Wall clock time and date at job start Thu Apr 9 2020 13:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 H 1.08999 * 109.47081 * 305.64948 * 3 2 1 5 5 C 1.50696 * 109.46738 * 185.65464 * 3 2 1 6 6 H 1.08008 * 120.00062 * 239.99527 * 5 3 2 7 7 C 1.37880 * 120.00216 * 60.00105 * 5 3 2 8 8 N 1.31514 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00266 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47059 * 59.99379 * 9 7 5 11 11 H 1.48497 * 109.47258 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46800 * 299.99647 * 9 7 5 13 13 N 1.46896 * 109.47332 * 65.65316 * 3 2 1 14 14 C 1.46903 * 111.00151 * 205.41246 * 13 3 2 15 15 C 1.50695 * 109.47493 * 185.22772 * 14 13 3 16 16 O 1.21285 * 119.99554 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99918 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99771 * 179.72862 * 17 15 14 19 19 C 1.50697 * 109.47382 * 180.27942 * 18 17 15 20 20 C 1.34511 * 125.79493 * 89.70939 * 19 18 17 21 21 C 1.41384 * 106.84289 * 179.89428 * 20 19 18 22 22 C 1.34510 * 106.83901 * 0.37135 * 21 20 19 23 23 O 1.34307 * 125.78393 * 270.02630 * 19 18 17 24 24 H 1.09006 * 109.46731 * 55.51246 * 1 2 3 25 25 H 1.08992 * 109.47045 * 175.51620 * 1 2 3 26 26 H 1.08996 * 109.47094 * 295.52012 * 1 2 3 27 27 H 1.09000 * 109.47034 * 239.99790 * 2 1 3 28 28 H 1.08997 * 109.46721 * 119.99777 * 2 1 3 29 29 H 0.97004 * 119.99600 * 179.97438 * 8 7 5 30 30 H 1.00897 * 111.00374 * 329.36877 * 13 3 2 31 31 H 1.09004 * 109.46737 * 65.23055 * 14 13 3 32 32 H 1.08996 * 109.47356 * 305.23474 * 14 13 3 33 33 H 0.97000 * 120.00155 * 0.02562 * 17 15 14 34 34 H 1.09005 * 109.47162 * 300.27718 * 18 17 15 35 35 H 1.09000 * 109.47471 * 60.27204 * 18 17 15 36 36 H 1.08002 * 126.57468 * 0.03153 * 20 19 18 37 37 H 1.07997 * 126.58020 * 180.17094 * 21 20 19 38 38 H 1.07997 * 125.78851 * 179.74996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1400 6 1 4.1542 1.8865 0.6313 7 6 4.1299 0.8831 -1.2527 8 7 3.3827 0.3449 -2.1916 9 14 5.9899 0.8852 -1.4259 10 1 6.5938 0.1461 -0.2883 11 1 6.3691 0.2257 -2.7012 12 1 6.4854 2.2851 -1.4256 13 7 1.6650 2.0945 1.2618 14 6 1.5748 3.5513 1.0951 15 6 1.3154 4.1949 2.4328 16 8 1.2160 3.5077 3.4272 17 7 1.1939 5.5340 2.5241 18 6 0.9359 6.1592 3.8237 19 6 0.8372 7.6531 3.6517 20 6 -0.2874 8.3419 3.3868 21 6 0.0763 9.7061 3.3105 22 6 1.4027 9.7684 3.5251 23 8 1.8583 8.5219 3.7312 24 1 -0.3633 0.5819 -0.8471 25 1 -0.3633 -1.0244 -0.0803 26 1 -0.3633 0.4427 0.9274 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7974 -0.0499 -2.9746 30 1 0.8007 1.7175 1.6207 31 1 0.7583 3.7891 0.4132 32 1 2.5117 3.9289 0.6858 33 1 1.2731 6.0835 1.7287 34 1 -0.0006 5.7777 4.2308 35 1 1.7515 5.9252 4.5078 36 1 -1.2783 7.9318 3.2593 37 1 -0.5837 10.5381 3.1140 38 1 2.0000 10.6681 3.5304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569619134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:26 Heat of formation + Delta-G solvation = -21.410688 kcal Electronic energy + Delta-G solvation = -19573.581523 eV Core-core repulsion = 16417.834973 eV Total energy + Delta-G solvation = -3155.746549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.83348 -39.31340 -36.15780 -34.87595 -33.20409 -32.45168 -31.26385 -30.46780 -27.46639 -26.19815 -24.43959 -22.50332 -22.01962 -20.81847 -20.21476 -19.57659 -17.86338 -16.64248 -16.41073 -16.29143 -15.59876 -15.36129 -14.79451 -14.59275 -13.99212 -13.73902 -13.52271 -13.10024 -13.01813 -12.86987 -12.52544 -12.22482 -12.11031 -11.94667 -11.29342 -11.11616 -10.83262 -10.63652 -10.22376 -9.97754 -9.94174 -9.62829 -9.43842 -9.09750 -9.03662 -8.76654 -8.33685 -7.22909 -5.96390 -4.00789 1.35509 2.29355 2.68136 3.00327 3.35318 3.39460 3.43517 3.47344 4.34691 4.45910 4.74369 4.77949 5.11608 5.19256 5.30782 5.42727 5.50322 5.52881 5.66556 5.80266 5.91799 6.10579 6.19719 6.19981 6.22603 6.42591 6.44541 6.85955 6.87008 7.06873 7.17268 7.43032 7.61967 7.79259 7.92376 8.25565 8.38189 8.53084 8.75466 9.07179 9.64379 11.08798 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.003794 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.191884 B = 7379.209897 C = 8172.502373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.670 5.670 14 C 0.053 3.947 15 C 0.516 3.484 16 O -0.525 6.525 17 N -0.739 5.739 18 C 0.203 3.797 19 C -0.030 4.030 20 C -0.189 4.189 21 C -0.219 4.219 22 C -0.033 4.033 23 O -0.171 6.171 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.101 0.899 28 H 0.043 0.957 29 H 0.260 0.740 30 H 0.326 0.674 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.402 0.598 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 16.496 7.644 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.303 5.303 14 C -0.080 4.080 15 C 0.303 3.697 16 O -0.399 6.399 17 N -0.395 5.395 18 C 0.080 3.920 19 C -0.081 4.081 20 C -0.209 4.209 21 C -0.238 4.238 22 C -0.101 4.101 23 O -0.066 6.066 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.119 0.881 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.236 0.764 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.595 15.779 8.497 19.096 hybrid contribution -0.004 0.676 -1.118 1.306 sum -6.598 16.455 7.379 19.203 Atomic orbital electron populations 1.21890 0.99568 0.99806 0.99584 1.21762 0.91283 1.00099 1.03243 1.19195 0.95589 0.90187 0.83722 0.97935 1.21199 0.91239 1.36848 1.04217 0.92038 1.24954 0.98141 0.95540 0.95818 1.69864 1.34794 1.39389 1.09569 0.86593 0.85706 0.78138 0.77136 1.20256 1.21465 1.20446 1.60366 1.37504 0.99711 1.32715 1.21701 1.02388 0.92654 0.91276 1.21229 0.75130 0.80902 0.92456 1.90672 1.48491 1.62331 1.38390 1.46159 1.75876 1.07717 1.09769 1.19513 1.03596 0.81676 0.87247 1.22417 0.85949 0.92384 1.07302 1.21712 0.99483 0.93420 1.06272 1.21877 0.95796 0.97620 1.08485 1.24127 0.95304 0.86083 1.04609 1.84071 1.36796 1.16214 1.69532 0.93913 0.94288 0.94512 0.88116 0.93828 0.93005 0.85521 0.93705 0.87729 0.76385 0.88563 0.89867 0.83172 0.83291 0.77970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.67 37.16 0.36 -2.59 16 2 C -0.13 -2.98 5.36 -26.73 -0.14 -3.12 16 3 C 0.22 5.45 2.02 -68.87 -0.14 5.31 16 4 H 0.00 0.08 7.85 -51.93 -0.41 -0.33 16 5 C -0.50 -13.66 8.56 -34.44 -0.29 -13.96 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.23 11.29 55.43 0.63 -24.60 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -14.75 5.83 -109.23 -0.64 -15.39 16 14 C 0.05 0.97 5.93 -4.98 -0.03 0.94 16 15 C 0.52 8.74 7.88 -10.99 -0.09 8.66 16 16 O -0.52 -10.73 16.32 5.55 0.09 -10.64 16 17 N -0.74 -9.50 5.55 -61.47 -0.34 -9.85 16 18 C 0.20 2.34 6.20 -5.19 -0.03 2.31 16 19 C -0.03 -0.32 6.69 -35.63 -0.24 -0.56 16 20 C -0.19 -1.78 10.81 -39.70 -0.43 -2.21 16 21 C -0.22 -1.82 10.91 -39.70 -0.43 -2.25 16 22 C -0.03 -0.27 12.09 29.41 0.36 0.08 16 23 O -0.17 -1.88 10.65 5.69 0.06 -1.82 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.66 6.61 -51.93 -0.34 0.32 16 27 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 28 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.33 6.87 6.47 -39.29 -0.25 6.61 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.98 7.93 -51.93 -0.41 1.57 16 33 H 0.40 4.38 8.46 -40.82 -0.35 4.03 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.20 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -31.70 324.31 -6.96 -38.67 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.42 Total: 8.26 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.21 Total: -5.96 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.35 Total: -49.84 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.15 Total: -12.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.70 -6.96 -38.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569619134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.255 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds