Wall clock time and date at job start Thu Apr 9 2020 13:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47246 * 2 1 4 4 H 1.08996 * 109.46914 * 54.99690 * 3 2 1 5 5 C 1.50700 * 109.47180 * 175.00326 * 3 2 1 6 6 H 1.07995 * 120.00642 * 120.00068 * 5 3 2 7 7 C 1.37884 * 119.99640 * 299.99619 * 5 3 2 8 8 N 1.31508 * 120.00068 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99971 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47040 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47160 * 119.99855 * 9 7 5 12 12 H 1.48500 * 109.47169 * 240.00121 * 9 7 5 13 13 N 1.46505 * 109.46946 * 294.99916 * 3 2 1 14 14 C 1.34771 * 120.00083 * 84.99893 * 13 3 2 15 15 O 1.21613 * 120.00098 * 0.02562 * 14 13 3 16 16 C 1.47396 * 120.00167 * 180.02562 * 14 13 3 17 17 C 1.37362 * 128.56345 * 0.13235 * 16 14 13 18 18 O 1.33499 * 106.34142 * 180.26124 * 17 16 14 19 19 N 1.20656 * 113.15324 * 359.74369 * 18 17 16 20 20 C 1.30017 * 112.30706 * 359.97438 * 19 18 17 21 21 C 1.50699 * 127.33837 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47078 * 300.02652 * 21 20 19 23 23 C 1.53006 * 109.46866 * 60.02475 * 21 20 19 24 24 H 1.09001 * 109.46929 * 60.00007 * 1 2 3 25 25 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46863 * 300.00327 * 1 2 3 27 27 H 1.09001 * 109.47493 * 239.99852 * 2 1 3 28 28 H 1.09001 * 109.46929 * 119.99993 * 2 1 3 29 29 H 0.97005 * 120.00219 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99519 * 265.00330 * 13 3 2 31 31 H 1.07998 * 126.83080 * 0.02562 * 17 16 14 32 32 H 1.08996 * 109.46924 * 180.02562 * 21 20 19 33 33 H 1.09002 * 109.47153 * 299.99793 * 22 21 20 34 34 H 1.09001 * 109.46832 * 179.97438 * 22 21 20 35 35 H 1.09004 * 109.47261 * 59.99965 * 22 21 20 36 36 H 1.08993 * 109.46955 * 300.00219 * 23 21 20 37 37 H 1.09000 * 109.47050 * 60.00048 * 23 21 20 38 38 H 1.09001 * 109.47002 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8812 1.3818 10 1 6.5987 1.5472 0.1948 11 1 6.3990 1.6167 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3671 15 8 -0.3413 2.6326 -0.4317 16 6 0.0451 3.3228 -2.6267 17 6 0.7735 3.4586 -3.7833 18 8 -0.0004 4.1317 -4.6378 19 7 -1.0789 4.4164 -4.1779 20 6 -1.2217 3.9941 -2.9566 21 6 -2.4255 4.1629 -2.0659 22 6 -2.7063 5.6534 -1.8650 23 6 -3.6397 3.4986 -2.7183 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0618 2.9495 30 1 2.2720 2.1230 -1.9978 31 1 1.7748 3.0965 -3.9641 32 1 -2.2312 3.6964 -1.1002 33 1 -1.8413 6.1267 -1.4003 34 1 -3.5773 5.7755 -1.2211 35 1 -2.9005 6.1200 -2.8308 36 1 -3.8339 3.9652 -3.6840 37 1 -3.4397 2.4367 -2.8614 38 1 -4.5104 3.6203 -2.0738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529036141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:48 Heat of formation + Delta-G solvation = -16.365469 kcal Electronic energy + Delta-G solvation = -20656.940159 eV Core-core repulsion = 17501.412387 eV Total energy + Delta-G solvation = -3155.527772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -45.90220 -40.59389 -37.43552 -36.73794 -34.51959 -33.69282 -32.75192 -32.25427 -29.00872 -28.12741 -26.00715 -24.68004 -24.56450 -22.15577 -21.41843 -20.73046 -19.57761 -18.67041 -18.20565 -17.27030 -17.16239 -16.27898 -16.17964 -15.75910 -15.53633 -14.93463 -14.59828 -14.28464 -14.24436 -13.88677 -13.48500 -13.17578 -13.15651 -12.91267 -12.74977 -12.69595 -12.32786 -12.31911 -12.14747 -12.03150 -11.82043 -11.57623 -11.03425 -10.91620 -10.83732 -10.70285 -10.51993 -9.66302 -8.14547 -6.31448 0.16970 0.78132 1.46353 1.48364 1.59116 2.03264 2.33848 2.39151 2.60144 3.04309 3.16047 3.30105 3.89062 4.07568 4.13154 4.15175 4.26046 4.51108 4.58291 4.59618 4.70002 4.73356 4.78458 4.84765 4.92655 5.08478 5.08857 5.24074 5.28018 5.35998 5.44510 5.56016 5.62085 5.80588 5.92354 6.17782 6.75894 6.92588 7.23362 7.34057 7.51857 8.91111 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.004994 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.902135 B = 5605.916601 C = 6078.612211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.002 0.998 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.694 5.694 14 C 0.580 3.420 15 O -0.573 6.573 16 C -0.278 4.278 17 C 0.024 3.976 18 O 0.099 5.901 19 N -0.370 5.370 20 C 0.064 3.936 21 C -0.032 4.032 22 C -0.134 4.134 23 C -0.133 4.133 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.264 0.736 30 H 0.405 0.595 31 H 0.272 0.728 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 5.478 -12.409 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.094 0.906 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.182 1.182 11 H -0.213 1.213 12 H -0.206 1.206 13 N -0.342 5.342 14 C 0.367 3.633 15 O -0.454 6.454 16 C -0.286 4.286 17 C -0.058 4.058 18 O 0.041 5.959 19 N -0.077 5.077 20 C -0.098 4.098 21 C -0.052 4.052 22 C -0.192 4.192 23 C -0.191 4.191 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.287 0.713 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.104 6.028 -12.443 15.545 hybrid contribution 1.548 -0.619 1.013 1.951 sum -5.556 5.409 -11.430 13.812 Atomic orbital electron populations 1.21681 0.97113 0.99103 1.00235 1.21794 0.93615 0.99114 1.01478 1.18424 0.93817 0.89130 0.80953 0.98055 1.21594 0.91197 1.38806 1.06740 0.90630 1.25734 1.03104 0.94428 0.95078 1.70049 1.36978 1.38402 1.09926 0.85348 0.79351 0.77721 0.78211 1.18202 1.21340 1.20643 1.46065 1.14604 1.55602 1.17967 1.17185 0.82289 0.78122 0.85702 1.90724 1.52383 1.61272 1.41048 1.22449 0.97205 1.11285 0.97631 1.27139 0.99252 0.92525 0.86869 1.84534 1.18621 1.54325 1.38457 1.73564 1.00973 1.21036 1.12109 1.25023 0.96719 0.96296 0.91789 1.19836 0.89560 0.98861 0.96897 1.21758 1.02162 0.92817 1.02465 1.21752 0.96429 0.99785 1.01159 0.93960 0.93716 0.95392 0.93820 0.90925 0.92649 0.76014 0.71299 0.89308 0.93658 0.89876 0.91866 0.91889 0.93488 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.57 16 3 C 0.28 13.66 2.24 44.25 0.10 13.76 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 5 C -0.55 -27.33 8.73 25.60 0.22 -27.11 16 6 H 0.08 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.87 5.29 84.66 0.45 1.31 16 8 N -0.92 -50.90 11.29 21.45 0.24 -50.66 16 9 Si 0.97 40.55 29.54 68.60 2.03 42.57 16 10 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.69 -26.67 5.02 -449.39 -2.25 -28.92 16 14 C 0.58 22.41 6.38 86.66 0.55 22.97 16 15 O -0.57 -26.41 12.39 -4.07 -0.05 -26.46 16 16 C -0.28 -8.46 6.47 -18.74 -0.12 -8.58 16 17 C 0.02 0.50 11.85 67.61 0.80 1.30 16 18 O 0.10 2.31 11.06 76.94 0.85 3.16 16 19 N -0.37 -10.23 12.01 -44.76 -0.54 -10.77 16 20 C 0.06 1.93 6.09 45.16 0.28 2.20 16 21 C -0.03 -0.90 3.33 -11.54 -0.04 -0.94 16 22 C -0.13 -3.19 9.18 71.98 0.66 -2.53 16 23 C -0.13 -3.12 9.18 71.98 0.66 -2.46 16 24 H 0.04 1.80 5.65 -2.39 -0.01 1.78 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 29 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 30 H 0.40 12.32 7.72 -92.71 -0.72 11.60 16 31 H 0.27 2.76 7.68 -2.91 -0.02 2.74 16 32 H 0.09 3.00 6.29 -2.39 -0.02 2.98 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.42 315.22 4.97 -60.45 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.35 Total: 21.10 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 4.34 Total: -10.47 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -2.55 Total: -90.35 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.80 Total: -23.30 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -65.42 4.97 -60.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529036141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.084 kcal (2) G-P(sol) polarization free energy of solvation -65.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds