Wall clock time and date at job start Thu Apr 9 2020 13:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50694 * 120.00103 * 2 1 4 4 N 1.46503 * 109.47183 * 124.99672 * 3 2 1 5 5 C 1.46500 * 119.99822 * 90.00117 * 4 3 2 6 6 C 1.50706 * 109.46953 * 89.99511 * 5 4 3 7 7 H 1.07999 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99398 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99350 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.34777 * 120.00054 * 269.99794 * 4 3 2 15 15 O 1.21275 * 119.99803 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00130 * 0.02562 * 14 4 3 17 17 H 1.09004 * 112.85132 * 311.19914 * 16 14 4 18 18 C 1.53777 * 113.61312 * 82.49816 * 16 14 4 19 19 C 1.53785 * 87.08182 * 139.98197 * 18 16 14 20 20 C 1.53780 * 113.61604 * 179.97438 * 16 14 4 21 21 H 1.09003 * 113.60898 * 334.57207 * 20 16 14 22 22 C 1.50697 * 113.61569 * 105.46883 * 20 16 14 23 23 N 1.34775 * 120.00425 * 180.02562 * 22 20 16 24 24 O 1.21283 * 119.99854 * 0.02562 * 22 20 16 25 25 H 1.07998 * 119.99726 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99886 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99560 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47133 * 4.99913 * 3 2 1 29 29 H 1.09002 * 109.47344 * 245.00245 * 3 2 1 30 30 H 1.09000 * 109.47175 * 329.99940 * 5 4 3 31 31 H 1.08993 * 109.47452 * 209.99730 * 5 4 3 32 32 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 33 33 H 1.09000 * 113.62087 * 254.52836 * 18 16 14 34 34 H 1.09001 * 113.61726 * 25.43726 * 18 16 14 35 35 H 1.08993 * 113.61658 * 220.02369 * 19 18 16 36 36 H 1.08997 * 113.68948 * 89.12431 * 19 18 16 37 37 H 0.97000 * 119.99383 * 0.02562 * 23 22 20 38 38 H 0.96992 * 120.00246 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3590 0.8256 0.9695 6 6 5.2616 1.9480 0.5259 7 1 4.8588 2.9393 0.3797 8 6 6.6020 1.7093 0.3077 9 7 7.3897 2.6889 -0.0789 10 14 7.2990 -0.0051 0.5613 11 1 7.7563 -0.1506 1.9665 12 1 6.2473 -1.0140 0.2760 13 1 8.4471 -0.2135 -0.3571 14 6 2.5937 1.8223 2.3214 15 8 3.3639 1.8449 3.2579 16 6 1.1892 2.3426 2.4881 17 1 0.8964 3.0320 1.6962 18 6 0.1525 1.2404 2.7622 19 6 -0.4926 2.2070 3.7695 20 6 0.8900 2.8659 3.9028 21 1 1.5149 2.4176 4.6754 22 6 0.8360 4.3693 3.9915 23 7 0.5828 4.9661 5.1731 24 8 1.0203 5.0423 2.9995 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4026 -0.9314 30 1 4.3667 0.0350 0.2192 31 1 4.7142 0.4278 1.9201 32 1 8.3328 2.5211 -0.2321 33 1 -0.4823 1.0151 1.9053 34 1 0.5756 0.3479 3.2231 35 1 -0.8344 1.7212 4.6834 36 1 -1.2468 2.8592 3.3293 37 1 0.4357 4.4279 5.9665 38 1 0.5476 5.9337 5.2301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563401755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:10 Heat of formation + Delta-G solvation = -29.700191 kcal Electronic energy + Delta-G solvation = -20856.172769 eV Core-core repulsion = 17700.066760 eV Total energy + Delta-G solvation = -3156.106009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.64130 -38.77316 -36.81809 -35.72102 -33.58082 -33.18995 -32.06565 -28.67315 -26.89367 -26.38513 -25.30861 -22.37241 -21.39812 -20.04081 -19.55018 -18.36164 -17.69766 -16.92789 -16.83574 -16.28195 -15.53475 -14.77550 -14.75995 -14.50867 -14.10684 -14.07624 -13.38336 -13.06570 -12.82191 -12.55958 -12.37998 -12.02114 -11.84996 -11.46590 -11.29717 -11.14575 -10.89391 -10.76911 -10.57780 -10.41343 -10.12111 -9.72490 -9.66365 -9.52058 -9.25681 -8.82278 -8.54725 -7.69627 -6.03770 -4.02313 2.33858 2.71623 3.31262 3.34341 3.37279 3.38425 3.55075 3.99385 4.42836 4.43323 4.54872 4.73920 4.82775 5.11586 5.20968 5.25553 5.30343 5.39283 5.59529 5.61521 5.71934 5.73827 5.88521 5.99877 6.01055 6.17392 6.37068 6.69950 6.72396 6.79264 6.85597 6.98022 7.34088 7.38572 7.65581 8.29484 8.33824 8.52310 8.98751 9.04682 9.56185 11.09792 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.006419 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.338179 B = 4360.972361 C = 5245.021201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.134 3.866 4 N -0.586 5.586 5 C 0.216 3.784 6 C -0.528 4.528 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.876 3.124 11 H -0.274 1.274 12 H -0.266 1.266 13 H -0.285 1.285 14 C 0.522 3.478 15 O -0.543 6.543 16 C -0.112 4.112 17 H 0.121 0.879 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.119 4.119 21 H 0.126 0.874 22 C 0.529 3.471 23 N -0.857 5.857 24 O -0.538 6.538 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.400 0.600 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.233 -3.804 7.012 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.176 4.176 3 C 0.010 3.990 4 N -0.316 5.316 5 C 0.095 3.905 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.131 4.131 9 N -0.536 5.536 10 Si 0.703 3.297 11 H -0.200 1.200 12 H -0.191 1.191 13 H -0.211 1.211 14 C 0.309 3.691 15 O -0.420 6.420 16 C -0.134 4.134 17 H 0.138 0.862 18 C -0.163 4.163 19 C -0.161 4.161 20 C -0.140 4.140 21 H 0.144 0.856 22 C 0.314 3.686 23 N -0.420 5.420 24 O -0.414 6.414 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.228 0.772 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.436 -3.481 6.690 19.919 hybrid contribution 0.589 -0.581 0.467 0.950 sum -17.847 -4.062 7.157 19.653 Atomic orbital electron populations 1.23752 0.95724 1.01514 1.02382 1.23500 0.96125 0.99670 0.98284 1.20623 0.92389 0.94333 0.91609 1.47817 1.13456 1.61057 1.09251 1.19665 0.78359 0.95296 0.97179 1.21364 0.92972 0.96724 1.45561 0.90668 1.24866 0.96722 0.96887 0.94583 1.69910 1.05303 1.31665 1.46724 0.86851 0.79101 0.85134 0.78591 1.19987 1.19082 1.21091 1.20061 0.88318 0.77870 0.82825 1.90635 1.55252 1.56223 1.39915 1.22640 0.94158 0.98953 0.97641 0.86167 1.23015 0.96868 0.96607 0.99854 1.22812 0.94613 0.98235 1.00406 1.22688 0.99579 0.91582 1.00194 0.85577 1.20508 0.74594 0.90607 0.82887 1.43839 1.75923 1.11137 1.11123 1.90751 1.48451 1.66113 1.36037 0.88645 0.88424 0.87302 0.90619 0.88873 0.95267 0.94646 0.92618 0.89352 0.89499 0.90355 0.89611 0.77197 0.77161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 11.75 29.01 0.34 -1.69 16 2 C -0.16 -2.07 9.36 -36.03 -0.34 -2.41 16 3 C 0.13 2.21 5.65 -5.19 -0.03 2.18 16 4 N -0.59 -12.40 2.44 -176.43 -0.43 -12.83 16 5 C 0.22 5.39 4.23 -5.19 -0.02 5.36 16 6 C -0.53 -15.65 9.94 -34.44 -0.34 -15.99 16 7 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -28.41 13.96 55.43 0.77 -27.63 16 10 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 C 0.52 11.01 7.20 -10.99 -0.08 10.94 16 15 O -0.54 -13.59 15.48 5.56 0.09 -13.50 16 16 C -0.11 -1.76 2.29 -90.96 -0.21 -1.97 16 17 H 0.12 1.94 6.23 -51.93 -0.32 1.62 16 18 C -0.13 -1.43 6.62 -25.92 -0.17 -1.60 16 19 C -0.12 -1.17 7.63 -25.94 -0.20 -1.37 16 20 C -0.12 -1.61 3.47 -90.98 -0.32 -1.92 16 21 H 0.13 1.77 7.43 -51.93 -0.39 1.38 16 22 C 0.53 7.74 7.62 -10.99 -0.08 7.66 16 23 N -0.86 -8.37 8.87 31.22 0.28 -8.09 16 24 O -0.54 -10.39 16.74 5.55 0.09 -10.30 16 25 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 26 H 0.10 0.91 7.08 -52.49 -0.37 0.54 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.08 1.12 5.87 -51.93 -0.30 0.81 16 29 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 33 H 0.09 0.86 4.89 -51.93 -0.25 0.61 16 34 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.40 2.59 8.83 -40.82 -0.36 2.23 16 38 H 0.40 3.46 8.93 -40.82 -0.36 3.09 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -37.74 315.07 -5.87 -43.61 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.21 Total: 5.48 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.54 Total: 1.23 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.62 Total: -48.56 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.18 Total: -23.80 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.74 -5.87 -43.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563401755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -37.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds