Wall clock time and date at job start Thu Apr 9 2020 13:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47304 * 2 1 4 4 N 1.46507 * 109.47088 * 120.00138 * 2 1 3 5 5 C 1.46499 * 119.99799 * 119.20509 * 4 2 1 6 6 C 1.50698 * 109.47473 * 269.99730 * 5 4 2 7 7 H 1.08006 * 119.99687 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00273 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99714 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00245 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47180 * 90.00083 * 10 8 6 12 12 H 1.48501 * 109.47033 * 210.00439 * 10 8 6 13 13 H 1.48501 * 109.47120 * 330.00126 * 10 8 6 14 14 C 1.34770 * 119.99926 * 299.21095 * 4 2 1 15 15 O 1.21281 * 120.00133 * 5.30521 * 14 4 2 16 16 C 1.50697 * 120.00386 * 185.31467 * 14 4 2 17 17 C 1.52993 * 109.47885 * 177.82164 * 16 14 4 18 18 C 1.50692 * 109.47661 * 179.97438 * 17 16 14 19 19 C 1.41384 * 126.80557 * 124.71016 * 18 17 16 20 20 C 1.35442 * 103.98502 * 180.26431 * 19 18 17 21 21 O 1.34038 * 106.45092 * 359.97438 * 20 19 18 22 22 N 1.20916 * 111.56600 * 0.02562 * 21 20 19 23 23 H 1.09007 * 109.47244 * 306.61669 * 1 2 3 24 24 H 1.09006 * 109.47496 * 66.61689 * 1 2 3 25 25 H 1.09004 * 109.47444 * 186.62065 * 1 2 3 26 26 H 1.09007 * 109.46925 * 239.99282 * 2 1 3 27 27 H 1.09006 * 109.47244 * 173.89018 * 3 2 1 28 28 H 1.09002 * 109.46984 * 293.88477 * 3 2 1 29 29 H 1.08998 * 109.47275 * 53.89178 * 3 2 1 30 30 H 1.08999 * 109.47618 * 30.00613 * 5 4 2 31 31 H 1.09000 * 109.46691 * 149.99930 * 5 4 2 32 32 H 0.97008 * 119.99519 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.47393 * 57.81275 * 16 14 4 34 34 H 1.09007 * 109.46576 * 297.82220 * 16 14 4 35 35 H 1.09006 * 109.47331 * 59.99073 * 17 16 14 36 36 H 1.09001 * 109.46749 * 300.00083 * 17 16 14 37 37 H 1.07998 * 128.00346 * 0.23767 * 19 18 17 38 38 H 1.08008 * 126.77526 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8461 -1.8919 1.0618 6 6 1.9608 -3.1109 1.0271 7 1 0.8886 -3.0017 1.0977 8 6 2.5194 -4.3654 0.9042 9 7 3.8250 -4.4982 0.8178 10 14 1.4219 -5.8763 0.8605 11 1 1.0490 -6.1768 -0.5451 12 1 2.1507 -7.0343 1.4377 13 1 0.1935 -5.6191 1.6544 14 6 1.7059 -0.2210 2.4202 15 8 0.9429 0.7148 2.5341 16 6 2.3047 -0.8585 3.6474 17 6 1.8332 -0.1075 4.8941 18 6 2.4315 -0.7454 6.1212 19 6 3.2016 -0.1047 7.1189 20 6 3.5010 -1.0981 7.9896 21 8 2.9336 -2.2115 7.5048 22 7 2.3461 -1.9967 6.4701 23 1 -0.3634 0.6130 0.8249 24 1 -0.3634 0.4079 -0.9433 25 1 -0.3634 -1.0208 0.1185 26 1 1.8933 -0.5140 -0.8900 27 1 3.1245 1.4444 0.1094 28 1 1.7688 1.9237 -0.9397 29 1 1.5901 1.9869 0.8302 30 1 3.4222 -1.8347 0.1382 31 1 3.5265 -1.9610 1.9106 32 1 4.2180 -5.3809 0.7317 33 1 3.3921 -0.8142 3.5860 34 1 1.9864 -1.8993 3.7081 35 1 0.7457 -0.1518 4.9554 36 1 2.1514 0.9333 4.8333 37 1 3.4857 0.9358 7.1738 38 1 4.0823 -1.0104 8.8956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597037277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:31 Heat of formation + Delta-G solvation = 11.663603 kcal Electronic energy + Delta-G solvation = -20521.144583 eV Core-core repulsion = 17366.832243 eV Total energy + Delta-G solvation = -3154.312340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.79023 -39.37562 -35.70582 -34.85192 -33.22198 -32.06773 -31.50459 -30.42098 -26.99377 -26.58899 -25.16147 -23.01675 -22.82635 -21.55361 -20.29763 -18.05973 -17.58125 -17.33978 -16.59701 -15.96968 -15.38722 -15.03036 -14.61217 -14.37455 -13.69103 -13.53198 -13.20800 -12.92638 -12.51125 -12.30701 -12.18766 -11.79676 -11.72305 -11.54292 -11.41049 -11.22218 -10.92394 -10.86324 -10.70774 -10.51852 -10.35986 -10.02828 -9.88161 -9.67322 -9.50731 -8.76913 -8.51518 -7.66788 -6.15258 -4.22233 1.62796 2.37977 3.25845 3.32848 3.36146 3.38507 3.46485 3.93942 4.35488 4.39497 4.67831 5.17903 5.21989 5.30325 5.37672 5.49516 5.55787 5.68534 5.72510 5.79010 5.88927 6.00982 6.09837 6.19416 6.24557 6.34918 6.38266 6.48069 6.57513 6.75304 6.84182 6.90039 7.20958 7.62613 7.80473 8.09112 8.40397 8.45363 8.83236 9.07262 9.45967 10.91487 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.007167 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.459712 B = 3905.670137 C = 5620.161698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.163 4.163 4 N -0.592 5.592 5 C 0.237 3.763 6 C -0.536 4.536 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.522 3.478 15 O -0.573 6.573 16 C -0.131 4.131 17 C -0.024 4.024 18 C 0.021 3.979 19 C -0.232 4.232 20 C -0.069 4.069 21 O 0.099 5.901 22 N -0.355 5.355 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.169 0.831 38 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 8.961 8.682 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.322 5.322 5 C 0.117 3.883 6 C -0.574 4.574 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.310 3.690 15 O -0.456 6.456 16 C -0.172 4.172 17 C -0.062 4.062 18 C -0.138 4.138 19 C -0.254 4.254 20 C -0.151 4.151 21 O 0.032 5.968 22 N -0.058 5.058 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.187 0.813 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.189 8.201 8.146 11.561 hybrid contribution 0.041 -0.290 0.102 0.310 sum -0.149 7.911 8.248 11.430 Atomic orbital electron populations 1.22167 0.95665 1.02588 1.01634 1.20822 0.94282 0.92188 0.88331 1.22177 1.00800 0.97047 1.02133 1.48330 1.51188 1.28484 1.04235 1.19463 0.90078 0.80432 0.98359 1.21493 0.93772 0.90789 1.51364 0.92104 1.24933 0.95051 0.99057 0.94730 1.69924 1.09729 1.23939 1.49445 0.86526 0.80677 0.82219 0.78292 1.20548 1.21031 1.19724 1.20292 0.80979 0.82800 0.84893 1.90525 1.37335 1.30674 1.87028 1.21569 1.01839 1.02290 0.91453 1.19754 1.00832 0.98494 0.87162 1.23808 1.00422 0.89876 0.99724 1.22755 1.04465 1.02125 0.96038 1.25976 1.01549 0.85698 1.01891 1.84872 1.49675 1.33795 1.28491 1.73927 1.14428 1.18638 0.98810 0.90834 0.93258 0.92465 0.90014 0.93172 0.92711 0.90997 0.94802 0.94393 0.92573 0.89469 0.87468 0.89412 0.89431 0.81316 0.77056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.01 37.15 0.33 -2.61 16 2 C 0.15 2.78 3.28 -67.93 -0.22 2.55 16 3 C -0.16 -2.67 9.01 37.15 0.33 -2.34 16 4 N -0.59 -12.53 2.41 -167.47 -0.40 -12.93 16 5 C 0.24 5.70 4.99 -5.19 -0.03 5.67 16 6 C -0.54 -14.25 9.39 -34.44 -0.32 -14.57 16 7 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 10 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.52 10.71 7.08 -10.99 -0.08 10.63 16 15 O -0.57 -12.11 12.37 5.56 0.07 -12.05 16 16 C -0.13 -2.47 4.16 -27.89 -0.12 -2.58 16 17 C -0.02 -0.38 5.10 -27.89 -0.14 -0.53 16 18 C 0.02 0.32 6.59 -82.10 -0.54 -0.22 16 19 C -0.23 -2.68 11.12 -39.38 -0.44 -3.12 16 20 C -0.07 -0.70 12.30 29.73 0.37 -0.34 16 21 O 0.10 1.40 11.20 17.18 0.19 1.60 16 22 N -0.35 -6.06 12.06 33.42 0.40 -5.65 16 23 H 0.07 1.41 6.27 -51.93 -0.33 1.08 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.54 7.79 -51.92 -0.40 1.13 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.26 6.47 -51.93 -0.34 0.93 16 30 H 0.03 0.85 7.91 -51.93 -0.41 0.44 16 31 H 0.04 0.95 6.39 -51.93 -0.33 0.61 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.09 1.59 7.48 -51.93 -0.39 1.21 16 34 H 0.11 2.29 8.10 -51.93 -0.42 1.86 16 35 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 36 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 37 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.21 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -30.38 321.07 -5.67 -36.05 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.54 Total: 2.03 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.95 Total: -5.77 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.74 Total: -42.94 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.26 Total: -10.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.38 -5.67 -36.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597037277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.713 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds