Wall clock time and date at job start Thu Apr 9 2020 13:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00216 * 2 1 4 4 N 1.46497 * 109.47401 * 125.70144 * 3 2 1 5 5 C 1.46502 * 120.00269 * 277.89863 * 4 3 2 6 6 C 1.50707 * 109.47198 * 270.00350 * 5 4 3 7 7 H 1.07995 * 119.99701 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00066 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99941 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00209 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47167 * 59.99834 * 10 8 6 12 12 H 1.48497 * 109.47423 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47269 * 300.00286 * 10 8 6 14 14 C 1.34775 * 120.00046 * 97.90027 * 4 3 2 15 15 O 1.21281 * 120.00053 * 176.04268 * 14 4 3 16 16 C 1.50702 * 120.00109 * 356.04451 * 14 4 3 17 17 C 1.50701 * 112.85138 * 59.86956 * 16 14 4 18 18 N 1.34776 * 119.99363 * 43.82313 * 17 16 14 19 19 O 1.21278 * 119.99979 * 223.54625 * 17 16 14 20 20 C 1.53775 * 113.68992 * 191.14376 * 16 14 4 21 21 C 1.53785 * 87.08487 * 89.12536 * 20 16 14 22 22 C 1.53781 * 87.08105 * 25.43038 * 21 20 16 23 23 H 1.08000 * 119.99829 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99739 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00176 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47007 * 5.69840 * 3 2 1 27 27 H 1.09006 * 109.47263 * 245.70266 * 3 2 1 28 28 H 1.09008 * 109.46657 * 29.99892 * 5 4 3 29 29 H 1.08989 * 109.47337 * 149.99903 * 5 4 3 30 30 H 0.97003 * 120.00108 * 179.97438 * 9 8 6 31 31 H 0.97004 * 119.99693 * 184.73341 * 18 17 16 32 32 H 0.96998 * 120.00777 * 4.72996 * 18 17 16 33 33 H 1.09004 * 113.61412 * 203.67393 * 20 16 14 34 34 H 1.09001 * 113.61750 * 334.57317 * 20 16 14 35 35 H 1.08996 * 113.61207 * 270.88439 * 21 20 16 36 36 H 1.08997 * 113.69254 * 139.99020 * 21 20 16 37 37 H 1.08994 * 113.61916 * 220.02375 * 22 21 20 38 38 H 1.08999 * 113.69056 * 89.12836 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0057 1.3250 1.1216 5 6 2.5403 1.6859 2.4630 6 6 2.6697 3.1750 2.6559 7 1 3.0599 3.7907 1.8591 8 6 2.2898 3.7511 3.8495 9 7 1.8140 3.0012 4.8196 10 14 2.4508 5.5966 4.0888 11 1 1.6284 6.3011 3.0727 12 1 1.9789 5.9625 5.4485 13 1 3.8737 5.9934 3.9358 14 6 4.3008 1.0113 0.9194 15 8 5.0951 1.0971 1.8319 16 6 4.7619 0.5540 -0.4405 17 6 4.5189 1.5805 -1.5166 18 7 4.8025 2.8779 -1.2867 19 8 4.0728 1.2385 -2.5913 20 6 6.1882 -0.0208 -0.4482 21 6 5.5542 -1.3887 -0.1446 22 6 4.2758 -0.8566 -0.8135 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3596 2.1310 0.1020 27 1 2.6114 1.4083 -0.9367 28 1 1.4960 1.3943 2.5759 29 1 3.1445 1.1691 3.2085 30 1 1.5471 3.4065 5.6595 31 1 4.5826 3.5479 -1.9528 32 1 5.2264 3.1417 -0.4551 33 1 6.6736 0.0287 -1.4229 34 1 6.8161 0.3581 0.3582 35 1 5.4385 -1.5895 0.9205 36 1 6.0173 -2.2153 -0.6833 37 1 3.3599 -1.1522 -0.3021 38 1 4.2370 -1.0350 -1.8881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557397706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:56 Heat of formation + Delta-G solvation = -25.262087 kcal Electronic energy + Delta-G solvation = -21502.043156 eV Core-core repulsion = 18346.129597 eV Total energy + Delta-G solvation = -3155.913558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.13725 -38.41234 -36.91548 -35.68238 -33.52910 -33.18836 -32.10162 -28.41129 -26.73892 -25.64351 -25.44959 -23.09847 -21.36386 -20.43529 -19.88407 -18.09191 -17.53257 -16.92662 -16.53045 -16.10814 -15.49273 -14.86552 -14.75933 -14.44962 -14.15482 -14.03659 -13.68338 -12.91129 -12.61374 -12.44550 -12.21556 -11.95314 -11.54387 -11.29016 -11.24149 -11.12550 -10.98120 -10.72192 -10.62948 -10.25869 -10.17805 -9.79673 -9.70393 -9.59065 -9.12701 -8.99818 -8.48116 -7.79519 -6.09170 -4.14278 2.47620 2.61596 3.09370 3.27489 3.32586 3.34267 3.62147 3.80351 4.38708 4.59062 4.63600 4.79919 4.86029 5.01570 5.24689 5.26250 5.35758 5.47702 5.65402 5.72717 5.84519 5.99510 6.04260 6.08711 6.12113 6.25702 6.42209 6.82515 6.86200 6.92117 7.03937 7.35895 7.36683 7.46110 7.85700 8.16494 8.24204 8.31349 8.78520 8.94231 9.50426 10.98979 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.007043 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.742307 B = 3974.416523 C = 4296.163689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.168 4.168 3 C 0.126 3.874 4 N -0.582 5.582 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.529 3.471 15 O -0.526 6.526 16 C -0.140 4.140 17 C 0.546 3.454 18 N -0.848 5.848 19 O -0.544 6.544 20 C -0.107 4.107 21 C -0.138 4.138 22 C -0.115 4.115 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.408 0.592 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -5.327 -11.535 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.187 4.187 3 C 0.003 3.997 4 N -0.312 5.312 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.313 3.687 15 O -0.403 6.403 16 C -0.147 4.147 17 C 0.331 3.669 18 N -0.410 5.410 19 O -0.423 6.423 20 C -0.145 4.145 21 C -0.176 4.176 22 C -0.153 4.153 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.129 0.871 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.237 0.763 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.420 -5.640 -11.428 13.195 hybrid contribution -0.025 1.580 0.359 1.620 sum 3.394 -4.060 -11.069 12.269 Atomic orbital electron populations 1.23808 0.95789 1.01768 1.00542 1.23503 0.96361 0.98940 0.99917 1.20809 0.93177 0.95690 0.90053 1.48183 1.06605 1.65056 1.11349 1.19321 0.95370 0.95838 0.76564 1.21331 1.43039 0.92317 0.99866 0.92521 1.24923 0.95060 0.98371 0.95662 1.69920 1.42817 1.35488 1.04932 0.86569 0.78515 0.85126 0.77247 1.20301 1.21163 1.20183 1.19336 0.83069 0.78566 0.87713 1.90691 1.52720 1.53278 1.43581 1.22462 1.01949 0.96068 0.94221 1.19865 0.75877 0.83330 0.87792 1.43891 1.64630 1.08264 1.24253 1.90723 1.45650 1.80405 1.25482 1.22757 0.92928 0.95923 1.02916 1.22825 0.96462 0.96662 1.01622 1.23113 0.98994 0.90635 1.02523 0.88380 0.88623 0.87093 0.89699 0.90080 0.94716 0.93864 0.92613 0.76805 0.76270 0.89477 0.89044 0.89463 0.90801 0.89882 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 14.32 29.02 0.42 -2.14 16 2 C -0.17 -2.62 9.18 -36.03 -0.33 -2.95 16 3 C 0.13 2.22 5.38 -5.20 -0.03 2.19 16 4 N -0.58 -11.98 2.45 -176.43 -0.43 -12.41 16 5 C 0.25 6.28 5.14 -5.19 -0.03 6.26 16 6 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 7 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 10 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 14 C 0.53 10.45 5.83 -10.99 -0.06 10.39 16 15 O -0.53 -12.26 15.52 5.56 0.09 -12.17 16 16 C -0.14 -2.20 0.62 -156.00 -0.10 -2.29 16 17 C 0.55 8.46 4.65 -10.99 -0.05 8.41 16 18 N -0.85 -11.33 8.71 31.22 0.27 -11.05 16 19 O -0.54 -9.39 16.15 5.56 0.09 -9.30 16 20 C -0.11 -1.45 7.06 -25.92 -0.18 -1.64 16 21 C -0.14 -1.76 7.81 -25.92 -0.20 -1.96 16 22 C -0.12 -1.59 6.45 -25.91 -0.17 -1.75 16 23 H 0.10 1.36 7.84 -52.49 -0.41 0.95 16 24 H 0.10 1.15 8.06 -52.48 -0.42 0.72 16 25 H 0.11 1.62 5.35 -52.48 -0.28 1.34 16 26 H 0.08 1.55 7.78 -51.93 -0.40 1.14 16 27 H 0.08 1.37 3.84 -51.93 -0.20 1.17 16 28 H 0.03 0.91 8.07 -51.92 -0.42 0.49 16 29 H 0.04 1.23 7.48 -51.94 -0.39 0.85 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.40 4.48 8.93 -40.82 -0.36 4.12 16 32 H 0.41 5.55 8.38 -40.82 -0.34 5.21 16 33 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.09 1.33 7.35 -51.93 -0.38 0.95 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.16 4.60 -51.93 -0.24 0.92 16 38 H 0.10 1.35 7.38 -51.93 -0.38 0.96 16 LS Contribution 313.80 15.07 4.73 4.73 Total: -1.00 -31.79 313.80 -5.74 -37.53 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.05 Total: 10.19 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.15 Total: 1.48 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.58 Total: -48.69 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.18 Total: -21.47 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.79 -5.74 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557397706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.268 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds