Wall clock time and date at job start Thu Apr 9 2020 13:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47009 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47018 * 120.00403 * 9 7 5 12 12 H 1.48503 * 109.47296 * 240.00469 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00569 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47303 * 180.02562 * 18 17 15 20 20 C 1.34514 * 125.79494 * 89.71656 * 19 18 17 21 21 C 1.41383 * 106.84183 * 179.89084 * 20 19 18 22 22 C 1.34514 * 106.84282 * 0.36777 * 21 20 19 23 23 O 1.34304 * 125.78704 * 270.01760 * 19 18 17 24 24 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 25 25 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 26 26 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 27 27 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 28 28 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 29 29 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 30 30 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 31 31 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 32 32 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 33 33 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.46595 * 299.99738 * 18 17 15 35 35 H 1.08997 * 109.47473 * 59.99651 * 18 17 15 36 36 H 1.08002 * 126.57726 * 0.02562 * 20 19 18 37 37 H 1.08001 * 126.57637 * 180.16095 * 21 20 19 38 38 H 1.07995 * 125.78910 * 179.75491 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.5983 1.5472 0.2046 11 1 6.3934 1.6185 2.6196 12 1 6.4938 -0.5166 1.4742 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 6 0.3564 6.1186 -3.6585 19 6 0.2567 7.6117 -3.4802 20 6 1.2288 8.5025 -3.7466 21 6 0.7085 9.7807 -3.4394 22 6 -0.5476 9.5939 -2.9959 23 8 -0.8159 8.2781 -3.0228 24 1 -0.3634 0.5828 -0.8464 25 1 -0.3634 -1.0244 -0.0813 26 1 -0.3632 0.4417 0.9280 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8229 -0.0595 2.9545 30 1 2.2975 1.8656 -1.9983 31 1 0.8734 3.7759 -0.2619 32 1 2.5415 3.9598 -0.8553 33 1 1.0730 6.0711 -1.6605 34 1 1.0382 5.8958 -4.4792 35 1 -0.6296 5.7127 -3.8849 36 1 2.2164 8.2835 -4.1249 37 1 1.2222 10.7255 -3.5384 38 1 -1.2253 10.3701 -2.6727 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569619133.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:21 Heat of formation + Delta-G solvation = -46.361338 kcal Electronic energy + Delta-G solvation = -19565.889767 eV Core-core repulsion = 16409.061276 eV Total energy + Delta-G solvation = -3156.828491 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.54475 -40.64874 -37.81380 -36.05315 -34.36586 -33.92314 -32.95348 -31.49814 -29.12051 -27.45091 -25.79291 -24.22297 -22.70697 -21.65461 -21.48486 -21.33605 -18.93177 -18.56173 -17.74644 -17.29592 -16.76224 -16.71113 -16.43700 -15.66334 -15.45578 -15.02327 -14.87058 -14.51165 -14.02064 -13.76947 -13.71260 -13.53673 -13.46787 -13.08177 -13.06917 -12.90926 -12.72555 -12.49202 -12.05993 -11.57878 -11.48878 -11.08593 -10.95340 -10.79591 -10.44918 -10.19133 -9.52525 -9.06820 -8.04472 -6.26865 0.61335 1.39413 1.43043 1.52458 1.61760 1.65968 1.96146 2.36505 2.42957 3.15842 3.60978 3.77291 3.96578 4.10924 4.13304 4.36075 4.46863 4.53811 4.64837 4.66246 4.78794 4.88403 4.94247 4.99981 5.13505 5.17219 5.31769 5.43645 5.51730 5.56422 5.62527 5.77047 6.07561 6.16094 6.17743 6.32057 6.49007 6.76994 6.97963 7.25035 7.44730 8.92375 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.003719 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.803828 B = 7526.677233 C = 8257.614715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.223 3.777 4 H 0.011 0.989 5 C -0.562 4.562 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.051 3.949 15 C 0.523 3.477 16 O -0.563 6.563 17 N -0.721 5.721 18 C 0.207 3.793 19 C -0.053 4.053 20 C -0.187 4.187 21 C -0.230 4.230 22 C -0.028 4.028 23 O -0.190 6.190 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.263 0.737 30 H 0.332 0.668 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.413 0.587 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 18.569 -8.206 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.029 0.971 5 C -0.601 4.601 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.303 5.303 14 C -0.082 4.082 15 C 0.310 3.690 16 O -0.441 6.441 17 N -0.375 5.375 18 C 0.084 3.916 19 C -0.102 4.102 20 C -0.207 4.207 21 C -0.249 4.249 22 C -0.095 4.095 23 O -0.087 6.087 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.666 17.720 -8.546 20.772 hybrid contribution 2.206 0.444 0.680 2.351 sum -4.460 18.164 -7.866 20.290 Atomic orbital electron populations 1.21579 0.96601 0.99925 1.00357 1.21374 0.94302 0.98492 1.00016 1.18974 0.91888 0.91608 0.86034 0.97077 1.22179 0.93854 1.38494 1.05535 0.93087 1.25640 1.02051 0.94630 0.95460 1.70000 1.36348 1.38625 1.09785 0.85614 0.81016 0.77681 0.77910 1.19557 1.20529 1.20831 1.60529 1.55433 1.05616 1.08740 1.21680 1.01058 0.90766 0.94651 1.20891 0.76683 0.81784 0.89632 1.90658 1.51397 1.62405 1.39618 1.45974 1.67727 1.06845 1.17000 1.19482 1.01108 0.83160 0.87871 1.22189 0.87025 0.94310 1.06710 1.22001 1.00800 0.92727 1.05162 1.22224 0.96329 0.99494 1.06840 1.24917 0.98959 0.82478 1.03191 1.84045 1.38583 1.20185 1.65867 0.92894 0.93655 0.94610 0.95688 0.91641 0.92806 0.85097 0.88180 0.91962 0.75088 0.88120 0.90637 0.82237 0.81117 0.74472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.85 71.98 0.71 -4.63 16 2 C -0.10 -5.05 5.45 30.60 0.17 -4.89 16 3 C 0.22 11.05 1.97 44.17 0.09 11.14 16 4 H 0.01 0.60 7.70 -2.39 -0.02 0.59 16 5 C -0.56 -29.88 8.47 25.60 0.22 -29.66 16 6 H 0.05 2.69 7.73 -2.91 -0.02 2.67 16 7 C 0.02 1.21 5.29 84.66 0.45 1.66 16 8 N -0.91 -50.87 11.29 21.45 0.24 -50.63 16 9 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.67 -29.19 5.17 -499.46 -2.58 -31.77 16 14 C 0.05 1.83 5.99 85.56 0.51 2.34 16 15 C 0.52 17.18 7.88 87.66 0.69 17.87 16 16 O -0.56 -22.63 16.32 -3.03 -0.05 -22.68 16 17 N -0.72 -17.62 5.55 -466.81 -2.59 -20.21 16 18 C 0.21 4.57 6.20 85.63 0.53 5.11 16 19 C -0.05 -1.05 6.69 24.83 0.17 -0.88 16 20 C -0.19 -3.24 10.81 22.19 0.24 -3.00 16 21 C -0.23 -3.26 10.91 22.19 0.24 -3.02 16 22 C -0.03 -0.38 12.09 66.97 0.81 0.43 16 23 O -0.19 -3.79 10.65 -2.53 -0.03 -3.82 16 24 H 0.05 2.20 7.64 -2.39 -0.02 2.18 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 3.56 5.95 -2.39 -0.01 3.54 16 29 H 0.26 13.98 8.31 -92.72 -0.77 13.21 16 30 H 0.33 14.96 8.29 -89.69 -0.74 14.21 16 31 H 0.10 3.38 7.92 -2.39 -0.02 3.36 16 32 H 0.06 2.19 8.11 -2.38 -0.02 2.17 16 33 H 0.41 8.35 8.46 -92.71 -0.78 7.57 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.24 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -65.18 326.44 1.38 -63.80 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.46 Total: 28.25 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.82 Total: -7.53 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -4.93 Total: -102.61 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.08 Total: -26.50 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.18 1.38 -63.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569619133.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.437 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds