Wall clock time and date at job start Thu Apr 9 2020 13:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00018 * 2 1 4 4 N 1.46498 * 109.47144 * 125.00357 * 3 2 1 5 5 C 1.46500 * 119.99572 * 269.99627 * 4 3 2 6 6 C 1.50705 * 109.47239 * 269.99791 * 5 4 3 7 7 H 1.07999 * 119.99773 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00109 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99900 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00032 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46785 * 89.99830 * 10 8 6 12 12 H 1.48493 * 109.46958 * 209.99581 * 10 8 6 13 13 H 1.48491 * 109.46912 * 329.99781 * 10 8 6 14 14 C 1.34777 * 120.00677 * 89.99966 * 4 3 2 15 15 O 1.21282 * 120.00341 * 180.02562 * 14 4 3 16 16 C 1.50699 * 119.99618 * 359.97438 * 14 4 3 17 17 N 1.46496 * 109.47313 * 180.02562 * 16 14 4 18 18 C 1.34777 * 120.00258 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 16 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 16 21 21 C 1.53001 * 117.49756 * 248.61806 * 20 18 17 22 22 C 1.52999 * 59.99986 * 252.51526 * 21 20 18 23 23 H 1.08002 * 120.00340 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99945 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47432 * 4.99449 * 3 2 1 27 27 H 1.09001 * 109.47035 * 244.99910 * 3 2 1 28 28 H 1.09000 * 109.47439 * 29.99789 * 5 4 3 29 29 H 1.09000 * 109.47352 * 150.00058 * 5 4 3 30 30 H 0.96999 * 119.99522 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47247 * 60.00376 * 16 14 4 32 32 H 1.09004 * 109.47103 * 300.00254 * 16 14 4 33 33 H 0.96999 * 119.99694 * 359.97438 * 17 16 14 34 34 H 1.08996 * 115.55128 * 34.33271 * 20 18 17 35 35 H 1.09004 * 117.49834 * 0.02562 * 21 20 18 36 36 H 1.08997 * 117.49999 * 145.02096 * 21 20 18 37 37 H 1.09004 * 117.50109 * 252.51157 * 22 21 20 38 38 H 1.08998 * 117.52032 * 107.48340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3034 3.8370 1.6364 8 6 2.5185 4.0668 3.6081 9 7 2.7672 5.3574 3.6563 10 14 1.7238 3.2135 5.0675 11 1 2.7798 2.7234 5.9894 12 1 0.8470 4.1736 5.7849 13 1 0.9131 2.0655 4.5883 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9192 16 6 4.6969 0.3173 -0.3479 17 7 6.0912 -0.1218 -0.2513 18 6 6.7073 -0.6505 -1.3271 19 8 6.1074 -0.7632 -2.3751 20 6 8.1418 -1.1016 -1.2278 21 6 9.1900 -0.2990 -2.0012 22 6 8.7848 -1.6933 -2.4837 23 1 -0.5401 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.4887 1.6967 2.5459 29 1 3.0989 1.3604 3.2259 30 1 2.5383 5.8660 4.4499 31 1 4.6120 1.0936 -1.1084 32 1 4.0677 -0.5297 -0.6216 33 1 6.5711 -0.0313 0.5867 34 1 8.4373 -1.5208 -0.2660 35 1 8.8420 0.5555 -2.5816 36 1 10.1753 -0.1898 -1.5482 37 1 9.5036 -2.5014 -2.3481 38 1 8.1702 -1.7566 -3.3817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561016010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:00 Heat of formation + Delta-G solvation = -45.092226 kcal Electronic energy + Delta-G solvation = -19925.438566 eV Core-core repulsion = 16768.665108 eV Total energy + Delta-G solvation = -3156.773458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.41751 -40.49554 -37.49192 -37.10902 -35.61849 -35.00152 -33.81076 -31.04204 -28.90516 -26.96883 -25.25579 -23.80973 -23.28177 -21.33164 -21.23938 -20.06817 -19.11400 -18.74280 -17.87943 -17.41772 -16.91953 -16.67880 -16.11838 -16.01871 -15.80442 -15.16324 -15.14217 -14.56801 -14.40142 -14.09129 -13.72931 -13.57190 -13.48277 -13.09964 -12.92344 -12.52031 -12.42035 -12.28212 -11.96542 -11.75184 -11.54604 -11.46578 -11.04907 -10.90536 -10.83716 -10.37262 -10.27794 -9.55978 -8.34713 -6.40468 1.26347 1.34362 1.36581 1.40069 1.45445 1.56001 1.85804 2.30360 2.43554 2.93119 2.99698 3.41027 3.69340 3.85731 4.00097 4.02741 4.13837 4.18370 4.23362 4.30866 4.42542 4.74171 4.75606 4.80709 4.88806 4.91981 5.02737 5.04952 5.19151 5.25501 5.40724 5.45371 5.70319 5.88019 6.19900 6.40907 6.49993 6.61440 7.08399 7.11803 7.26467 8.82048 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.004658 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.375295 B = 6010.315186 C = 6908.020393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.128 3.872 4 N -0.587 5.587 5 C 0.228 3.772 6 C -0.538 4.538 7 H 0.030 0.970 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.946 3.054 11 H -0.274 1.274 12 H -0.276 1.276 13 H -0.239 1.239 14 C 0.499 3.501 15 O -0.578 6.578 16 C 0.112 3.888 17 N -0.712 5.712 18 C 0.541 3.459 19 O -0.580 6.580 20 C -0.206 4.206 21 C -0.146 4.146 22 C -0.141 4.141 23 H 0.119 0.881 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.269 0.731 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.415 0.585 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -15.475 -9.926 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.006 3.994 4 N -0.317 5.317 5 C 0.106 3.894 6 C -0.577 4.577 7 H 0.049 0.951 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.769 3.231 11 H -0.200 1.200 12 H -0.201 1.201 13 H -0.162 1.162 14 C 0.287 3.713 15 O -0.459 6.459 16 C -0.016 4.016 17 N -0.366 5.366 18 C 0.330 3.670 19 O -0.460 6.460 20 C -0.227 4.227 21 C -0.183 4.183 22 C -0.178 4.178 23 H 0.137 0.863 24 H 0.120 0.880 25 H 0.134 0.866 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.253 0.747 34 H 0.165 0.835 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.337 -15.356 -10.055 18.860 hybrid contribution -0.218 0.575 1.244 1.387 sum 4.119 -14.780 -8.811 17.694 Atomic orbital electron populations 1.24095 0.95399 1.03122 0.97573 1.23266 0.96868 0.97887 1.02526 1.20914 0.92865 0.96958 0.88664 1.47893 1.11408 1.59176 1.13226 1.19348 0.95691 0.92190 0.82183 1.21536 1.40819 0.93389 1.01936 0.95131 1.25815 0.95838 0.95310 1.01474 1.70048 1.49277 1.08511 1.30547 0.85742 0.79119 0.79370 0.78914 1.19982 1.20129 1.16169 1.20859 0.82069 0.78029 0.90322 1.90632 1.53433 1.58478 1.43355 1.21085 0.84652 1.01669 0.94152 1.45768 1.12593 1.62834 1.15369 1.20257 0.88679 0.75868 0.82217 1.90660 1.67911 1.57379 1.30093 1.22254 0.89689 1.09608 1.01145 1.23064 0.98478 0.95404 1.01378 1.23037 1.01880 0.97476 0.95408 0.86335 0.88036 0.86613 0.89801 0.88244 0.93246 0.95828 0.92229 0.88186 0.86864 0.74701 0.83531 0.89469 0.85144 0.85170 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 14.32 67.78 0.97 -2.48 16 2 C -0.19 -4.52 9.74 25.65 0.25 -4.27 16 3 C 0.13 3.81 5.65 85.63 0.48 4.30 16 4 N -0.59 -23.05 2.44 -830.50 -2.03 -25.08 16 5 C 0.23 10.77 4.23 85.63 0.36 11.13 16 6 C -0.54 -31.00 9.94 25.60 0.25 -30.75 16 7 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 8 C 0.01 0.81 5.47 84.65 0.46 1.27 16 9 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 10 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 14 C 0.50 19.31 7.74 87.66 0.68 19.99 16 15 O -0.58 -26.72 15.25 -3.04 -0.05 -26.77 16 16 C 0.11 3.33 4.71 85.63 0.40 3.73 16 17 N -0.71 -20.17 5.53 -466.79 -2.58 -22.75 16 18 C 0.54 14.71 7.61 87.66 0.67 15.38 16 19 O -0.58 -19.20 16.26 -3.03 -0.05 -19.25 16 20 C -0.21 -3.94 6.19 -11.54 -0.07 -4.01 16 21 C -0.15 -2.33 10.23 30.59 0.31 -2.02 16 22 C -0.14 -2.25 10.04 30.59 0.31 -1.95 16 23 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 24 H 0.10 2.12 7.84 -2.91 -0.02 2.09 16 25 H 0.12 2.59 7.83 -2.91 -0.02 2.56 16 26 H 0.08 2.65 7.72 -2.39 -0.02 2.63 16 27 H 0.10 2.53 6.44 -2.39 -0.02 2.51 16 28 H 0.05 2.17 7.13 -2.39 -0.02 2.16 16 29 H 0.02 1.19 6.85 -2.39 -0.02 1.17 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.10 2.90 7.40 -2.39 -0.02 2.88 16 32 H 0.11 2.94 7.77 -2.38 -0.02 2.92 16 33 H 0.41 11.70 7.44 -92.71 -0.69 11.01 16 34 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.09 1.79 7.67 -2.39 -0.02 1.77 16 Total: -1.00 -75.37 328.61 2.88 -72.49 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.31 Total: 24.22 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.08 Total: 10.33 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -4.31 Total: -106.42 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.10 Total: -46.02 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -75.37 2.88 -72.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561016010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.398 kcal (2) G-P(sol) polarization free energy of solvation -75.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds