Wall clock time and date at job start Thu Apr 9 2020 13:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46325 * 2 1 4 4 H 1.09001 * 109.47553 * 304.89258 * 3 2 1 5 5 C 1.50707 * 109.46536 * 184.89997 * 3 2 1 6 6 H 1.07999 * 119.99857 * 245.44983 * 5 3 2 7 7 C 1.37876 * 119.99962 * 65.45302 * 5 3 2 8 8 N 1.31513 * 120.00181 * 9.46597 * 7 5 3 9 9 Si 1.86806 * 119.99553 * 189.46829 * 7 5 3 10 10 H 1.48498 * 109.47099 * 84.99246 * 9 7 5 11 11 H 1.48498 * 109.46867 * 204.99280 * 9 7 5 12 12 H 1.48497 * 109.47232 * 324.98955 * 9 7 5 13 13 N 1.46492 * 109.47747 * 64.90110 * 3 2 1 14 14 C 1.34784 * 120.00082 * 274.99857 * 13 3 2 15 15 O 1.21606 * 119.99529 * 359.97438 * 14 13 3 16 16 C 1.47394 * 120.00365 * 179.97438 * 14 13 3 17 17 C 1.37361 * 128.56348 * 0.14054 * 16 14 13 18 18 O 1.33491 * 106.33852 * 180.25375 * 17 16 14 19 19 N 1.20654 * 113.15711 * 359.74092 * 18 17 16 20 20 C 1.30007 * 112.30710 * 359.97438 * 19 18 17 21 21 C 1.50698 * 127.33923 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47259 * 60.02781 * 21 20 19 23 23 C 1.52999 * 109.47219 * 300.02375 * 21 20 19 24 24 H 1.08993 * 109.47515 * 299.99947 * 1 2 3 25 25 H 1.08996 * 109.47233 * 60.00752 * 1 2 3 26 26 H 1.09002 * 109.46678 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47515 * 240.00053 * 2 1 3 28 28 H 1.08993 * 109.46749 * 119.99324 * 2 1 3 29 29 H 0.96997 * 119.99513 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00252 * 94.99193 * 13 3 2 31 31 H 1.08003 * 126.83186 * 359.97438 * 17 16 14 32 32 H 1.09008 * 109.46932 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.47060 * 300.00309 * 22 21 20 34 34 H 1.09002 * 109.47115 * 59.99543 * 22 21 20 35 35 H 1.08993 * 109.47698 * 179.97438 * 22 21 20 36 36 H 1.09005 * 109.46950 * 179.97438 * 23 21 20 37 37 H 1.08998 * 109.47305 * 300.00323 * 23 21 20 38 38 H 1.08998 * 109.46948 * 60.00369 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6067 1.9811 -0.8429 5 6 3.5421 1.4444 -0.1214 6 1 4.1492 1.8093 0.6939 7 6 4.1412 0.9802 -1.2732 8 7 3.4097 0.7115 -2.3326 9 14 5.9920 0.7331 -1.3288 10 1 6.3291 -0.6063 -0.7833 11 1 6.4619 0.8277 -2.7343 12 1 6.6561 1.7813 -0.5132 13 7 1.6503 2.0983 1.2507 14 6 0.4327 2.6653 1.3635 15 8 -0.3422 2.6328 0.4269 16 6 0.0404 3.3246 2.6221 17 6 0.7689 3.4656 3.7781 18 8 -0.0117 4.1272 4.6354 19 7 -1.0904 4.4092 4.1744 20 6 -1.2265 3.9969 2.9490 21 6 -2.4288 4.1651 2.0562 22 6 -2.7188 5.6553 1.8666 23 6 -3.6405 3.4875 2.6994 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8312 0.3847 -3.1427 30 1 2.2685 2.1245 1.9977 31 1 1.7718 3.1080 3.9591 32 1 -2.2286 3.7077 1.0872 33 1 -2.9189 6.1126 2.8356 34 1 -1.8556 6.1380 1.4085 35 1 -3.5881 5.7771 1.2206 36 1 -4.5102 3.6096 2.0537 37 1 -3.4339 2.4258 2.8344 38 1 -3.8407 3.9448 3.6683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529036140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:45 Heat of formation + Delta-G solvation = -17.954047 kcal Electronic energy + Delta-G solvation = -20649.309013 eV Core-core repulsion = 17493.712355 eV Total energy + Delta-G solvation = -3155.596658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.90164 -40.59299 -37.43013 -36.72068 -34.50021 -33.73117 -32.76766 -32.27997 -29.00726 -28.12660 -26.00745 -24.67545 -24.56216 -22.19179 -21.42935 -20.73255 -19.57814 -18.66881 -18.19740 -17.25539 -17.16980 -16.27108 -16.18545 -15.75706 -15.54636 -14.93797 -14.58952 -14.28550 -14.24818 -13.91219 -13.43560 -13.28291 -13.15537 -12.94588 -12.76090 -12.60388 -12.33070 -12.31944 -12.19767 -12.05677 -11.82385 -11.60974 -11.08591 -10.91371 -10.81794 -10.69899 -10.51130 -9.67531 -8.17692 -6.30444 0.17342 0.78425 1.47505 1.48423 1.57425 2.03574 2.33920 2.39798 2.60113 3.04572 3.14998 3.30327 3.89308 4.07766 4.13306 4.15323 4.26303 4.48109 4.54309 4.59767 4.70099 4.71836 4.76040 4.84890 4.92749 5.07622 5.08761 5.24197 5.25449 5.35875 5.42206 5.52222 5.62343 5.76123 5.91121 6.07437 6.77438 6.92730 7.23735 7.34287 7.52024 8.91089 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.004992 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.044858 B = 5607.886432 C = 6068.458668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.693 5.693 14 C 0.580 3.420 15 O -0.573 6.573 16 C -0.278 4.278 17 C 0.024 3.976 18 O 0.099 5.901 19 N -0.370 5.370 20 C 0.064 3.936 21 C -0.032 4.032 22 C -0.134 4.134 23 C -0.133 4.133 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.264 0.736 30 H 0.405 0.595 31 H 0.272 0.728 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 4.625 12.914 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.187 1.187 13 N -0.342 5.342 14 C 0.367 3.633 15 O -0.454 6.454 16 C -0.286 4.286 17 C -0.058 4.058 18 O 0.041 5.959 19 N -0.077 5.077 20 C -0.098 4.098 21 C -0.052 4.052 22 C -0.192 4.192 23 C -0.191 4.191 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.240 0.760 31 H 0.287 0.713 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.233 5.191 12.932 15.701 hybrid contribution 1.571 -0.674 -1.028 1.994 sum -5.662 4.517 11.904 13.935 Atomic orbital electron populations 1.21690 0.96814 0.99326 1.00440 1.21713 0.93957 0.98971 1.00534 1.18424 0.93882 0.89019 0.81165 0.97620 1.21530 0.91135 1.43720 1.02226 0.90551 1.25740 1.02987 0.94837 0.94602 1.70131 1.37781 1.44748 1.02810 0.85456 0.79423 0.79057 0.77001 1.19622 1.21754 1.18653 1.46050 1.14601 1.55621 1.17950 1.17188 0.82291 0.78138 0.85684 1.90726 1.52522 1.61257 1.40902 1.22446 0.97201 1.11203 0.97718 1.27143 0.99205 0.92518 0.86900 1.84532 1.18356 1.54800 1.38246 1.73560 1.01080 1.21082 1.11959 1.25018 0.96741 0.96320 0.91760 1.19835 0.89606 0.98813 0.96908 1.21756 1.02138 0.92833 1.02489 1.21750 0.96437 0.99714 1.01206 0.93699 0.95373 0.93451 0.92958 0.93046 0.92675 0.76002 0.71265 0.89319 0.91852 0.93673 0.89887 0.89917 0.93468 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.51 71.99 0.61 -4.79 16 2 C -0.11 -5.23 5.50 30.60 0.17 -5.06 16 3 C 0.28 13.54 2.11 44.25 0.09 13.63 16 4 H 0.01 0.35 7.52 -2.39 -0.02 0.33 16 5 C -0.55 -27.47 8.66 25.60 0.22 -27.25 16 6 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.99 5.16 84.65 0.44 1.42 16 8 N -0.92 -51.77 12.16 21.45 0.26 -51.51 16 9 Si 0.97 40.57 29.55 68.60 2.03 42.60 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 13 N -0.69 -26.54 5.02 -449.40 -2.25 -28.79 16 14 C 0.58 22.37 6.38 86.65 0.55 22.93 16 15 O -0.57 -26.43 12.39 -4.05 -0.05 -26.49 16 16 C -0.28 -8.44 6.47 -18.74 -0.12 -8.56 16 17 C 0.02 0.50 11.85 67.61 0.80 1.31 16 18 O 0.10 2.30 11.06 77.01 0.85 3.15 16 19 N -0.37 -10.22 12.01 -44.79 -0.54 -10.75 16 20 C 0.06 1.92 6.09 45.16 0.28 2.20 16 21 C -0.03 -0.91 3.33 -11.54 -0.04 -0.95 16 22 C -0.13 -3.20 9.18 71.98 0.66 -2.54 16 23 C -0.13 -3.11 9.18 71.98 0.66 -2.45 16 24 H 0.04 1.88 5.65 -2.39 -0.01 1.86 16 25 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 2.73 6.80 -2.39 -0.02 2.71 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.40 12.19 7.71 -92.71 -0.71 11.47 16 31 H 0.27 2.71 7.68 -2.91 -0.02 2.68 16 32 H 0.09 3.00 6.29 -2.38 -0.01 2.99 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.19 316.58 4.97 -61.22 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.35 Total: 20.68 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.32 Total: -10.12 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -2.53 Total: -91.06 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.80 Total: -23.33 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -66.19 4.97 -61.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.264 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds