Wall clock time and date at job start Thu Apr 9 2020 13:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 H 1.08999 * 109.47081 * 305.64948 * 3 2 1 5 5 C 1.50696 * 109.46738 * 185.65464 * 3 2 1 6 6 H 1.08008 * 120.00062 * 239.99527 * 5 3 2 7 7 C 1.37880 * 120.00216 * 60.00105 * 5 3 2 8 8 N 1.31514 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00266 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47059 * 59.99379 * 9 7 5 11 11 H 1.48497 * 109.47258 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46800 * 299.99647 * 9 7 5 13 13 N 1.46896 * 109.47332 * 65.65316 * 3 2 1 14 14 C 1.46903 * 111.00151 * 205.41246 * 13 3 2 15 15 C 1.50695 * 109.47493 * 185.22772 * 14 13 3 16 16 O 1.21285 * 119.99554 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99918 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99771 * 179.72862 * 17 15 14 19 19 C 1.50697 * 109.47382 * 180.27942 * 18 17 15 20 20 C 1.34511 * 125.79493 * 89.70939 * 19 18 17 21 21 C 1.41384 * 106.84289 * 179.89428 * 20 19 18 22 22 C 1.34510 * 106.83901 * 0.37135 * 21 20 19 23 23 O 1.34307 * 125.78393 * 270.02630 * 19 18 17 24 24 H 1.09006 * 109.46731 * 55.51246 * 1 2 3 25 25 H 1.08992 * 109.47045 * 175.51620 * 1 2 3 26 26 H 1.08996 * 109.47094 * 295.52012 * 1 2 3 27 27 H 1.09000 * 109.47034 * 239.99790 * 2 1 3 28 28 H 1.08997 * 109.46721 * 119.99777 * 2 1 3 29 29 H 0.97004 * 119.99600 * 179.97438 * 8 7 5 30 30 H 1.00897 * 111.00374 * 329.36877 * 13 3 2 31 31 H 1.09004 * 109.46737 * 65.23055 * 14 13 3 32 32 H 1.08996 * 109.47356 * 305.23474 * 14 13 3 33 33 H 0.97000 * 120.00155 * 0.02562 * 17 15 14 34 34 H 1.09005 * 109.47162 * 300.27718 * 18 17 15 35 35 H 1.09000 * 109.47471 * 60.27204 * 18 17 15 36 36 H 1.08002 * 126.57468 * 0.03153 * 20 19 18 37 37 H 1.07997 * 126.58020 * 180.17094 * 21 20 19 38 38 H 1.07997 * 125.78851 * 179.74996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1400 6 1 4.1542 1.8865 0.6313 7 6 4.1299 0.8831 -1.2527 8 7 3.3827 0.3449 -2.1916 9 14 5.9899 0.8852 -1.4259 10 1 6.5938 0.1461 -0.2883 11 1 6.3691 0.2257 -2.7012 12 1 6.4854 2.2851 -1.4256 13 7 1.6650 2.0945 1.2618 14 6 1.5748 3.5513 1.0951 15 6 1.3154 4.1949 2.4328 16 8 1.2160 3.5077 3.4272 17 7 1.1939 5.5340 2.5241 18 6 0.9359 6.1592 3.8237 19 6 0.8372 7.6531 3.6517 20 6 -0.2874 8.3419 3.3868 21 6 0.0763 9.7061 3.3105 22 6 1.4027 9.7684 3.5251 23 8 1.8583 8.5219 3.7312 24 1 -0.3633 0.5819 -0.8471 25 1 -0.3633 -1.0244 -0.0803 26 1 -0.3633 0.4427 0.9274 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7974 -0.0499 -2.9746 30 1 0.8007 1.7175 1.6207 31 1 0.7583 3.7891 0.4132 32 1 2.5117 3.9289 0.6858 33 1 1.2731 6.0835 1.7287 34 1 -0.0006 5.7777 4.2308 35 1 1.7515 5.9252 4.5078 36 1 -1.2783 7.9318 3.2593 37 1 -0.5837 10.5381 3.1140 38 1 2.0000 10.6681 3.5304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569619134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:24 Heat of formation + Delta-G solvation = -44.016042 kcal Electronic energy + Delta-G solvation = -19574.561764 eV Core-core repulsion = 16417.834973 eV Total energy + Delta-G solvation = -3156.726791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.54769 -40.67622 -37.94047 -36.06706 -34.40307 -33.92715 -32.95673 -31.47278 -29.09368 -27.60791 -25.86827 -24.28503 -22.70683 -21.66866 -21.51048 -21.36663 -18.75378 -18.40459 -17.76451 -17.36432 -16.80754 -16.75397 -16.45210 -15.86573 -15.54629 -15.07675 -14.85771 -14.51279 -14.03974 -13.85149 -13.76443 -13.59664 -13.52258 -13.14284 -13.02092 -12.80924 -12.74340 -12.52395 -11.96825 -11.74073 -11.50101 -11.06747 -10.97943 -10.81454 -10.41454 -10.20408 -9.52831 -9.00596 -8.05596 -6.17605 0.61088 1.43374 1.45502 1.52980 1.61376 1.64138 1.96203 2.35724 2.46317 3.19645 3.60459 3.72924 3.92771 4.11093 4.12811 4.35185 4.44893 4.52055 4.52988 4.58128 4.62638 4.74413 4.88250 5.00013 5.10669 5.13322 5.23796 5.30163 5.36811 5.56896 5.57554 5.75032 5.88494 6.16332 6.30730 6.39298 6.56563 6.92574 6.95121 7.23316 7.51342 8.97227 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.003794 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.191884 B = 7379.209897 C = 8172.502373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.227 3.773 4 H -0.017 1.017 5 C -0.517 4.517 6 H 0.047 0.953 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.681 5.681 14 C 0.052 3.948 15 C 0.523 3.477 16 O -0.563 6.563 17 N -0.720 5.720 18 C 0.206 3.794 19 C -0.054 4.054 20 C -0.184 4.184 21 C -0.229 4.229 22 C -0.030 4.030 23 O -0.193 6.193 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.413 0.587 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 18.214 7.764 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.120 3.880 4 H 0.000 1.000 5 C -0.555 4.555 6 H 0.065 0.935 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.197 1.197 13 N -0.315 5.315 14 C -0.080 4.080 15 C 0.310 3.690 16 O -0.441 6.441 17 N -0.375 5.375 18 C 0.083 3.917 19 C -0.104 4.104 20 C -0.204 4.204 21 C -0.248 4.248 22 C -0.097 4.097 23 O -0.089 6.089 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.249 0.751 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.181 0.819 37 H 0.190 0.810 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.107 17.547 8.610 20.798 hybrid contribution 0.128 0.265 -1.141 1.179 sum -6.979 17.813 7.468 20.537 Atomic orbital electron populations 1.21752 0.96192 1.01285 1.00466 1.21608 0.94334 0.98968 1.01177 1.18968 0.94139 0.90772 0.84158 0.99983 1.21435 0.92811 1.37170 1.04128 0.93508 1.25626 1.02128 0.95164 0.95527 1.69977 1.36243 1.39621 1.09805 0.85677 0.80898 0.78323 0.77077 1.20381 1.20750 1.19747 1.60217 1.38135 1.01808 1.31298 1.21699 1.02851 0.90695 0.92792 1.20866 0.74974 0.81978 0.91190 1.90658 1.50724 1.63513 1.39200 1.45967 1.73991 1.06419 1.11102 1.19498 1.03520 0.82717 0.85937 1.22202 0.86531 0.91840 1.09793 1.22003 0.99611 0.94080 1.04725 1.22229 0.96307 0.97752 1.08491 1.24916 0.95979 0.86004 1.02807 1.84053 1.37412 1.17318 1.70124 0.93844 0.92394 0.92864 0.90949 0.94975 0.92945 0.84923 0.91405 0.88634 0.75059 0.87755 0.90982 0.81942 0.81003 0.74607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.67 71.98 0.70 -4.61 16 2 C -0.12 -5.86 5.36 30.60 0.16 -5.70 16 3 C 0.23 11.42 2.02 44.17 0.09 11.50 16 4 H -0.02 -0.93 7.85 -2.39 -0.02 -0.94 16 5 C -0.52 -28.92 8.56 25.60 0.22 -28.70 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.07 11.29 21.45 0.24 -51.83 16 9 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.68 -30.13 5.83 -499.48 -2.91 -33.05 16 14 C 0.05 1.90 5.93 85.55 0.51 2.41 16 15 C 0.52 17.52 7.88 87.66 0.69 18.21 16 16 O -0.56 -23.05 16.32 -3.05 -0.05 -23.10 16 17 N -0.72 -17.89 5.55 -466.78 -2.59 -20.48 16 18 C 0.21 4.62 6.20 85.63 0.53 5.15 16 19 C -0.05 -1.08 6.69 24.83 0.17 -0.92 16 20 C -0.18 -3.11 10.81 22.19 0.24 -2.87 16 21 C -0.23 -3.20 10.91 22.19 0.24 -2.96 16 22 C -0.03 -0.41 12.09 66.97 0.81 0.40 16 23 O -0.19 -3.98 10.65 -2.57 -0.03 -4.01 16 24 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 1.84 6.61 -2.39 -0.02 1.82 16 27 H 0.07 3.89 5.94 -2.39 -0.01 3.88 16 28 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.33 13.86 6.47 -89.70 -0.58 13.28 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 3.64 7.93 -2.39 -0.02 3.62 16 33 H 0.41 8.48 8.46 -92.71 -0.78 7.70 16 34 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.24 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -68.38 324.31 1.20 -67.17 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.29 Total: 25.93 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 4.80 Total: -6.85 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -5.26 Total: -105.36 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.08 Total: -27.10 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.38 1.20 -67.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569619134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.159 kcal (2) G-P(sol) polarization free energy of solvation -68.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds