Wall clock time and date at job start Thu Apr 9 2020 13:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50694 * 120.00103 * 2 1 4 4 N 1.46503 * 109.47183 * 124.99672 * 3 2 1 5 5 C 1.46500 * 119.99822 * 90.00117 * 4 3 2 6 6 C 1.50706 * 109.46953 * 89.99511 * 5 4 3 7 7 H 1.07999 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99398 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99350 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.34777 * 120.00054 * 269.99794 * 4 3 2 15 15 O 1.21275 * 119.99803 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00130 * 0.02562 * 14 4 3 17 17 H 1.09004 * 112.85132 * 311.19914 * 16 14 4 18 18 C 1.53777 * 113.61312 * 82.49816 * 16 14 4 19 19 C 1.53785 * 87.08182 * 139.98197 * 18 16 14 20 20 C 1.53780 * 113.61604 * 179.97438 * 16 14 4 21 21 H 1.09003 * 113.60898 * 334.57207 * 20 16 14 22 22 C 1.50697 * 113.61569 * 105.46883 * 20 16 14 23 23 N 1.34775 * 120.00425 * 180.02562 * 22 20 16 24 24 O 1.21283 * 119.99854 * 0.02562 * 22 20 16 25 25 H 1.07998 * 119.99726 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99886 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99560 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47133 * 4.99913 * 3 2 1 29 29 H 1.09002 * 109.47344 * 245.00245 * 3 2 1 30 30 H 1.09000 * 109.47175 * 329.99940 * 5 4 3 31 31 H 1.08993 * 109.47452 * 209.99730 * 5 4 3 32 32 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 33 33 H 1.09000 * 113.62087 * 254.52836 * 18 16 14 34 34 H 1.09001 * 113.61726 * 25.43726 * 18 16 14 35 35 H 1.08993 * 113.61658 * 220.02369 * 19 18 16 36 36 H 1.08997 * 113.68948 * 89.12431 * 19 18 16 37 37 H 0.97000 * 119.99383 * 0.02562 * 23 22 20 38 38 H 0.96992 * 120.00246 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.3590 0.8256 0.9695 6 6 5.2616 1.9480 0.5259 7 1 4.8588 2.9393 0.3797 8 6 6.6020 1.7093 0.3077 9 7 7.3897 2.6889 -0.0789 10 14 7.2990 -0.0051 0.5613 11 1 7.7563 -0.1506 1.9665 12 1 6.2473 -1.0140 0.2760 13 1 8.4471 -0.2135 -0.3571 14 6 2.5937 1.8223 2.3214 15 8 3.3639 1.8449 3.2579 16 6 1.1892 2.3426 2.4881 17 1 0.8964 3.0320 1.6962 18 6 0.1525 1.2404 2.7622 19 6 -0.4926 2.2070 3.7695 20 6 0.8900 2.8659 3.9028 21 1 1.5149 2.4176 4.6754 22 6 0.8360 4.3693 3.9915 23 7 0.5828 4.9661 5.1731 24 8 1.0203 5.0423 2.9995 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4026 -0.9314 30 1 4.3667 0.0350 0.2192 31 1 4.7142 0.4278 1.9201 32 1 8.3328 2.5211 -0.2321 33 1 -0.4823 1.0151 1.9053 34 1 0.5756 0.3479 3.2231 35 1 -0.8344 1.7212 4.6834 36 1 -1.2468 2.8592 3.3293 37 1 0.4357 4.4279 5.9665 38 1 0.5476 5.9337 5.2301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563401755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:09 Heat of formation + Delta-G solvation = -59.993142 kcal Electronic energy + Delta-G solvation = -20857.486370 eV Core-core repulsion = 17700.066760 eV Total energy + Delta-G solvation = -3157.419610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87919 -40.18848 -38.03408 -37.24358 -35.08518 -34.61558 -33.75997 -30.56862 -28.01645 -27.57453 -26.76322 -24.23715 -22.46639 -21.18093 -20.69695 -19.71174 -19.10305 -18.82762 -18.10537 -17.51787 -17.18039 -16.41760 -16.08720 -15.62448 -15.60079 -15.34695 -14.93595 -14.48628 -14.24082 -13.90025 -13.79294 -13.75813 -13.24271 -12.90516 -12.69271 -12.46777 -12.35598 -12.21326 -12.06622 -11.87440 -11.77240 -11.44523 -10.88006 -10.85937 -10.67573 -10.60016 -10.10586 -9.44305 -8.36734 -6.42857 1.29055 1.34229 1.37078 1.43804 1.59655 1.75773 2.28605 2.40269 2.69119 2.97025 3.34151 3.57278 3.73338 3.76689 3.99081 4.10886 4.19305 4.35233 4.55963 4.65728 4.71321 4.73399 4.85134 4.91039 4.92433 5.05815 5.07384 5.17513 5.40735 5.43398 5.59882 5.78836 5.88873 5.89736 6.21216 6.45375 6.58674 6.69485 7.17612 7.35097 7.39769 8.80969 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.006419 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.338179 B = 4360.972361 C = 5245.021201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.185 4.185 3 C 0.132 3.868 4 N -0.594 5.594 5 C 0.226 3.774 6 C -0.540 4.540 7 H 0.019 0.981 8 C 0.008 3.992 9 N -0.947 5.947 10 Si 0.954 3.046 11 H -0.274 1.274 12 H -0.236 1.236 13 H -0.273 1.273 14 C 0.510 3.490 15 O -0.596 6.596 16 C -0.120 4.120 17 H 0.113 0.887 18 C -0.111 4.111 19 C -0.096 4.096 20 C -0.126 4.126 21 H 0.120 0.880 22 C 0.522 3.478 23 N -0.832 5.832 24 O -0.596 6.596 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.020 0.980 32 H 0.269 0.731 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.419 0.581 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.314 -6.379 7.894 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.204 4.204 3 C 0.010 3.990 4 N -0.323 5.323 5 C 0.104 3.896 6 C -0.579 4.579 7 H 0.038 0.962 8 C -0.190 4.190 9 N -0.587 5.587 10 Si 0.776 3.224 11 H -0.200 1.200 12 H -0.159 1.159 13 H -0.198 1.198 14 C 0.299 3.701 15 O -0.477 6.477 16 C -0.142 4.142 17 H 0.131 0.869 18 C -0.149 4.149 19 C -0.133 4.133 20 C -0.147 4.147 21 H 0.138 0.862 22 C 0.308 3.692 23 N -0.396 5.396 24 O -0.477 6.477 25 H 0.142 0.858 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.251 0.749 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -21.591 -6.063 7.596 23.677 hybrid contribution 1.496 0.376 0.205 1.556 sum -20.095 -5.687 7.801 22.294 Atomic orbital electron populations 1.24066 0.94436 1.03536 0.97165 1.23123 0.96993 0.97340 1.02985 1.20804 0.91847 0.97297 0.89045 1.47957 1.12725 1.60744 1.10903 1.19307 0.79949 0.93974 0.96413 1.21586 0.94388 0.95891 1.46010 0.96211 1.25949 0.96919 1.02293 0.93818 1.70077 1.05949 1.34703 1.48019 0.85628 0.79087 0.79204 0.78490 1.19970 1.15880 1.19752 1.21132 0.90249 0.76757 0.81936 1.90584 1.57230 1.58316 1.41602 1.22758 0.91422 1.01012 0.98982 0.86894 1.23030 0.95171 0.95503 1.01165 1.22793 0.92221 0.96902 1.01394 1.22798 1.02446 0.91000 0.98486 0.86212 1.20812 0.74052 0.91138 0.83227 1.43629 1.73626 1.11845 1.10464 1.90728 1.51507 1.67229 1.38216 0.85827 0.86887 0.87717 0.89264 0.90843 0.93212 0.96168 0.92202 0.87163 0.89591 0.86807 0.88181 0.74947 0.76290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 11.75 67.77 0.80 -1.74 16 2 C -0.19 -4.52 9.36 25.64 0.24 -4.28 16 3 C 0.13 4.39 5.65 85.63 0.48 4.87 16 4 N -0.59 -25.97 2.44 -830.51 -2.03 -28.00 16 5 C 0.23 11.62 4.23 85.63 0.36 11.98 16 6 C -0.54 -33.84 9.94 25.60 0.25 -33.59 16 7 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 8 C 0.01 0.49 5.47 84.66 0.46 0.95 16 9 N -0.95 -62.58 13.96 21.45 0.30 -62.28 16 10 Si 0.95 45.96 27.47 68.60 1.88 47.85 16 11 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.51 22.19 7.20 87.66 0.63 22.82 16 15 O -0.60 -31.23 15.48 -3.02 -0.05 -31.28 16 16 C -0.12 -3.71 2.29 -11.02 -0.03 -3.74 16 17 H 0.11 3.67 6.23 -2.38 -0.01 3.65 16 18 C -0.11 -2.15 6.62 31.12 0.21 -1.95 16 19 C -0.10 -1.44 7.63 31.11 0.24 -1.20 16 20 C -0.13 -3.25 3.47 -11.03 -0.04 -3.28 16 21 H 0.12 3.28 7.43 -2.39 -0.02 3.26 16 22 C 0.52 15.04 7.62 87.66 0.67 15.71 16 23 N -0.83 -15.01 8.87 -173.53 -1.54 -16.55 16 24 O -0.60 -23.66 16.74 -3.04 -0.05 -23.71 16 25 H 0.12 1.46 8.06 -2.91 -0.02 1.43 16 26 H 0.11 1.55 7.08 -2.91 -0.02 1.53 16 27 H 0.10 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.09 2.64 5.87 -2.39 -0.01 2.63 16 29 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 30 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 31 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 32 H 0.27 16.39 8.31 -92.70 -0.77 15.62 16 33 H 0.11 1.62 4.89 -2.39 -0.01 1.61 16 34 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 37 H 0.42 4.40 8.83 -92.71 -0.82 3.58 16 38 H 0.41 6.53 8.93 -92.71 -0.83 5.70 16 Total: -1.00 -90.26 315.07 2.19 -88.07 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.61 Total: 19.34 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.28 Total: 6.55 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.27 Total: -106.83 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.10 Total: -54.99 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.85 kcal Total: -90.26 2.19 -88.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563401755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.075 kcal (2) G-P(sol) polarization free energy of solvation -90.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds