Wall clock time and date at job start Thu Apr 9 2020 13:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00216 * 2 1 4 4 N 1.46497 * 109.47401 * 125.70144 * 3 2 1 5 5 C 1.46502 * 120.00269 * 277.89863 * 4 3 2 6 6 C 1.50707 * 109.47198 * 270.00350 * 5 4 3 7 7 H 1.07995 * 119.99701 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00066 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99941 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00209 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47167 * 59.99834 * 10 8 6 12 12 H 1.48497 * 109.47423 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47269 * 300.00286 * 10 8 6 14 14 C 1.34775 * 120.00046 * 97.90027 * 4 3 2 15 15 O 1.21281 * 120.00053 * 176.04268 * 14 4 3 16 16 C 1.50702 * 120.00109 * 356.04451 * 14 4 3 17 17 C 1.50701 * 112.85138 * 59.86956 * 16 14 4 18 18 N 1.34776 * 119.99363 * 43.82313 * 17 16 14 19 19 O 1.21278 * 119.99979 * 223.54625 * 17 16 14 20 20 C 1.53775 * 113.68992 * 191.14376 * 16 14 4 21 21 C 1.53785 * 87.08487 * 89.12536 * 20 16 14 22 22 C 1.53781 * 87.08105 * 25.43038 * 21 20 16 23 23 H 1.08000 * 119.99829 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99739 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00176 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47007 * 5.69840 * 3 2 1 27 27 H 1.09006 * 109.47263 * 245.70266 * 3 2 1 28 28 H 1.09008 * 109.46657 * 29.99892 * 5 4 3 29 29 H 1.08989 * 109.47337 * 149.99903 * 5 4 3 30 30 H 0.97003 * 120.00108 * 179.97438 * 9 8 6 31 31 H 0.97004 * 119.99693 * 184.73341 * 18 17 16 32 32 H 0.96998 * 120.00777 * 4.72996 * 18 17 16 33 33 H 1.09004 * 113.61412 * 203.67393 * 20 16 14 34 34 H 1.09001 * 113.61750 * 334.57317 * 20 16 14 35 35 H 1.08996 * 113.61207 * 270.88439 * 21 20 16 36 36 H 1.08997 * 113.69254 * 139.99020 * 21 20 16 37 37 H 1.08994 * 113.61916 * 220.02375 * 22 21 20 38 38 H 1.08999 * 113.69056 * 89.12836 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0057 1.3250 1.1216 5 6 2.5403 1.6859 2.4630 6 6 2.6697 3.1750 2.6559 7 1 3.0599 3.7907 1.8591 8 6 2.2898 3.7511 3.8495 9 7 1.8140 3.0012 4.8196 10 14 2.4508 5.5966 4.0888 11 1 1.6284 6.3011 3.0727 12 1 1.9789 5.9625 5.4485 13 1 3.8737 5.9934 3.9358 14 6 4.3008 1.0113 0.9194 15 8 5.0951 1.0971 1.8319 16 6 4.7619 0.5540 -0.4405 17 6 4.5189 1.5805 -1.5166 18 7 4.8025 2.8779 -1.2867 19 8 4.0728 1.2385 -2.5913 20 6 6.1882 -0.0208 -0.4482 21 6 5.5542 -1.3887 -0.1446 22 6 4.2758 -0.8566 -0.8135 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3596 2.1310 0.1020 27 1 2.6114 1.4083 -0.9367 28 1 1.4960 1.3943 2.5759 29 1 3.1445 1.1691 3.2085 30 1 1.5471 3.4065 5.6595 31 1 4.5826 3.5479 -1.9528 32 1 5.2264 3.1417 -0.4551 33 1 6.6736 0.0287 -1.4229 34 1 6.8161 0.3581 0.3582 35 1 5.4385 -1.5895 0.9205 36 1 6.0173 -2.2153 -0.6833 37 1 3.3599 -1.1522 -0.3021 38 1 4.2370 -1.0350 -1.8881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557397706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:10:53 Heat of formation + Delta-G solvation = -47.930037 kcal Electronic energy + Delta-G solvation = -21503.026112 eV Core-core repulsion = 18346.129597 eV Total energy + Delta-G solvation = -3156.896514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.46769 -39.86505 -38.21995 -37.22162 -35.08189 -34.72140 -33.72287 -30.17339 -28.17072 -26.99186 -26.76519 -24.97696 -22.55016 -21.89002 -21.13224 -19.36249 -19.01335 -18.53537 -18.10267 -17.63987 -16.93323 -16.55844 -16.12128 -15.80331 -15.59980 -15.37668 -15.14072 -14.31860 -14.27328 -14.03050 -13.61904 -13.32760 -13.08471 -12.99663 -12.77097 -12.56346 -12.43682 -12.35410 -12.21300 -11.86680 -11.71734 -11.30989 -11.01975 -10.76023 -10.63227 -10.59718 -10.35709 -9.55327 -8.21507 -6.35582 1.25239 1.34945 1.38617 1.41481 1.48564 1.57968 2.21595 2.41614 2.48300 3.08909 3.36910 3.44072 3.47756 3.77611 3.83309 4.01812 4.10575 4.24535 4.39523 4.63747 4.72724 4.82323 4.93358 4.97793 4.99485 5.04289 5.08649 5.20066 5.38579 5.46709 5.67911 5.72806 5.76679 5.88822 6.04979 6.19085 6.59640 6.72743 7.11149 7.21419 7.37728 8.85877 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.007043 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.742307 B = 3974.416523 C = 4296.163689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.191 4.191 3 C 0.129 3.871 4 N -0.585 5.585 5 C 0.266 3.734 6 C -0.539 4.539 7 H 0.058 0.942 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.529 3.471 15 O -0.569 6.569 16 C -0.143 4.143 17 C 0.548 3.452 18 N -0.838 5.838 19 O -0.559 6.559 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.109 4.109 23 H 0.098 0.902 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.021 0.979 29 H 0.002 0.998 30 H 0.266 0.734 31 H 0.413 0.587 32 H 0.408 0.592 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 -5.171 -13.272 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.210 4.210 3 C 0.007 3.993 4 N -0.314 5.314 5 C 0.145 3.855 6 C -0.578 4.578 7 H 0.076 0.924 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.316 3.684 15 O -0.448 6.448 16 C -0.150 4.150 17 C 0.333 3.667 18 N -0.401 5.401 19 O -0.439 6.439 20 C -0.140 4.140 21 C -0.169 4.169 22 C -0.147 4.147 23 H 0.116 0.884 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.039 0.961 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.237 0.763 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.432 -5.473 -13.209 14.704 hybrid contribution -0.065 1.510 0.904 1.761 sum 3.367 -3.963 -12.305 13.359 Atomic orbital electron populations 1.24072 0.95358 1.03064 0.97820 1.23465 0.96959 0.98242 1.02340 1.20886 0.92658 0.96745 0.89036 1.48092 1.07743 1.65094 1.10451 1.18757 0.93666 0.94728 0.78355 1.21625 1.42845 0.93208 1.00121 0.92360 1.25822 0.94582 1.03254 0.95329 1.70047 1.43677 1.37545 1.05429 0.85498 0.78647 0.79312 0.77542 1.18807 1.20731 1.19861 1.19949 0.82136 0.77322 0.89002 1.90664 1.53716 1.54883 1.45545 1.22436 1.03849 0.97236 0.91444 1.19782 0.75808 0.83728 0.87418 1.43831 1.63788 1.08033 1.24440 1.90720 1.46534 1.80687 1.25942 1.22835 0.91484 0.95922 1.03779 1.22787 0.95871 0.97368 1.00829 1.23153 0.99314 0.88898 1.03316 0.88404 0.85995 0.86039 0.90742 0.89146 0.96119 0.97964 0.92471 0.75429 0.76305 0.86933 0.90440 0.91365 0.87534 0.90268 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 14.32 67.78 0.97 -3.40 16 2 C -0.19 -5.77 9.18 25.65 0.24 -5.53 16 3 C 0.13 4.51 5.38 85.63 0.46 4.97 16 4 N -0.58 -24.54 2.45 -830.49 -2.03 -26.57 16 5 C 0.27 13.99 5.14 85.64 0.44 14.43 16 6 C -0.54 -29.93 9.39 25.60 0.24 -29.69 16 7 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 10 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 C 0.53 21.21 5.83 87.66 0.51 21.72 16 15 O -0.57 -27.40 15.52 -3.03 -0.05 -27.45 16 16 C -0.14 -4.34 0.62 -53.15 -0.03 -4.37 16 17 C 0.55 16.13 4.65 87.66 0.41 16.54 16 18 N -0.84 -21.35 8.71 -173.53 -1.51 -22.86 16 19 O -0.56 -18.10 16.15 -3.02 -0.05 -18.15 16 20 C -0.10 -2.61 7.06 31.12 0.22 -2.39 16 21 C -0.13 -3.10 7.81 31.12 0.24 -2.85 16 22 C -0.11 -2.81 6.45 31.12 0.20 -2.61 16 23 H 0.10 2.58 7.84 -2.91 -0.02 2.56 16 24 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 25 H 0.12 3.39 5.35 -2.91 -0.02 3.38 16 26 H 0.07 2.72 7.78 -2.39 -0.02 2.70 16 27 H 0.09 2.98 3.84 -2.38 -0.01 2.97 16 28 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 29 H 0.00 0.14 7.48 -2.39 -0.02 0.12 16 30 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.41 8.56 8.93 -92.71 -0.83 7.73 16 32 H 0.41 10.80 8.38 -92.71 -0.78 10.02 16 33 H 0.11 2.32 8.09 -2.38 -0.02 2.30 16 34 H 0.08 2.22 7.35 -2.39 -0.02 2.21 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.11 4.60 -2.39 -0.01 2.10 16 38 H 0.12 2.72 7.38 -2.39 -0.02 2.70 16 Total: -1.00 -69.20 313.80 2.52 -66.68 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.51 Total: 29.66 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 4.36 Total: 7.79 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.26 Total: -104.14 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.10 Total: -45.60 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -69.20 2.52 -66.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557397706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.749 kcal (2) G-P(sol) polarization free energy of solvation -69.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds