Wall clock time and date at job start Thu Apr 9 2020 13:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00018 * 2 1 4 4 N 1.46498 * 109.47144 * 125.00357 * 3 2 1 5 5 C 1.46500 * 119.99572 * 269.99627 * 4 3 2 6 6 C 1.50705 * 109.47239 * 269.99791 * 5 4 3 7 7 H 1.07999 * 119.99773 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00109 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99900 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00032 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46785 * 89.99830 * 10 8 6 12 12 H 1.48493 * 109.46958 * 209.99581 * 10 8 6 13 13 H 1.48491 * 109.46912 * 329.99781 * 10 8 6 14 14 C 1.34777 * 120.00677 * 89.99966 * 4 3 2 15 15 O 1.21282 * 120.00341 * 180.02562 * 14 4 3 16 16 C 1.50699 * 119.99618 * 359.97438 * 14 4 3 17 17 N 1.46496 * 109.47313 * 180.02562 * 16 14 4 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 16 21 21 C 1.53001 * 117.49756 * 248.61806 * 20 18 17 22 22 C 1.52999 * 59.99986 * 252.51526 * 21 20 18 23 23 H 1.08002 * 120.00340 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99945 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47432 * 4.99449 * 3 2 1 27 27 H 1.09001 * 109.47035 * 244.99910 * 3 2 1 28 28 H 1.09000 * 109.47439 * 29.99789 * 5 4 3 29 29 H 1.09000 * 109.47352 * 150.00058 * 5 4 3 30 30 H 0.96999 * 119.99522 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47247 * 60.00376 * 16 14 4 32 32 H 1.09004 * 109.47103 * 300.00254 * 16 14 4 33 33 H 0.96999 * 119.99694 * 359.97438 * 17 16 14 34 34 H 1.08996 * 115.55128 * 34.33271 * 20 18 17 35 35 H 1.09004 * 117.49834 * 0.02562 * 21 20 18 36 36 H 1.08997 * 117.49999 * 145.02096 * 21 20 18 37 37 H 1.09004 * 117.50109 * 252.51157 * 22 21 20 38 38 H 1.08998 * 117.52032 * 107.48340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3034 3.8370 1.6364 8 6 2.5185 4.0668 3.6081 9 7 2.7672 5.3574 3.6563 10 14 1.7238 3.2135 5.0675 11 1 2.7798 2.7234 5.9894 12 1 0.8470 4.1736 5.7849 13 1 0.9131 2.0655 4.5883 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9192 16 6 4.6969 0.3173 -0.3479 17 7 6.0912 -0.1218 -0.2513 18 6 6.7073 -0.6505 -1.3271 19 8 6.1074 -0.7632 -2.3751 20 6 8.1418 -1.1016 -1.2278 21 6 9.1900 -0.2990 -2.0012 22 6 8.7848 -1.6933 -2.4837 23 1 -0.5401 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4887 1.6967 2.5459 29 1 3.0989 1.3604 3.2259 30 1 2.5383 5.8660 4.4499 31 1 4.6120 1.0936 -1.1084 32 1 4.0677 -0.5297 -0.6216 33 1 6.5711 -0.0313 0.5867 34 1 8.4373 -1.5208 -0.2660 35 1 8.8420 0.5555 -2.5816 36 1 10.1753 -0.1898 -1.5482 37 1 9.5036 -2.5014 -2.3481 38 1 8.1702 -1.7566 -3.3817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561016010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:02 Heat of formation + Delta-G solvation = -21.416573 kcal Electronic energy + Delta-G solvation = -19924.411913 eV Core-core repulsion = 16768.665108 eV Total energy + Delta-G solvation = -3155.746804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.15841 -39.14515 -36.35654 -35.93226 -34.34646 -33.21808 -32.21307 -29.37178 -27.41680 -25.62132 -24.01820 -22.61218 -22.08960 -20.21935 -20.11406 -18.70332 -17.64556 -16.98368 -16.50127 -16.12315 -15.58474 -15.27967 -14.99419 -14.69953 -14.34406 -14.05353 -13.71815 -13.21930 -12.79610 -12.57195 -12.46579 -12.25473 -11.81905 -11.75012 -11.68878 -11.22861 -11.00992 -10.81172 -10.69349 -10.58754 -10.21291 -9.93757 -9.63609 -9.33967 -9.27537 -9.10047 -8.64091 -7.90856 -6.13862 -4.13512 2.31250 2.44760 2.98934 3.09667 3.25667 3.31820 3.33460 3.69765 3.82368 4.34868 4.56288 4.65035 4.71259 4.78123 5.00147 5.11461 5.19537 5.26997 5.39011 5.40770 5.45804 5.57964 5.60551 5.76609 5.91066 5.93114 6.06969 6.32237 6.61047 6.67945 6.79098 6.85232 7.19317 7.53359 7.54339 8.01745 8.22223 8.38692 8.70255 8.89201 9.45659 10.99311 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.004658 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.375295 B = 6010.315186 C = 6908.020393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.132 3.868 4 N -0.581 5.581 5 C 0.217 3.783 6 C -0.532 4.532 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.503 3.497 15 O -0.538 6.538 16 C 0.099 3.901 17 N -0.710 5.710 18 C 0.544 3.456 19 O -0.548 6.548 20 C -0.193 4.193 21 C -0.152 4.152 22 C -0.148 4.148 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.413 0.587 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 -13.203 -9.892 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.008 3.992 4 N -0.312 5.312 5 C 0.097 3.903 6 C -0.570 4.570 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.289 3.711 15 O -0.415 6.415 16 C -0.028 4.028 17 N -0.364 5.364 18 C 0.330 3.670 19 O -0.426 6.426 20 C -0.214 4.214 21 C -0.190 4.190 22 C -0.186 4.186 23 H 0.114 0.886 24 H 0.119 0.881 25 H 0.124 0.876 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.738 -13.065 -9.976 17.108 hybrid contribution -0.350 -0.200 1.335 1.395 sum 4.387 -13.266 -8.641 16.428 Atomic orbital electron populations 1.23855 0.95807 1.01936 1.00129 1.23408 0.96483 0.98907 1.00282 1.20701 0.93280 0.95714 0.89487 1.47846 1.10334 1.59631 1.13354 1.19709 0.95103 0.95238 0.80251 1.21305 1.41479 0.91022 1.03225 0.90672 1.24844 0.95196 0.94713 0.98122 1.69896 1.47583 1.06595 1.29303 0.86861 0.79896 0.79704 0.83317 1.19888 1.20998 1.19013 1.20216 0.82703 0.78800 0.89351 1.90663 1.52400 1.56812 1.41651 1.21187 0.83667 1.01009 0.96931 1.45683 1.12923 1.62779 1.14999 1.19627 0.87418 0.76818 0.83123 1.90680 1.66829 1.56020 1.29077 1.22163 0.91794 1.08138 0.99352 1.22947 0.98011 0.95842 1.02154 1.22947 1.02110 0.96528 0.96979 0.88630 0.88122 0.87635 0.88795 0.90145 0.94921 0.94455 0.92488 0.88700 0.88877 0.74847 0.85692 0.88157 0.87713 0.87983 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.27 9.74 -36.03 -0.35 -2.62 16 3 C 0.13 2.02 5.65 -5.20 -0.03 1.99 16 4 N -0.58 -11.45 2.44 -176.43 -0.43 -11.88 16 5 C 0.22 5.15 4.23 -5.19 -0.02 5.13 16 6 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 7 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 10 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 14 C 0.50 9.71 7.74 -10.99 -0.09 9.63 16 15 O -0.54 -12.22 15.25 5.56 0.08 -12.13 16 16 C 0.10 1.51 4.71 -5.20 -0.02 1.49 16 17 N -0.71 -10.26 5.53 -61.47 -0.34 -10.60 16 18 C 0.54 7.61 7.61 -10.98 -0.08 7.53 16 19 O -0.55 -9.22 16.26 5.56 0.09 -9.13 16 20 C -0.19 -2.02 6.19 -91.77 -0.57 -2.58 16 21 C -0.15 -1.36 10.23 -26.73 -0.27 -1.63 16 22 C -0.15 -1.34 10.04 -26.73 -0.27 -1.61 16 23 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 24 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 25 H 0.11 1.32 7.83 -52.49 -0.41 0.91 16 26 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 27 H 0.08 1.06 6.44 -51.93 -0.33 0.73 16 28 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.10 1.40 7.40 -51.93 -0.38 1.02 16 32 H 0.09 1.28 7.77 -51.93 -0.40 0.88 16 33 H 0.41 5.88 7.44 -40.82 -0.30 5.58 16 34 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -33.84 328.61 -6.75 -40.58 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.48 Total: 5.76 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.73 Total: 2.35 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.00 Total: -48.91 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.18 Total: -21.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.84 -6.75 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561016010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.168 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds