Wall clock time and date at job start Thu Apr 9 2020 13:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47246 * 2 1 4 4 H 1.08996 * 109.46914 * 54.99690 * 3 2 1 5 5 C 1.50700 * 109.47180 * 175.00326 * 3 2 1 6 6 H 1.07995 * 120.00642 * 120.00068 * 5 3 2 7 7 C 1.37884 * 119.99640 * 299.99619 * 5 3 2 8 8 N 1.31508 * 120.00068 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99971 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47040 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47160 * 119.99855 * 9 7 5 12 12 H 1.48500 * 109.47169 * 240.00121 * 9 7 5 13 13 N 1.46505 * 109.46946 * 294.99916 * 3 2 1 14 14 C 1.34771 * 120.00083 * 84.99893 * 13 3 2 15 15 O 1.21613 * 120.00098 * 0.02562 * 14 13 3 16 16 C 1.47396 * 120.00167 * 180.02562 * 14 13 3 17 17 C 1.37362 * 128.56345 * 0.13235 * 16 14 13 18 18 O 1.33499 * 106.34142 * 180.26124 * 17 16 14 19 19 N 1.20656 * 113.15324 * 359.74369 * 18 17 16 20 20 C 1.30017 * 112.30706 * 359.97438 * 19 18 17 21 21 C 1.50699 * 127.33837 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47078 * 300.02652 * 21 20 19 23 23 C 1.53006 * 109.46866 * 60.02475 * 21 20 19 24 24 H 1.09001 * 109.46929 * 60.00007 * 1 2 3 25 25 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46863 * 300.00327 * 1 2 3 27 27 H 1.09001 * 109.47493 * 239.99852 * 2 1 3 28 28 H 1.09001 * 109.46929 * 119.99993 * 2 1 3 29 29 H 0.97005 * 120.00219 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99519 * 265.00330 * 13 3 2 31 31 H 1.07998 * 126.83080 * 0.02562 * 17 16 14 32 32 H 1.08996 * 109.46924 * 180.02562 * 21 20 19 33 33 H 1.09002 * 109.47153 * 299.99793 * 22 21 20 34 34 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 35 35 H 1.09004 * 109.47261 * 59.99965 * 22 21 20 36 36 H 1.08993 * 109.46955 * 300.00219 * 23 21 20 37 37 H 1.09000 * 109.47050 * 60.00048 * 23 21 20 38 38 H 1.09001 * 109.47002 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8812 1.3818 10 1 6.5987 1.5472 0.1948 11 1 6.3990 1.6167 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3413 2.6326 -0.4317 16 6 0.0451 3.3228 -2.6267 17 6 0.7735 3.4586 -3.7833 18 8 -0.0004 4.1317 -4.6378 19 7 -1.0789 4.4164 -4.1779 20 6 -1.2217 3.9941 -2.9566 21 6 -2.4255 4.1629 -2.0659 22 6 -2.7063 5.6534 -1.8650 23 6 -3.6397 3.4986 -2.7183 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0618 2.9495 30 1 2.2720 2.1230 -1.9978 31 1 1.7748 3.0965 -3.9641 32 1 -2.2312 3.6964 -1.1002 33 1 -1.8413 6.1267 -1.4003 34 1 -3.5773 5.7755 -1.2211 35 1 -2.9005 6.1200 -2.8308 36 1 -3.8339 3.9652 -3.6840 37 1 -3.4397 2.4367 -2.8614 38 1 -4.5104 3.6203 -2.0738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529036141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:52 Heat of formation + Delta-G solvation = 2.001319 kcal Electronic energy + Delta-G solvation = -20656.143715 eV Core-core repulsion = 17501.412387 eV Total energy + Delta-G solvation = -3154.731328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.76234 -38.99847 -36.25530 -35.03424 -32.95022 -32.11304 -31.53391 -30.66825 -27.15930 -27.14609 -24.54247 -23.49550 -22.90150 -20.57100 -20.03331 -19.30262 -18.13396 -17.54155 -16.68481 -15.71468 -15.44254 -14.77168 -14.66013 -14.50111 -14.14431 -13.57685 -13.27307 -12.97669 -12.73153 -12.23414 -12.18380 -11.71481 -11.58247 -11.35489 -11.29663 -11.26415 -11.00474 -10.90254 -10.71052 -10.36113 -10.24687 -9.80394 -9.70754 -9.51031 -9.25639 -9.10187 -8.56538 -7.93888 -6.18206 -4.28022 1.29070 1.95873 3.11671 3.20103 3.28489 3.30401 3.80733 3.89270 4.18839 4.33052 4.41147 5.01715 5.12674 5.13937 5.15482 5.23613 5.48533 5.60478 5.61657 5.80443 5.81920 5.96223 6.08910 6.22099 6.34703 6.41034 6.44731 6.61086 6.98896 7.13782 7.28008 7.34446 7.55380 7.65541 7.82804 8.11165 8.30732 8.54391 8.69951 8.98982 9.39369 10.87174 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.004994 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.902135 B = 5605.916601 C = 6078.612211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.698 5.698 14 C 0.578 3.422 15 O -0.535 6.535 16 C -0.238 4.238 17 C -0.021 4.021 18 O 0.090 5.910 19 N -0.362 5.362 20 C 0.074 3.926 21 C -0.026 4.026 22 C -0.141 4.141 23 C -0.140 4.140 24 H 0.038 0.962 25 H 0.023 0.977 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.224 0.776 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.760 5.091 -10.140 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.346 5.346 14 C 0.362 3.638 15 O -0.415 6.415 16 C -0.245 4.245 17 C -0.103 4.103 18 O 0.030 5.970 19 N -0.069 5.069 20 C -0.089 4.089 21 C -0.046 4.046 22 C -0.198 4.198 23 C -0.198 4.198 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.241 0.759 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.025 5.622 -10.121 14.086 hybrid contribution 1.855 -0.528 0.340 1.958 sum -6.170 5.094 -9.781 12.636 Atomic orbital electron populations 1.21847 0.98301 0.98161 1.01243 1.21944 0.92660 0.99646 1.02406 1.18862 0.94381 0.89219 0.80563 0.93011 1.21236 0.90529 1.39215 1.06418 0.91995 1.24877 0.98661 0.94716 0.95335 1.69896 1.35114 1.37457 1.09346 0.86397 0.84754 0.77809 0.78164 1.19732 1.20857 1.20842 1.46399 1.13856 1.55530 1.18780 1.16847 0.83079 0.78893 0.84947 1.90738 1.51401 1.60023 1.39290 1.22814 0.95558 1.08457 0.97665 1.26397 0.98796 0.96093 0.89058 1.84532 1.18946 1.54784 1.38695 1.73558 1.00237 1.20563 1.12542 1.24804 0.96388 0.96332 0.91395 1.19806 0.88914 0.97717 0.98122 1.21799 1.01923 0.94263 1.01857 1.21797 0.96688 1.00678 1.00657 0.94341 0.95778 0.93037 0.94973 0.88149 0.92533 0.78125 0.75927 0.86590 0.92434 0.91686 0.92524 0.92516 0.92480 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.33 16 9 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.70 -13.65 5.02 -56.02 -0.28 -13.93 16 14 C 0.58 11.15 6.38 -12.54 -0.08 11.07 16 15 O -0.54 -11.89 12.39 5.27 0.07 -11.82 16 16 C -0.24 -3.77 6.47 -102.89 -0.67 -4.44 16 17 C -0.02 -0.26 11.85 30.41 0.36 0.10 16 18 O 0.09 1.19 11.06 18.64 0.21 1.39 16 19 N -0.36 -5.37 12.01 34.78 0.42 -4.95 16 20 C 0.07 1.14 6.09 -79.76 -0.49 0.65 16 21 C -0.03 -0.37 3.33 -91.77 -0.31 -0.68 16 22 C -0.14 -1.72 9.18 37.16 0.34 -1.37 16 23 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 24 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.39 6.33 7.72 -40.82 -0.32 6.01 16 31 H 0.22 1.74 7.68 -52.49 -0.40 1.34 16 32 H 0.12 1.88 6.29 -51.93 -0.33 1.55 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -29.31 315.22 -5.48 -34.79 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.37 Total: 5.80 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.87 Total: -7.65 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.76 Total: -42.21 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.27 Total: -10.43 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.31 -5.48 -34.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.790 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds