Wall clock time and date at job start Thu Apr 9 2020 13:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46502 * 109.46804 * 125.27541 * 3 2 1 5 5 C 1.46504 * 119.99747 * 90.00225 * 4 3 2 6 6 C 1.50702 * 109.47011 * 90.00161 * 5 4 3 7 7 H 1.08002 * 120.00293 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99638 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00375 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99507 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47063 * 90.00039 * 10 8 6 12 12 H 1.48501 * 109.46838 * 209.99519 * 10 8 6 13 13 H 1.48491 * 109.47377 * 329.99702 * 10 8 6 14 14 C 1.34773 * 120.00073 * 270.00056 * 4 3 2 15 15 O 1.21286 * 120.00000 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00285 * 0.02562 * 14 4 3 17 17 H 1.08995 * 112.84942 * 51.68885 * 16 14 4 18 18 C 1.53788 * 113.61287 * 280.49406 * 16 14 4 19 19 C 1.53776 * 87.08043 * 220.01691 * 18 16 14 20 20 C 1.53777 * 113.61682 * 182.99613 * 16 14 4 21 21 H 1.09000 * 113.61709 * 25.43322 * 20 16 14 22 22 C 1.50693 * 113.61729 * 254.52764 * 20 16 14 23 23 N 1.34781 * 120.00348 * 179.97438 * 22 20 16 24 24 O 1.21285 * 119.99950 * 0.02562 * 22 20 16 25 25 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 26 26 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 27 27 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 28 28 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 29 29 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 30 30 H 1.09004 * 109.46847 * 209.99803 * 5 4 3 31 31 H 1.09000 * 109.47270 * 329.99765 * 5 4 3 32 32 H 0.97001 * 120.00320 * 180.02562 * 9 8 6 33 33 H 1.08996 * 113.61417 * 334.56455 * 18 16 14 34 34 H 1.09002 * 113.61289 * 105.46611 * 18 16 14 35 35 H 1.09003 * 113.61398 * 139.98334 * 19 18 16 36 36 H 1.09004 * 113.61455 * 270.88307 * 19 18 16 37 37 H 0.96994 * 119.99703 * 0.02562 * 23 22 20 38 38 H 0.97000 * 119.99951 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 4.3629 0.8233 0.9587 6 6 5.2636 1.9468 0.5142 7 1 4.8600 2.9384 0.3714 8 6 6.6029 1.7086 0.2888 9 7 7.0943 0.5011 0.4622 10 14 7.7192 3.1011 -0.2628 11 1 8.2945 3.7758 0.9285 12 1 8.8169 2.5535 -1.0997 13 1 6.9338 4.0807 -1.0555 14 6 2.6032 1.8166 2.3204 15 8 3.3774 1.8369 3.2538 16 6 1.1994 2.3364 2.4944 17 1 0.4413 1.6269 2.1630 18 6 0.9961 3.7576 1.9431 19 6 0.1270 4.0292 3.1823 20 6 0.9284 2.9235 3.8895 21 1 1.8247 3.2874 4.3919 22 6 0.0854 2.0334 4.7658 23 7 -0.2302 2.4229 6.0169 24 8 -0.3083 0.9660 4.3455 25 1 -0.5401 0.9353 0.0045 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 -0.0046 28 1 2.6173 1.4049 -0.9334 29 1 1.3589 2.1314 0.0945 30 1 4.7220 0.4232 1.9069 31 1 4.3675 0.0346 0.2064 32 1 8.0365 0.3336 0.3040 33 1 1.9109 4.3494 1.9132 34 1 0.4410 3.7870 1.0054 35 1 0.2764 5.0198 3.6119 36 1 -0.9253 3.7828 3.0401 37 1 0.0850 3.2763 6.3531 38 1 -0.7731 1.8500 6.5808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563401754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:06 Heat of formation + Delta-G solvation = -65.646773 kcal Electronic energy + Delta-G solvation = -20788.056804 eV Core-core repulsion = 17630.392034 eV Total energy + Delta-G solvation = -3157.664770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83965 -40.13377 -38.01146 -37.18506 -35.13176 -34.57956 -33.66875 -30.00103 -27.83216 -27.70372 -26.74525 -24.58217 -22.42823 -21.19109 -20.61956 -19.85403 -18.81291 -18.58050 -18.07767 -17.46499 -17.15267 -16.46058 -15.99304 -15.64957 -15.59299 -15.34305 -14.88157 -14.34311 -14.21945 -13.86297 -13.71999 -13.51219 -13.05379 -12.93488 -12.74797 -12.49180 -12.40239 -12.23422 -12.13699 -11.96897 -11.68528 -11.46293 -10.83195 -10.65487 -10.64544 -10.55578 -10.25762 -9.46192 -8.21823 -6.37432 1.31953 1.37441 1.40581 1.50755 1.61634 1.82354 2.33254 2.46589 2.72410 3.07626 3.35021 3.56621 3.73828 3.77299 4.04762 4.08979 4.17790 4.35766 4.53398 4.68618 4.71040 4.80272 4.88667 4.97942 5.02416 5.04653 5.09600 5.21824 5.41176 5.56818 5.70261 5.81450 5.83993 5.92294 6.05584 6.46821 6.69666 6.79496 7.27845 7.36681 7.47433 8.85852 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.005792 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.250905 B = 4832.795206 C = 5364.892745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.194 4.194 3 C 0.136 3.864 4 N -0.597 5.597 5 C 0.260 3.740 6 C -0.539 4.539 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.277 1.277 13 H -0.258 1.258 14 C 0.508 3.492 15 O -0.599 6.599 16 C -0.119 4.119 17 H 0.125 0.875 18 C -0.120 4.120 19 C -0.093 4.093 20 C -0.126 4.126 21 H 0.115 0.885 22 C 0.527 3.473 23 N -0.833 5.833 24 O -0.590 6.590 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.107 0.893 30 H -0.009 1.009 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.418 0.582 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.786 9.431 3.574 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.213 4.213 3 C 0.014 3.986 4 N -0.326 5.326 5 C 0.139 3.861 6 C -0.577 4.577 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.796 3.204 11 H -0.205 1.205 12 H -0.202 1.202 13 H -0.182 1.182 14 C 0.297 3.703 15 O -0.481 6.481 16 C -0.140 4.140 17 H 0.143 0.857 18 C -0.157 4.157 19 C -0.131 4.131 20 C -0.148 4.148 21 H 0.133 0.867 22 C 0.312 3.688 23 N -0.396 5.396 24 O -0.470 6.470 25 H 0.139 0.861 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.009 0.991 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.249 0.751 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -18.368 8.706 3.597 20.642 hybrid contribution 1.361 -0.222 0.333 1.419 sum -17.006 8.484 3.930 19.407 Atomic orbital electron populations 1.24023 0.94510 1.03459 0.97574 1.23276 0.97091 0.98352 1.02617 1.20827 0.91830 0.96392 0.89532 1.48174 1.13201 1.60234 1.10983 1.18732 0.78506 0.94117 0.94756 1.21688 0.94301 0.96049 1.45701 0.92302 1.25937 0.99581 0.98544 0.95346 1.70077 1.14641 1.22507 1.49969 0.85349 0.78100 0.78747 0.78217 1.20524 1.20177 1.18150 1.21184 0.90294 0.76989 0.81799 1.90592 1.57404 1.58455 1.41678 1.22817 0.92850 0.99896 0.98451 0.85747 1.22891 1.01047 0.91463 1.00314 1.22776 0.98759 0.97759 0.93774 1.22756 1.00189 0.97937 0.93908 0.86739 1.20642 0.79163 0.85838 0.83152 1.43635 1.56126 1.25565 1.14307 1.90705 1.56257 1.25133 1.74920 0.86102 0.87281 0.89378 0.90069 0.87465 0.99068 0.96447 0.92455 0.90257 0.87398 0.87150 0.87679 0.75073 0.76172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 13.65 67.79 0.93 -2.85 16 2 C -0.19 -6.06 9.67 25.65 0.25 -5.82 16 3 C 0.14 4.65 5.58 85.63 0.48 5.13 16 4 N -0.60 -27.21 2.44 -830.48 -2.03 -29.23 16 5 C 0.26 14.86 5.16 85.63 0.44 15.30 16 6 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 7 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 10 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 14 C 0.51 22.73 7.20 87.66 0.63 23.36 16 15 O -0.60 -32.69 15.50 -3.05 -0.05 -32.74 16 16 C -0.12 -3.68 2.14 -11.01 -0.02 -3.70 16 17 H 0.12 3.82 6.41 -2.39 -0.02 3.80 16 18 C -0.12 -2.58 6.78 31.12 0.21 -2.37 16 19 C -0.09 -1.49 7.63 31.12 0.24 -1.25 16 20 C -0.13 -3.27 3.45 -11.02 -0.04 -3.31 16 21 H 0.11 3.28 7.47 -2.39 -0.02 3.27 16 22 C 0.53 14.18 7.63 87.65 0.67 14.85 16 23 N -0.83 -13.79 8.87 -173.53 -1.54 -15.33 16 24 O -0.59 -21.27 16.74 -3.05 -0.05 -21.32 16 25 H 0.12 2.25 7.84 -2.91 -0.02 2.23 16 26 H 0.11 2.32 8.06 -2.91 -0.02 2.30 16 27 H 0.09 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 29 H 0.11 2.84 5.20 -2.39 -0.01 2.83 16 30 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 31 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 34 H 0.11 1.72 7.54 -2.39 -0.02 1.70 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 1.36 8.09 -2.38 -0.02 1.34 16 37 H 0.42 4.13 8.83 -92.71 -0.82 3.31 16 38 H 0.41 5.73 8.93 -92.71 -0.83 4.90 16 Total: -1.00 -84.24 323.79 2.56 -81.68 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.57 Total: 18.80 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.48 Total: 8.57 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -3.28 Total: -102.25 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -0.10 Total: -54.06 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -84.24 2.56 -81.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563401754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.035 kcal (2) G-P(sol) polarization free energy of solvation -84.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds