Wall clock time and date at job start Thu Apr 9 2020 13:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46325 * 2 1 4 4 H 1.09001 * 109.47553 * 304.89258 * 3 2 1 5 5 C 1.50707 * 109.46536 * 184.89997 * 3 2 1 6 6 H 1.07999 * 119.99857 * 245.44983 * 5 3 2 7 7 C 1.37876 * 119.99962 * 65.45302 * 5 3 2 8 8 N 1.31513 * 120.00181 * 9.46597 * 7 5 3 9 9 Si 1.86806 * 119.99553 * 189.46829 * 7 5 3 10 10 H 1.48498 * 109.47099 * 84.99246 * 9 7 5 11 11 H 1.48498 * 109.46867 * 204.99280 * 9 7 5 12 12 H 1.48497 * 109.47232 * 324.98955 * 9 7 5 13 13 N 1.46492 * 109.47747 * 64.90110 * 3 2 1 14 14 C 1.34784 * 120.00082 * 274.99857 * 13 3 2 15 15 O 1.21606 * 119.99529 * 359.97438 * 14 13 3 16 16 C 1.47394 * 120.00365 * 179.97438 * 14 13 3 17 17 C 1.37361 * 128.56348 * 0.14054 * 16 14 13 18 18 O 1.33491 * 106.33852 * 180.25375 * 17 16 14 19 19 N 1.20654 * 113.15711 * 359.74092 * 18 17 16 20 20 C 1.30007 * 112.30710 * 359.97438 * 19 18 17 21 21 C 1.50698 * 127.33923 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47259 * 60.02781 * 21 20 19 23 23 C 1.52999 * 109.47219 * 300.02375 * 21 20 19 24 24 H 1.08993 * 109.47515 * 299.99947 * 1 2 3 25 25 H 1.08996 * 109.47233 * 60.00752 * 1 2 3 26 26 H 1.09002 * 109.46678 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47515 * 240.00053 * 2 1 3 28 28 H 1.08993 * 109.46749 * 119.99324 * 2 1 3 29 29 H 0.96997 * 119.99513 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00252 * 94.99193 * 13 3 2 31 31 H 1.08003 * 126.83186 * 359.97438 * 17 16 14 32 32 H 1.09008 * 109.46932 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.47060 * 300.00309 * 22 21 20 34 34 H 1.09002 * 109.47115 * 59.99543 * 22 21 20 35 35 H 1.08993 * 109.47698 * 179.97438 * 22 21 20 36 36 H 1.09005 * 109.46950 * 179.97438 * 23 21 20 37 37 H 1.08998 * 109.47305 * 300.00323 * 23 21 20 38 38 H 1.08998 * 109.46948 * 60.00369 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6067 1.9811 -0.8429 5 6 3.5421 1.4444 -0.1214 6 1 4.1492 1.8093 0.6939 7 6 4.1412 0.9802 -1.2732 8 7 3.4097 0.7115 -2.3326 9 14 5.9920 0.7331 -1.3288 10 1 6.3291 -0.6063 -0.7833 11 1 6.4619 0.8277 -2.7343 12 1 6.6561 1.7813 -0.5132 13 7 1.6503 2.0983 1.2507 14 6 0.4327 2.6653 1.3635 15 8 -0.3422 2.6328 0.4269 16 6 0.0404 3.3246 2.6221 17 6 0.7689 3.4656 3.7781 18 8 -0.0117 4.1272 4.6354 19 7 -1.0904 4.4092 4.1744 20 6 -1.2265 3.9969 2.9490 21 6 -2.4288 4.1651 2.0562 22 6 -2.7188 5.6553 1.8666 23 6 -3.6405 3.4875 2.6994 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8312 0.3847 -3.1427 30 1 2.2685 2.1245 1.9977 31 1 1.7718 3.1080 3.9591 32 1 -2.2286 3.7077 1.0872 33 1 -2.9189 6.1126 2.8356 34 1 -1.8556 6.1380 1.4085 35 1 -3.5881 5.7771 1.2206 36 1 -4.5102 3.6096 2.0537 37 1 -3.4339 2.4258 2.8344 38 1 -3.8407 3.9448 3.6683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529036140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:46 Heat of formation + Delta-G solvation = 0.696610 kcal Electronic energy + Delta-G solvation = -20648.500260 eV Core-core repulsion = 17493.712355 eV Total energy + Delta-G solvation = -3154.787905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.76395 -39.00197 -36.25439 -35.02177 -32.93705 -32.11830 -31.54816 -30.73688 -27.15808 -27.14681 -24.54580 -23.49425 -22.90088 -20.60726 -20.04664 -19.32509 -18.13750 -17.54211 -16.67827 -15.69531 -15.45622 -14.77599 -14.65465 -14.50272 -14.14902 -13.58792 -13.27174 -12.97528 -12.74836 -12.23866 -12.22094 -11.70750 -11.54904 -11.42293 -11.29711 -11.29384 -11.05275 -10.84101 -10.70942 -10.40905 -10.26892 -9.81951 -9.76212 -9.51362 -9.23100 -9.17181 -8.53973 -7.96259 -6.20274 -4.26216 1.29095 1.95978 3.11681 3.21635 3.28975 3.29702 3.80594 3.89310 4.19160 4.33541 4.41175 5.01787 5.12994 5.13248 5.15694 5.23719 5.48353 5.60521 5.61883 5.80665 5.82058 5.96400 6.09104 6.22328 6.29536 6.33733 6.44650 6.54310 6.93478 7.10062 7.23612 7.31243 7.53384 7.63879 7.76265 7.99939 8.30839 8.54654 8.71478 8.98990 9.39729 10.87928 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.004992 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.044858 B = 5607.886432 C = 6068.458668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.059 0.941 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.071 3.929 8 N -0.878 5.878 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.698 5.698 14 C 0.578 3.422 15 O -0.535 6.535 16 C -0.238 4.238 17 C -0.021 4.021 18 O 0.090 5.910 19 N -0.362 5.362 20 C 0.074 3.926 21 C -0.026 4.026 22 C -0.141 4.141 23 C -0.140 4.140 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.024 0.976 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.266 0.734 30 H 0.386 0.614 31 H 0.224 0.776 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 4.443 10.484 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.077 0.923 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.346 5.346 14 C 0.362 3.638 15 O -0.414 6.414 16 C -0.245 4.245 17 C -0.103 4.103 18 O 0.030 5.970 19 N -0.069 5.069 20 C -0.089 4.089 21 C -0.046 4.046 22 C -0.199 4.199 23 C -0.198 4.198 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.241 0.759 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.184 4.992 10.446 14.178 hybrid contribution 1.887 -0.659 -0.310 2.023 sum -6.297 4.332 10.136 12.695 Atomic orbital electron populations 1.21854 0.97986 0.98291 1.01533 1.21860 0.93018 0.99726 1.01294 1.18863 0.94507 0.88933 0.80877 0.92316 1.21142 0.90384 1.44358 1.01913 0.92054 1.24874 0.98505 0.95046 0.94932 1.69977 1.35830 1.43504 1.02167 0.86526 0.84902 0.78737 0.77335 1.20387 1.21142 1.19893 1.46382 1.13864 1.55552 1.18754 1.16849 0.83068 0.78901 0.84940 1.90739 1.51519 1.59998 1.39125 1.22812 0.95563 1.08374 0.97749 1.26396 0.98718 0.96130 0.89097 1.84530 1.18676 1.55273 1.38478 1.73555 1.00336 1.20601 1.12406 1.24802 0.96406 0.96341 0.91362 1.19807 0.88945 0.97663 0.98151 1.21796 1.01917 0.94269 1.01869 1.21796 0.96708 1.00610 1.00697 0.94074 0.92841 0.95700 0.90098 0.94646 0.92465 0.78151 0.75927 0.86581 0.92520 0.92431 0.91684 0.91689 0.92479 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.65 16 2 C -0.12 -2.76 5.50 -26.73 -0.15 -2.90 16 3 C 0.27 6.45 2.11 -69.08 -0.15 6.30 16 4 H 0.06 1.65 7.52 -51.93 -0.39 1.26 16 5 C -0.54 -13.63 8.66 -34.44 -0.30 -13.93 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -24.15 12.16 55.43 0.67 -23.47 16 9 Si 0.90 19.97 29.55 -169.99 -5.02 14.95 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.70 -13.59 5.02 -56.02 -0.28 -13.87 16 14 C 0.58 11.13 6.38 -12.53 -0.08 11.05 16 15 O -0.53 -11.87 12.39 5.27 0.07 -11.80 16 16 C -0.24 -3.76 6.47 -102.89 -0.67 -4.43 16 17 C -0.02 -0.26 11.85 30.41 0.36 0.10 16 18 O 0.09 1.19 11.06 18.66 0.21 1.39 16 19 N -0.36 -5.36 12.01 34.78 0.42 -4.95 16 20 C 0.07 1.14 6.09 -79.77 -0.49 0.65 16 21 C -0.03 -0.37 3.33 -91.77 -0.31 -0.68 16 22 C -0.14 -1.72 9.18 37.16 0.34 -1.38 16 23 C -0.14 -1.70 9.18 37.16 0.34 -1.35 16 24 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 2.06 6.80 -51.93 -0.35 1.70 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 6.28 7.71 -40.82 -0.31 5.96 16 31 H 0.22 1.73 7.68 -52.48 -0.40 1.32 16 32 H 0.12 1.88 6.29 -51.92 -0.33 1.55 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -29.49 316.58 -5.44 -34.93 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.41 Total: 5.51 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.86 Total: -7.47 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.81 Total: -42.29 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.27 Total: -10.41 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.49 -5.44 -34.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.631 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds