Wall clock time and date at job start Thu Apr 9 2020 13:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99745 * 2 1 4 4 N 1.46501 * 109.47076 * 124.72228 * 3 2 1 5 5 C 1.46502 * 119.99710 * 89.99863 * 4 3 2 6 6 C 1.50696 * 109.47011 * 90.00261 * 5 4 3 7 7 H 1.07996 * 120.00451 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99699 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00426 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99642 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47530 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47016 * 120.00101 * 10 8 6 13 13 H 1.48504 * 109.47142 * 239.99269 * 10 8 6 14 14 C 1.34775 * 120.00393 * 269.99900 * 4 3 2 15 15 O 1.21277 * 120.00133 * 180.02562 * 14 4 3 16 16 C 1.50706 * 119.99411 * 359.97438 * 14 4 3 17 17 H 1.08993 * 112.85009 * 26.62813 * 16 14 4 18 18 C 1.53789 * 113.61102 * 157.82516 * 16 14 4 19 19 C 1.53777 * 87.08003 * 139.97948 * 18 16 14 20 20 C 1.53781 * 113.61202 * 255.42829 * 16 14 4 21 21 H 1.09005 * 113.61403 * 105.47459 * 20 16 14 22 22 C 1.50698 * 113.61913 * 334.57090 * 20 16 14 23 23 N 1.34780 * 119.99546 * 91.01644 * 22 20 16 24 24 O 1.21277 * 120.00165 * 271.02479 * 22 20 16 25 25 H 1.08007 * 120.00179 * 180.27849 * 1 2 3 26 26 H 1.08004 * 120.00207 * 0.27512 * 1 2 3 27 27 H 1.07995 * 120.00069 * 179.71824 * 2 1 3 28 28 H 1.09001 * 109.47096 * 244.72246 * 3 2 1 29 29 H 1.08998 * 109.47286 * 4.72340 * 3 2 1 30 30 H 1.09008 * 109.46887 * 210.00201 * 5 4 3 31 31 H 1.09002 * 109.47328 * 329.99409 * 5 4 3 32 32 H 0.96993 * 120.00175 * 180.02562 * 9 8 6 33 33 H 1.08993 * 113.61385 * 254.52926 * 18 16 14 34 34 H 1.08997 * 113.61342 * 25.43081 * 18 16 14 35 35 H 1.09004 * 113.61516 * 89.11278 * 19 18 16 36 36 H 1.08998 * 113.61563 * 219.93489 * 19 18 16 37 37 H 0.96998 * 120.00413 * 0.02562 * 23 22 20 38 38 H 0.97001 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9889 1.3347 1.1353 5 6 4.3548 0.8281 0.9802 6 6 5.2592 1.9494 0.5378 7 1 4.8569 2.9402 0.3868 8 6 6.6003 1.7101 0.3247 9 7 7.0903 0.5035 0.5081 10 14 7.7213 3.0998 -0.2243 11 1 6.9309 4.3499 -0.3582 12 1 8.7944 3.2976 0.7830 13 1 8.3298 2.7567 -1.5348 14 6 2.5839 1.8280 2.3223 15 8 3.3502 1.8529 3.2620 16 6 1.1790 2.3496 2.4816 17 1 0.4745 1.8859 1.7913 18 6 0.6907 2.3688 3.9398 19 6 0.0346 3.7222 3.6196 20 6 1.0917 3.8847 2.5122 21 1 0.6988 4.3181 1.5924 22 6 2.3589 4.5523 2.9806 23 7 3.3006 4.9131 2.0864 24 8 2.5315 4.7647 4.1621 25 1 -0.5401 -0.9353 0.0045 26 1 -0.5401 0.9353 -0.0045 27 1 1.8500 -0.9352 0.0046 28 1 2.6251 1.4004 -0.9293 29 1 1.3581 2.1319 0.0846 30 1 4.7060 0.4325 1.9333 31 1 4.3656 0.0356 0.2318 32 1 8.0337 0.3353 0.3586 33 1 -0.0253 1.5802 4.1708 34 1 1.4975 2.4365 4.6695 35 1 -0.9835 3.6350 3.2401 36 1 0.1255 4.4526 4.4236 37 1 3.1626 4.7434 1.1414 38 1 4.1162 5.3432 2.3879 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563401757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:17 Heat of formation + Delta-G solvation = -59.746460 kcal Electronic energy + Delta-G solvation = -21354.840899 eV Core-core repulsion = 18197.431986 eV Total energy + Delta-G solvation = -3157.408913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.01889 -39.95212 -37.86510 -37.11520 -35.08592 -34.57119 -33.60668 -29.96531 -27.72207 -27.58951 -26.69161 -24.59075 -22.80705 -21.17865 -20.50810 -19.70292 -18.54689 -18.48088 -17.98435 -17.38010 -16.91206 -16.67682 -16.11460 -15.79882 -15.35849 -15.11946 -14.87038 -14.32800 -14.25328 -14.12555 -13.69572 -13.46595 -13.00475 -12.89302 -12.76556 -12.44432 -12.18971 -12.16919 -12.09281 -11.70722 -11.62792 -11.37805 -10.93104 -10.63555 -10.56445 -10.49484 -10.20341 -9.40735 -8.19343 -6.32649 1.36385 1.38252 1.39894 1.49795 1.56096 1.89129 2.34153 2.47944 2.71016 3.11688 3.44600 3.63857 3.79433 3.83261 4.05968 4.12304 4.22813 4.36355 4.52039 4.64143 4.75107 4.85456 4.89370 5.01405 5.09726 5.14575 5.16926 5.28377 5.49447 5.61461 5.77892 5.88050 5.88487 5.89021 6.09717 6.50179 6.75502 6.84506 7.32738 7.38123 7.54666 8.88535 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.008018 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.565462 B = 3491.318554 C = 4558.957066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.195 4.195 3 C 0.132 3.868 4 N -0.593 5.593 5 C 0.261 3.739 6 C -0.524 4.524 7 H 0.070 0.930 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.252 1.252 12 H -0.293 1.293 13 H -0.275 1.275 14 C 0.502 3.498 15 O -0.589 6.589 16 C -0.115 4.115 17 H 0.156 0.844 18 C -0.130 4.130 19 C -0.099 4.099 20 C -0.121 4.121 21 H 0.151 0.849 22 C 0.527 3.473 23 N -0.838 5.838 24 O -0.588 6.588 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.113 0.887 30 H -0.015 1.015 31 H 0.017 0.983 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.140 0.860 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.053 5.730 -4.800 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.215 4.215 3 C 0.010 3.990 4 N -0.323 5.323 5 C 0.140 3.860 6 C -0.563 4.563 7 H 0.088 0.912 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.176 1.176 12 H -0.220 1.220 13 H -0.201 1.201 14 C 0.291 3.709 15 O -0.469 6.469 16 C -0.136 4.136 17 H 0.174 0.826 18 C -0.168 4.168 19 C -0.137 4.137 20 C -0.143 4.143 21 H 0.168 0.832 22 C 0.313 3.687 23 N -0.399 5.399 24 O -0.468 6.468 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.004 0.996 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.158 0.842 36 H 0.085 0.915 37 H 0.240 0.760 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.539 5.696 -3.587 19.723 hybrid contribution 2.144 -0.034 -0.356 2.173 sum -16.396 5.662 -3.943 17.788 Atomic orbital electron populations 1.24095 0.94295 1.03809 0.97410 1.23278 0.97204 0.98227 1.02761 1.20889 0.92194 0.96571 0.89357 1.48203 1.13117 1.60083 1.10866 1.18692 0.78695 0.94116 0.94501 1.21747 0.93602 0.96500 1.44455 0.91185 1.25899 0.99861 0.98124 0.95812 1.70082 1.14343 1.22554 1.50606 0.85409 0.78454 0.79701 0.77497 1.17551 1.21954 1.20100 1.21124 0.90141 0.77658 0.81975 1.90694 1.57524 1.57448 1.41277 1.22987 0.93492 0.95250 1.01890 0.82645 1.22859 1.00132 0.99871 0.93943 1.22817 0.98254 0.95993 0.96601 1.22522 0.94040 0.93689 1.04041 0.83179 1.20584 0.85869 0.76853 0.85439 1.43744 1.21624 1.63286 1.11273 1.90656 1.80537 1.56760 1.18806 0.87252 0.85389 0.89693 0.89952 0.86893 0.99646 0.96517 0.92819 0.88522 0.93122 0.84232 0.91502 0.75958 0.77223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 13.48 67.78 0.91 -1.59 16 2 C -0.20 -4.72 9.67 25.65 0.25 -4.47 16 3 C 0.13 3.59 5.48 85.63 0.47 4.06 16 4 N -0.59 -23.53 2.44 -830.48 -2.03 -25.56 16 5 C 0.26 13.80 5.16 85.63 0.44 14.24 16 6 C -0.52 -28.52 9.39 25.60 0.24 -28.28 16 7 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 8 C 0.00 0.06 5.46 84.66 0.46 0.52 16 9 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 10 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 11 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 14 C 0.50 20.24 6.23 87.66 0.55 20.79 16 15 O -0.59 -31.42 14.81 -3.02 -0.04 -31.46 16 16 C -0.11 -3.04 3.05 -11.01 -0.03 -3.08 16 17 H 0.16 2.76 5.39 -2.39 -0.01 2.75 16 18 C -0.13 -3.58 7.15 31.12 0.22 -3.36 16 19 C -0.10 -2.01 7.43 31.18 0.23 -1.78 16 20 C -0.12 -2.84 4.27 -10.95 -0.05 -2.88 16 21 H 0.15 2.00 8.14 -2.38 -0.02 1.98 16 22 C 0.53 17.99 5.65 87.66 0.50 18.49 16 23 N -0.84 -25.87 8.84 -173.53 -1.53 -27.41 16 24 O -0.59 -25.59 16.31 -3.02 -0.05 -25.64 16 25 H 0.11 1.49 8.06 -2.91 -0.02 1.47 16 26 H 0.13 1.23 7.58 -2.91 -0.02 1.20 16 27 H 0.08 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.11 2.07 6.13 -2.39 -0.01 2.05 16 30 H -0.01 -0.93 7.42 -2.38 -0.02 -0.94 16 31 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.95 6.99 -2.39 -0.02 1.94 16 35 H 0.14 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.07 1.63 7.57 -2.39 -0.02 1.61 16 37 H 0.41 10.49 8.83 -92.71 -0.82 9.68 16 38 H 0.40 12.74 8.93 -92.71 -0.83 11.91 16 Total: -1.00 -83.78 320.61 2.28 -81.49 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.56 Total: 26.75 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 4.19 Total: 12.65 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.28 Total: -109.48 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.09 Total: -57.10 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -83.78 2.28 -81.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563401757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.746 kcal (2) G-P(sol) polarization free energy of solvation -83.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds