Wall clock time and date at job start Thu Apr 9 2020 13:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00484 * 2 1 4 4 N 1.46499 * 109.47023 * 123.86657 * 3 2 1 5 5 C 1.46494 * 120.00143 * 264.34961 * 4 3 2 6 6 C 1.50699 * 109.47069 * 269.99764 * 5 4 3 7 7 H 1.08000 * 120.00396 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00365 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99480 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00371 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46903 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46972 * 120.00149 * 10 8 6 13 13 H 1.48501 * 109.47462 * 240.00407 * 10 8 6 14 14 C 1.34774 * 119.99550 * 84.34731 * 4 3 2 15 15 O 1.21288 * 119.99848 * 185.39419 * 14 4 3 16 16 C 1.50704 * 120.00399 * 5.39327 * 14 4 3 17 17 H 1.09000 * 112.90238 * 340.94917 * 16 14 4 18 18 C 1.53775 * 113.61647 * 209.69323 * 16 14 4 19 19 C 1.53776 * 87.08398 * 270.88541 * 18 16 14 20 20 C 1.53781 * 87.08185 * 334.56599 * 19 18 16 21 21 H 1.09000 * 113.61651 * 270.88606 * 20 19 18 22 22 C 1.50699 * 113.61423 * 140.06070 * 20 19 18 23 23 N 1.34777 * 119.99594 * 50.99565 * 22 20 19 24 24 O 1.21284 * 120.00217 * 230.98925 * 22 20 19 25 25 H 1.07995 * 120.00677 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99677 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99513 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46792 * 3.86959 * 3 2 1 29 29 H 1.08995 * 109.47610 * 243.87543 * 3 2 1 30 30 H 1.08994 * 109.47896 * 29.99948 * 5 4 3 31 31 H 1.09006 * 109.47195 * 150.00075 * 5 4 3 32 32 H 0.97002 * 119.99310 * 179.97438 * 9 8 6 33 33 H 1.08997 * 113.61476 * 156.33538 * 18 16 14 34 34 H 1.09001 * 113.69032 * 25.44848 * 18 16 14 35 35 H 1.09003 * 113.61418 * 220.02173 * 19 18 16 36 36 H 1.09000 * 113.69329 * 89.12385 * 19 18 16 37 37 H 0.96995 * 120.00333 * 359.97438 * 23 22 20 38 38 H 0.97006 * 119.99604 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9744 1.3430 1.1469 5 6 2.5607 1.9998 2.3893 6 6 2.9587 3.4526 2.3460 7 1 3.4691 3.8472 1.4799 8 6 2.6722 4.2780 3.4127 9 7 2.0520 3.7972 4.4680 10 14 3.1662 6.0787 3.3594 11 1 3.8463 6.3674 2.0712 12 1 1.9541 6.9282 3.4801 13 1 4.0903 6.3720 4.4842 14 6 4.1927 0.7736 1.0589 15 8 4.9083 0.7184 2.0366 16 6 4.6660 0.2054 -0.2543 17 1 3.8505 0.0116 -0.9511 18 6 5.6383 -0.9758 -0.0998 19 6 6.7726 0.0623 -0.0793 20 6 5.8361 0.9852 -0.8769 21 1 5.9175 0.8620 -1.9569 22 6 5.8997 2.4279 -0.4461 23 7 7.0913 3.0500 -0.3479 24 8 4.8785 3.0292 -0.1879 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3573 2.1324 0.0694 29 1 2.6372 1.3934 -0.9226 30 1 1.4790 1.9225 2.4985 31 1 3.0469 1.5149 3.2359 32 1 1.8507 4.3778 5.2186 33 1 5.6656 -1.6352 -0.9672 34 1 5.5245 -1.5168 0.8396 35 1 7.6578 -0.2471 -0.6349 36 1 7.0074 0.4349 0.9178 37 1 7.9079 2.5690 -0.5542 38 1 7.1322 3.9786 -0.0703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563401756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:15 Heat of formation + Delta-G solvation = -26.835370 kcal Electronic energy + Delta-G solvation = -21449.655719 eV Core-core repulsion = 18293.673938 eV Total energy + Delta-G solvation = -3155.981781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64093 -38.22425 -36.72205 -35.32661 -33.20686 -33.00393 -31.85766 -28.01427 -26.67400 -26.00031 -25.07658 -22.70369 -21.04192 -20.15498 -19.60308 -17.89655 -17.17503 -16.62299 -16.25071 -16.07454 -15.33728 -14.79432 -14.51866 -14.18834 -13.88882 -13.76549 -13.48418 -12.81777 -12.57375 -12.24001 -12.13009 -11.70958 -11.50484 -11.21428 -11.16368 -10.89649 -10.72393 -10.66503 -10.49844 -10.23144 -9.98159 -9.42053 -9.33094 -9.20420 -9.05517 -8.67075 -8.25331 -7.42212 -5.84946 -3.85338 2.54051 3.07761 3.40157 3.42943 3.47016 3.56046 3.83231 4.15400 4.54953 4.62482 4.73159 4.93948 4.97258 5.28004 5.36976 5.47911 5.51659 5.54643 5.57521 5.77391 5.80006 5.90183 6.08346 6.12307 6.12567 6.40488 6.47762 6.87822 7.02714 7.12087 7.26058 7.62973 7.65479 7.80272 8.15935 8.47904 8.64133 8.70684 9.18830 9.35690 9.78306 11.23897 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.008791 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.048249 B = 3184.132475 C = 4304.817884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.141 3.859 4 N -0.574 5.574 5 C 0.248 3.752 6 C -0.510 4.510 7 H 0.078 0.922 8 C 0.053 3.947 9 N -0.903 5.903 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.287 1.287 14 C 0.536 3.464 15 O -0.549 6.549 16 C -0.121 4.121 17 H 0.095 0.905 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.119 4.119 21 H 0.119 0.881 22 C 0.512 3.488 23 N -0.859 5.859 24 O -0.499 6.499 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.040 0.960 32 H 0.258 0.742 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.394 0.606 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.828 -8.469 -14.339 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.187 4.187 3 C 0.017 3.983 4 N -0.302 5.302 5 C 0.129 3.871 6 C -0.549 4.549 7 H 0.096 0.904 8 C -0.147 4.147 9 N -0.544 5.544 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.213 1.213 14 C 0.322 3.678 15 O -0.428 6.428 16 C -0.143 4.143 17 H 0.114 0.886 18 C -0.159 4.159 19 C -0.165 4.165 20 C -0.141 4.141 21 H 0.137 0.863 22 C 0.296 3.704 23 N -0.423 5.423 24 O -0.371 6.371 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.222 0.778 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.317 -8.173 -13.494 16.994 hybrid contribution 0.566 1.200 0.002 1.327 sum 6.883 -6.972 -13.492 16.674 Atomic orbital electron populations 1.23799 0.95859 1.01634 1.01031 1.23546 0.96469 0.99199 0.99515 1.20493 0.93169 0.94618 0.90036 1.47889 1.13531 1.53667 1.15136 1.19255 0.95129 0.92329 0.80437 1.21809 1.36286 0.93781 1.03061 0.90419 1.24957 0.95668 0.98641 0.95409 1.69975 1.42405 1.35530 1.06505 0.86485 0.78031 0.85325 0.77856 1.19724 1.21303 1.21318 1.19397 0.81994 0.78225 0.88175 1.90619 1.54763 1.59146 1.38295 1.22490 0.97294 0.97025 0.97530 0.88648 1.22690 0.94973 0.95468 1.02750 1.22970 0.96316 0.95763 1.01421 1.22653 0.98559 0.91728 1.01149 0.86307 1.20441 0.83936 0.88661 0.77407 1.43779 1.08539 1.16580 1.73409 1.90928 1.33375 1.66410 1.46399 0.88904 0.88334 0.87914 0.89681 0.90778 0.95429 0.94184 0.93235 0.89642 0.90235 0.91167 0.88165 0.77837 0.77051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.32 29.01 0.42 -2.17 16 2 C -0.17 -2.59 9.43 -36.03 -0.34 -2.92 16 3 C 0.14 2.59 5.48 -5.20 -0.03 2.57 16 4 N -0.57 -13.12 2.08 -176.44 -0.37 -13.48 16 5 C 0.25 6.94 5.18 -5.20 -0.03 6.91 16 6 C -0.51 -15.43 9.39 -34.44 -0.32 -15.75 16 7 H 0.08 2.42 6.15 -52.49 -0.32 2.09 16 8 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -28.32 13.29 55.43 0.74 -27.59 16 10 Si 0.89 23.37 29.54 -169.99 -5.02 18.35 16 11 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 C 0.54 11.64 4.74 -10.98 -0.05 11.59 16 15 O -0.55 -14.04 14.78 5.55 0.08 -13.96 16 16 C -0.12 -1.88 3.42 -90.96 -0.31 -2.19 16 17 H 0.10 1.30 5.95 -51.93 -0.31 0.99 16 18 C -0.12 -1.51 7.45 -25.92 -0.19 -1.70 16 19 C -0.13 -1.55 6.88 -25.92 -0.18 -1.73 16 20 C -0.12 -1.58 4.12 -90.96 -0.37 -1.96 16 21 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 22 C 0.51 8.63 6.94 -10.99 -0.08 8.55 16 23 N -0.86 -11.04 8.79 31.22 0.27 -10.76 16 24 O -0.50 -11.09 14.14 5.55 0.08 -11.01 16 25 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 27 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.08 1.66 7.68 -51.93 -0.40 1.26 16 29 H 0.07 1.23 6.42 -51.93 -0.33 0.90 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 1.26 7.36 -51.93 -0.38 0.88 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.12 7.97 -51.93 -0.41 0.71 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.55 7.13 -51.93 -0.37 1.18 16 37 H 0.39 3.54 8.59 -40.82 -0.35 3.19 16 38 H 0.40 5.17 8.93 -40.82 -0.36 4.80 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -37.60 317.64 -6.34 -43.94 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.32 Total: 7.01 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.59 Total: 2.71 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.64 Total: -51.83 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.16 Total: -24.97 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.60 -6.34 -43.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563401756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.108 kcal (2) G-P(sol) polarization free energy of solvation -37.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds