 8.951 11.680 Atomic orbital electron populations 1.22004 0.90500 1.04640 1.03650 1.22803 0.96900 0.94139 0.82888 0.93125 1.89100 1.27645 1.74313 1.37728 1.23057 0.84191 0.98029 0.92965 0.92623 1.21869 1.02105 0.96301 0.99293 1.22456 0.96626 0.97296 0.96577 0.91450 1.21844 1.03588 0.92429 1.01184 1.22812 1.00109 0.97309 0.95005 0.87768 1.20791 0.85830 0.85365 0.82901 1.90506 1.26008 1.54004 1.78562 1.43581 1.14236 1.40523 1.18528 1.19994 0.96014 1.29911 1.11918 0.92513 1.27220 0.92874 0.90940 1.09410 1.70900 1.34038 1.30830 1.11982 0.83210 0.77322 0.77359 0.70667 1.19095 1.20128 1.20697 1.19647 0.89213 0.84245 1.01813 1.30184 0.92397 0.94605 0.92985 1.81042 1.08770 1.13907 1.10361 0.89561 0.89867 0.90430 0.89760 0.91268 0.90478 0.94198 0.89796 0.90783 0.91311 0.83742 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.91 71.98 0.64 -2.95 16 2 C 0.09 2.84 3.48 31.10 0.11 2.94 16 3 H 0.05 1.83 7.86 -2.39 -0.02 1.81 16 4 O -0.37 -10.92 11.05 -148.98 -1.65 -12.56 16 5 C 0.08 2.11 3.84 31.10 0.12 2.23 16 6 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 7 C -0.14 -2.77 8.42 71.98 0.61 -2.16 16 8 C -0.11 -3.48 3.13 -9.78 -0.03 -3.51 16 9 H 0.07 2.53 7.03 -2.38 -0.02 2.51 16 10 C -0.13 -3.35 7.75 71.98 0.56 -2.79 16 11 C -0.13 -4.49 2.05 -10.53 -0.02 -4.51 16 12 H 0.10 3.23 5.38 -2.39 -0.01 3.22 16 13 C 0.46 21.01 6.53 87.66 0.57 21.58 16 14 O -0.61 -33.06 15.71 -3.07 -0.05 -33.10 16 15 N -0.45 -20.71 2.41 -645.40 -1.56 -22.27 16 16 C -0.45 -24.02 8.82 84.04 0.74 -23.28 16 17 H 0.06 3.39 7.76 -2.91 -0.02 3.37 16 18 C 0.00 0.23 4.52 84.93 0.38 0.61 16 19 N -0.85 -41.44 12.16 21.66 0.26 -41.17 16 20 Si 1.09 45.09 30.05 68.60 2.06 47.15 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 22 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.18 6.54 4.92 84.58 0.42 6.96 16 25 C 0.22 8.30 15.23 89.44 1.36 9.66 16 26 N -0.46 -18.62 18.54 20.01 0.37 -18.25 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.08 1.83 5.94 -2.39 -0.01 1.82 16 30 H 0.08 1.43 7.78 -2.39 -0.02 1.42 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.41 6.59 -2.39 -0.02 1.39 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.70 7.06 -2.38 -0.02 1.68 16 35 H 0.07 1.65 7.46 -2.39 -0.02 1.63 16 36 H 0.28 13.39 8.04 -92.71 -0.75 12.65 16 37 H 0.15 4.17 3.40 -2.39 -0.01 4.16 16 38 H 0.13 4.92 5.59 -2.39 -0.01 4.91 16 Total: -1.00 -64.44 309.42 6.00 -58.44 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.10 Total: 16.99 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.46 Total: 4.78 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -0.92 Total: -81.70 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.69 Total: -45.67 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.06 Total: 47.15 kcal Total: -64.44 6.00 -58.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528325847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.179 kcal (2) G-P(sol) polarization free energy of solvation -64.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds