Wall clock time and date at job start Thu Apr 9 2020 13:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46502 * 109.46804 * 125.27541 * 3 2 1 5 5 C 1.46504 * 119.99747 * 90.00225 * 4 3 2 6 6 C 1.50702 * 109.47011 * 90.00161 * 5 4 3 7 7 H 1.08002 * 120.00293 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99638 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00375 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99507 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47063 * 90.00039 * 10 8 6 12 12 H 1.48501 * 109.46838 * 209.99519 * 10 8 6 13 13 H 1.48491 * 109.47377 * 329.99702 * 10 8 6 14 14 C 1.34773 * 120.00073 * 270.00056 * 4 3 2 15 15 O 1.21286 * 120.00000 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00285 * 0.02562 * 14 4 3 17 17 H 1.08995 * 112.84942 * 51.68885 * 16 14 4 18 18 C 1.53788 * 113.61287 * 280.49406 * 16 14 4 19 19 C 1.53776 * 87.08043 * 220.01691 * 18 16 14 20 20 C 1.53777 * 113.61682 * 182.99613 * 16 14 4 21 21 H 1.09000 * 113.61709 * 25.43322 * 20 16 14 22 22 C 1.50693 * 113.61729 * 254.52764 * 20 16 14 23 23 N 1.34781 * 120.00348 * 179.97438 * 22 20 16 24 24 O 1.21285 * 119.99950 * 0.02562 * 22 20 16 25 25 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 26 26 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 27 27 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 28 28 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 29 29 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 30 30 H 1.09004 * 109.46847 * 209.99803 * 5 4 3 31 31 H 1.09000 * 109.47270 * 329.99765 * 5 4 3 32 32 H 0.97001 * 120.00320 * 180.02562 * 9 8 6 33 33 H 1.08996 * 113.61417 * 334.56455 * 18 16 14 34 34 H 1.09002 * 113.61289 * 105.46611 * 18 16 14 35 35 H 1.09003 * 113.61398 * 139.98334 * 19 18 16 36 36 H 1.09004 * 113.61455 * 270.88307 * 19 18 16 37 37 H 0.96994 * 119.99703 * 0.02562 * 23 22 20 38 38 H 0.97000 * 119.99951 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 4.3629 0.8233 0.9587 6 6 5.2636 1.9468 0.5142 7 1 4.8600 2.9384 0.3714 8 6 6.6029 1.7086 0.2888 9 7 7.0943 0.5011 0.4622 10 14 7.7192 3.1011 -0.2628 11 1 8.2945 3.7758 0.9285 12 1 8.8169 2.5535 -1.0997 13 1 6.9338 4.0807 -1.0555 14 6 2.6032 1.8166 2.3204 15 8 3.3774 1.8369 3.2538 16 6 1.1994 2.3364 2.4944 17 1 0.4413 1.6269 2.1630 18 6 0.9961 3.7576 1.9431 19 6 0.1270 4.0292 3.1823 20 6 0.9284 2.9235 3.8895 21 1 1.8247 3.2874 4.3919 22 6 0.0854 2.0334 4.7658 23 7 -0.2302 2.4229 6.0169 24 8 -0.3083 0.9660 4.3455 25 1 -0.5401 0.9353 0.0045 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 -0.0046 28 1 2.6173 1.4049 -0.9334 29 1 1.3589 2.1314 0.0945 30 1 4.7220 0.4232 1.9069 31 1 4.3675 0.0346 0.2064 32 1 8.0365 0.3336 0.3040 33 1 1.9109 4.3494 1.9132 34 1 0.4410 3.7870 1.0054 35 1 0.2764 5.0198 3.6119 36 1 -0.9253 3.7828 3.0401 37 1 0.0850 3.2763 6.3531 38 1 -0.7731 1.8500 6.5808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563401754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:06 Heat of formation + Delta-G solvation = -38.303402 kcal Electronic energy + Delta-G solvation = -20786.871106 eV Core-core repulsion = 17630.392034 eV Total energy + Delta-G solvation = -3156.479072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59181 -38.70930 -36.77841 -35.55685 -33.60367 -33.17675 -31.97035 -28.12957 -26.74183 -26.35039 -25.18175 -22.68049 -21.39614 -19.89906 -19.45855 -18.41903 -17.70822 -16.88699 -16.39208 -16.22694 -15.47967 -14.83334 -14.56543 -14.37398 -14.28890 -13.87416 -13.47695 -12.94394 -12.80313 -12.43465 -12.28145 -11.77706 -11.65732 -11.32376 -11.16930 -11.06333 -10.82625 -10.75593 -10.55433 -10.46806 -10.13331 -9.72060 -9.69478 -9.61517 -9.18702 -8.73984 -8.41003 -7.62178 -6.01636 -4.06431 2.51617 2.68712 3.32003 3.37440 3.39157 3.46488 3.53423 4.08485 4.45323 4.47301 4.57174 4.77699 4.87614 5.24039 5.26716 5.31363 5.39210 5.45588 5.64092 5.73426 5.77003 5.77359 5.87680 6.03989 6.11942 6.25505 6.42013 6.75883 6.86688 6.97117 7.13744 7.31640 7.49675 7.59505 7.94894 8.26637 8.30113 8.48389 8.93241 9.15183 9.58509 11.06457 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.005792 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.250905 B = 4832.795206 C = 5364.892745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.135 3.865 4 N -0.591 5.591 5 C 0.245 3.755 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.520 3.480 15 O -0.544 6.544 16 C -0.115 4.115 17 H 0.122 0.878 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.120 4.120 21 H 0.127 0.873 22 C 0.531 3.469 23 N -0.857 5.857 24 O -0.540 6.540 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.401 0.599 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.400 6.683 4.045 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.178 4.178 3 C 0.011 3.989 4 N -0.321 5.321 5 C 0.125 3.875 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.306 3.694 15 O -0.421 6.421 16 C -0.137 4.137 17 H 0.140 0.860 18 C -0.162 4.162 19 C -0.159 4.159 20 C -0.141 4.141 21 H 0.145 0.855 22 C 0.316 3.684 23 N -0.420 5.420 24 O -0.417 6.417 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.229 0.771 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.931 5.920 4.058 17.473 hybrid contribution 0.673 0.708 0.121 0.985 sum -15.258 6.629 4.179 17.152 Atomic orbital electron populations 1.23717 0.95684 1.01460 1.02350 1.23525 0.96106 0.99897 0.98242 1.20617 0.92235 0.94230 0.91780 1.48139 1.14268 1.60676 1.09014 1.19296 0.75440 0.94564 0.98155 1.21429 0.93497 0.95845 1.45542 0.92447 1.24939 0.97907 0.95735 0.95548 1.69937 1.14068 1.20168 1.49206 0.86510 0.80271 0.82121 0.78567 1.20616 1.21183 1.19927 1.20056 0.88210 0.78150 0.82965 1.90639 1.55178 1.56313 1.40019 1.22717 0.97443 0.98020 0.95501 0.86042 1.22838 1.00643 0.94970 0.97780 1.22805 0.98821 0.97755 0.96542 1.22689 0.99790 0.96741 0.94900 0.85511 1.20525 0.79400 0.86495 0.81986 1.43855 1.57411 1.24894 1.15861 1.90728 1.54021 1.23269 1.73640 0.88827 0.88755 0.87197 0.89125 0.90930 0.93937 0.95009 0.92753 0.88948 0.90290 0.90242 0.89654 0.77117 0.77235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 13.65 29.02 0.40 -2.17 16 2 C -0.16 -2.48 9.67 -36.02 -0.35 -2.83 16 3 C 0.14 2.31 5.58 -5.19 -0.03 2.28 16 4 N -0.59 -12.91 2.44 -176.43 -0.43 -13.34 16 5 C 0.24 6.53 5.16 -5.19 -0.03 6.50 16 6 C -0.52 -14.89 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.52 11.24 7.20 -10.99 -0.08 11.16 16 15 O -0.54 -13.99 15.50 5.55 0.09 -13.91 16 16 C -0.12 -1.85 2.14 -90.96 -0.20 -2.04 16 17 H 0.12 1.97 6.41 -51.93 -0.33 1.64 16 18 C -0.12 -1.54 6.78 -25.92 -0.18 -1.72 16 19 C -0.12 -1.23 7.63 -25.92 -0.20 -1.43 16 20 C -0.12 -1.65 3.45 -90.96 -0.31 -1.96 16 21 H 0.13 1.84 7.47 -51.93 -0.39 1.46 16 22 C 0.53 7.52 7.63 -10.99 -0.08 7.44 16 23 N -0.86 -8.03 8.87 31.22 0.28 -7.75 16 24 O -0.54 -9.91 16.74 5.55 0.09 -9.82 16 25 H 0.09 1.09 7.84 -52.49 -0.41 0.67 16 26 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 29 H 0.07 1.04 5.20 -51.93 -0.27 0.77 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 34 H 0.08 0.82 7.54 -51.93 -0.39 0.43 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.40 2.53 8.83 -40.82 -0.36 2.17 16 38 H 0.40 3.22 8.93 -40.82 -0.36 2.85 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -35.94 323.79 -6.25 -42.19 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.40 Total: 5.37 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.47 Total: 1.67 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.58 Total: -47.19 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.18 Total: -23.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.94 -6.25 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563401754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.888 kcal (2) G-P(sol) polarization free energy of solvation -35.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds