Wall clock time and date at job start Thu Apr 9 2020 13:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47304 * 2 1 4 4 N 1.46507 * 109.47088 * 120.00138 * 2 1 3 5 5 C 1.46499 * 119.99799 * 119.20509 * 4 2 1 6 6 C 1.50698 * 109.47473 * 269.99730 * 5 4 2 7 7 H 1.08006 * 119.99687 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00273 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99714 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00245 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47180 * 90.00083 * 10 8 6 12 12 H 1.48501 * 109.47033 * 210.00439 * 10 8 6 13 13 H 1.48501 * 109.47120 * 330.00126 * 10 8 6 14 14 C 1.34770 * 119.99926 * 299.21095 * 4 2 1 15 15 O 1.21281 * 120.00133 * 5.30521 * 14 4 2 16 16 C 1.50697 * 120.00386 * 185.31467 * 14 4 2 17 17 C 1.52993 * 109.47885 * 177.82164 * 16 14 4 18 18 C 1.50692 * 109.47661 * 179.97438 * 17 16 14 19 19 C 1.41384 * 126.80557 * 124.71016 * 18 17 16 20 20 C 1.35442 * 103.98502 * 180.26431 * 19 18 17 21 21 O 1.34038 * 106.45092 * 359.97438 * 20 19 18 22 22 N 1.20916 * 111.56600 * 0.02562 * 21 20 19 23 23 H 1.09007 * 109.47244 * 306.61669 * 1 2 3 24 24 H 1.09006 * 109.47496 * 66.61689 * 1 2 3 25 25 H 1.09004 * 109.47444 * 186.62065 * 1 2 3 26 26 H 1.09007 * 109.46925 * 239.99282 * 2 1 3 27 27 H 1.09006 * 109.47244 * 173.89018 * 3 2 1 28 28 H 1.09002 * 109.46984 * 293.88477 * 3 2 1 29 29 H 1.08998 * 109.47275 * 53.89178 * 3 2 1 30 30 H 1.08999 * 109.47618 * 30.00613 * 5 4 2 31 31 H 1.09000 * 109.46691 * 149.99930 * 5 4 2 32 32 H 0.97008 * 119.99519 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.47393 * 57.81275 * 16 14 4 34 34 H 1.09007 * 109.46576 * 297.82220 * 16 14 4 35 35 H 1.09006 * 109.47331 * 59.99073 * 17 16 14 36 36 H 1.09001 * 109.46749 * 300.00083 * 17 16 14 37 37 H 1.07998 * 128.00346 * 0.23767 * 19 18 17 38 38 H 1.08008 * 126.77526 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8461 -1.8919 1.0618 6 6 1.9608 -3.1109 1.0271 7 1 0.8886 -3.0017 1.0977 8 6 2.5194 -4.3654 0.9042 9 7 3.8250 -4.4982 0.8178 10 14 1.4219 -5.8763 0.8605 11 1 1.0490 -6.1768 -0.5451 12 1 2.1507 -7.0343 1.4377 13 1 0.1935 -5.6191 1.6544 14 6 1.7059 -0.2210 2.4202 15 8 0.9429 0.7148 2.5341 16 6 2.3047 -0.8585 3.6474 17 6 1.8332 -0.1075 4.8941 18 6 2.4315 -0.7454 6.1212 19 6 3.2016 -0.1047 7.1189 20 6 3.5010 -1.0981 7.9896 21 8 2.9336 -2.2115 7.5048 22 7 2.3461 -1.9967 6.4701 23 1 -0.3634 0.6130 0.8249 24 1 -0.3634 0.4079 -0.9433 25 1 -0.3634 -1.0208 0.1185 26 1 1.8933 -0.5140 -0.8900 27 1 3.1245 1.4444 0.1094 28 1 1.7688 1.9237 -0.9397 29 1 1.5901 1.9869 0.8302 30 1 3.4222 -1.8347 0.1382 31 1 3.5265 -1.9610 1.9106 32 1 4.2180 -5.3809 0.7317 33 1 3.3921 -0.8142 3.5860 34 1 1.9864 -1.8993 3.7081 35 1 0.7457 -0.1518 4.9554 36 1 2.1514 0.9333 4.8333 37 1 3.4857 0.9358 7.1738 38 1 4.0823 -1.0104 8.8956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597037277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:29 Heat of formation + Delta-G solvation = -5.971352 kcal Electronic energy + Delta-G solvation = -20521.909292 eV Core-core repulsion = 17366.832243 eV Total energy + Delta-G solvation = -3155.077049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -45.85963 -41.02942 -37.25112 -36.21887 -35.06358 -33.59253 -32.71441 -31.78880 -28.95041 -28.00498 -26.57932 -24.79757 -24.02474 -22.97534 -21.45033 -19.65532 -18.73396 -18.59652 -18.47071 -17.63989 -16.96787 -16.59160 -16.26796 -15.77954 -15.07515 -14.95183 -14.55536 -14.29650 -14.04183 -13.95704 -13.67842 -13.35751 -13.23607 -13.12557 -12.88142 -12.75470 -12.68880 -12.52621 -12.19508 -12.12033 -11.89800 -11.76706 -11.65684 -10.96013 -10.65591 -10.52240 -10.34276 -9.43274 -8.23940 -6.38015 0.71749 1.34107 1.35949 1.38240 1.47500 1.77164 2.29097 2.41909 2.58768 3.06071 3.28373 3.58607 3.85129 4.06966 4.15327 4.24236 4.29159 4.34337 4.40853 4.57837 4.64942 4.72243 4.79703 4.81841 4.93988 4.98590 5.02180 5.03628 5.11914 5.15306 5.23851 5.32172 5.42802 5.64480 5.93811 6.03808 6.57092 6.81502 7.29656 7.41748 7.46900 8.81326 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.007167 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.459712 B = 3905.670137 C = 5620.161698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 C -0.151 4.151 4 N -0.597 5.597 5 C 0.253 3.747 6 C -0.544 4.544 7 H 0.048 0.952 8 C 0.022 3.978 9 N -0.919 5.919 10 Si 0.952 3.048 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.518 3.482 15 O -0.577 6.577 16 C -0.122 4.122 17 C -0.013 4.013 18 C -0.003 4.003 19 C -0.236 4.236 20 C -0.048 4.048 21 O 0.088 5.912 22 N -0.404 5.404 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.022 0.978 31 H 0.026 0.974 32 H 0.268 0.732 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.200 0.800 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 9.945 9.429 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 C -0.209 4.209 4 N -0.327 5.327 5 C 0.132 3.868 6 C -0.583 4.583 7 H 0.067 0.933 8 C -0.179 4.179 9 N -0.558 5.558 10 Si 0.778 3.222 11 H -0.195 1.195 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.308 3.692 15 O -0.459 6.459 16 C -0.162 4.162 17 C -0.052 4.052 18 C -0.161 4.161 19 C -0.258 4.258 20 C -0.128 4.128 21 O 0.022 5.978 22 N -0.109 5.109 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.218 0.782 38 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 0.082 9.203 8.886 12.793 hybrid contribution -0.025 -0.552 -0.089 0.559 sum 0.057 8.651 8.798 12.339 Atomic orbital electron populations 1.22072 0.95064 1.01042 1.02906 1.21110 0.94823 0.93554 0.87309 1.22060 1.00545 0.95008 1.03269 1.48339 1.51073 1.27881 1.05451 1.19073 0.89739 0.80984 0.97044 1.21667 0.93417 0.92047 1.51174 0.93334 1.25623 0.96211 1.01586 0.94440 1.70002 1.10948 1.24679 1.50164 0.85639 0.78859 0.79144 0.78596 1.19486 1.20461 1.20092 1.20546 0.80834 0.82748 0.85112 1.90514 1.37408 1.30888 1.87117 1.21457 1.01773 1.00717 0.92297 1.19616 1.00088 0.99070 0.86390 1.23941 1.01607 0.90174 1.00367 1.23132 1.03809 1.03875 0.94950 1.26974 0.99667 0.83716 1.02492 1.84804 1.49759 1.35437 1.27832 1.73931 1.16492 1.19996 1.00491 0.92015 0.90001 0.94776 0.90155 0.93162 0.89654 0.92195 0.96038 0.95563 0.92321 0.89305 0.90560 0.90692 0.87607 0.78248 0.71773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 9.01 71.98 0.65 -4.78 16 2 C 0.13 5.01 3.28 44.99 0.15 5.16 16 3 C -0.15 -4.69 9.01 71.98 0.65 -4.04 16 4 N -0.60 -25.67 2.41 -802.16 -1.93 -27.60 16 5 C 0.25 12.51 4.99 85.63 0.43 12.94 16 6 C -0.54 -29.64 9.39 25.60 0.24 -29.40 16 7 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 8 C 0.02 1.19 5.46 84.65 0.46 1.65 16 9 N -0.92 -52.25 13.29 21.45 0.28 -51.97 16 10 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.52 21.64 7.08 87.66 0.62 22.26 16 15 O -0.58 -24.38 12.37 -3.03 -0.04 -24.42 16 16 C -0.12 -4.74 4.16 29.84 0.12 -4.61 16 17 C -0.01 -0.43 5.10 29.84 0.15 -0.28 16 18 C 0.00 -0.09 6.59 43.58 0.29 0.19 16 19 C -0.24 -4.89 11.12 22.40 0.25 -4.64 16 20 C -0.05 -0.83 12.30 67.17 0.83 0.00 16 21 O 0.09 2.43 11.20 71.66 0.80 3.23 16 22 N -0.40 -13.99 12.06 -49.56 -0.60 -14.59 16 23 H 0.06 2.33 6.27 -2.38 -0.01 2.32 16 24 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 2.99 7.79 -2.38 -0.02 2.97 16 27 H 0.05 1.54 8.14 -2.38 -0.02 1.53 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 2.02 6.47 -2.39 -0.02 2.00 16 30 H 0.02 1.11 7.91 -2.39 -0.02 1.09 16 31 H 0.03 1.36 6.39 -2.39 -0.02 1.34 16 32 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 33 H 0.09 3.36 7.48 -2.38 -0.02 3.34 16 34 H 0.08 3.45 8.10 -2.38 -0.02 3.43 16 35 H 0.07 2.57 8.08 -2.38 -0.02 2.55 16 36 H 0.11 2.96 8.12 -2.39 -0.02 2.94 16 37 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.27 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -67.00 321.07 6.43 -60.58 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.04 Total: 14.37 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 4.83 Total: -5.55 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -2.24 Total: -94.16 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.76 Total: -21.19 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.00 6.43 -60.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597037277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.606 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds