Wall clock time and date at job start Thu Apr 9 2020 13:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46702 * 2 1 4 4 C 1.50702 * 109.46996 * 120.00283 * 2 1 3 5 5 H 1.07998 * 119.99943 * 120.00563 * 4 2 1 6 6 C 1.37874 * 119.99576 * 300.00150 * 4 2 1 7 7 N 1.31515 * 120.00619 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99785 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46874 * 60.00054 * 8 6 4 10 10 H 1.48492 * 109.47312 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46995 * 300.00316 * 8 6 4 12 12 C 1.50700 * 109.47152 * 240.00456 * 2 1 3 13 13 O 1.21291 * 119.99518 * 267.72863 * 12 2 1 14 14 N 1.34770 * 120.00336 * 87.45577 * 12 2 1 15 15 C 1.46464 * 118.94664 * 354.54254 * 14 12 2 16 16 C 1.52992 * 107.75110 * 229.04034 * 15 14 12 17 17 C 1.52312 * 108.69371 * 300.57893 * 16 15 14 18 18 C 1.51710 * 112.47027 * 61.04759 * 17 16 15 19 19 H 1.09007 * 110.44512 * 78.92601 * 18 17 16 20 20 C 1.52014 * 108.67674 * 199.62553 * 18 17 16 21 21 O 1.21275 * 125.14633 * 283.01820 * 20 18 17 22 22 N 1.34593 * 109.71176 * 103.02231 * 20 18 17 23 23 C 1.47026 * 111.19327 * 0.82888 * 22 20 18 24 24 C 1.44506 * 118.94813 * 174.81005 * 14 12 2 25 25 H 1.09002 * 109.56889 * 22.73159 * 24 14 12 26 26 H 1.09003 * 109.46984 * 54.68961 * 1 2 3 27 27 H 1.08999 * 109.46974 * 174.68403 * 1 2 3 28 28 H 1.08989 * 109.47253 * 294.68479 * 1 2 3 29 29 H 0.96996 * 120.00172 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.84458 * 348.62038 * 15 14 12 31 31 H 1.08998 * 109.84724 * 109.60659 * 15 14 12 32 32 H 1.08995 * 109.67069 * 180.75593 * 16 15 14 33 33 H 1.09004 * 109.61105 * 60.36360 * 16 15 14 34 34 H 1.09000 * 108.88345 * 300.27646 * 17 16 15 35 35 H 1.09007 * 108.88314 * 181.81647 * 17 16 15 36 36 H 0.96999 * 124.39868 * 180.83752 * 22 20 18 37 37 H 1.08999 * 110.36905 * 258.23096 * 23 22 20 38 38 H 1.08996 * 110.46317 * 135.94694 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8278 -0.4194 5.2204 11 1 1.8280 -2.5199 4.0080 12 6 2.0324 -0.7103 -1.2305 13 8 2.2738 -1.8982 -1.1889 14 7 2.2082 -0.0268 -2.3786 15 6 1.7908 1.3758 -2.4396 16 6 0.9515 1.5581 -3.7057 17 6 1.8016 1.1840 -4.9130 18 6 2.2608 -0.2614 -4.8733 19 1 1.4561 -0.9254 -5.1890 20 6 3.4562 -0.4180 -5.7993 21 8 3.3985 -0.4821 -7.0090 22 7 4.5882 -0.4748 -5.0735 23 6 4.3018 -0.3878 -3.6341 24 6 2.7970 -0.7028 -3.5120 25 1 2.6570 -1.7788 -3.4084 26 1 -0.3633 0.5940 -0.8386 27 1 -0.3633 -1.0232 -0.0952 28 1 -0.3633 0.4291 0.9336 29 1 0.7094 1.1617 3.4844 30 1 1.1934 1.6226 -1.5619 31 1 2.6680 2.0213 -2.4847 32 1 0.6347 2.5976 -3.7894 33 1 0.0756 0.9109 -3.6603 34 1 2.6777 1.8318 -4.9419 35 1 1.2170 1.3436 -5.8191 36 1 5.4775 -0.5618 -5.4512 37 1 4.5102 0.6167 -3.2659 38 1 4.8892 -1.1224 -3.0835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597612838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:35 Heat of formation + Delta-G solvation = -72.554449 kcal Electronic energy + Delta-G solvation = -21230.264788 eV Core-core repulsion = 18072.300479 eV Total energy + Delta-G solvation = -3157.964309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.17086 -39.05164 -36.90520 -35.44931 -33.87910 -32.80268 -31.14973 -30.10171 -27.19991 -25.30069 -25.01569 -23.46437 -22.17315 -20.71599 -20.00268 -18.13430 -17.50943 -16.76777 -16.20084 -15.78925 -15.34911 -14.87017 -14.74269 -14.29395 -14.12911 -13.77262 -13.69071 -13.34611 -12.94585 -12.64329 -12.49102 -12.32202 -11.61079 -11.48201 -11.09709 -11.04465 -10.81440 -10.75169 -10.65563 -10.59372 -10.35953 -10.07855 -9.87625 -9.20596 -9.08731 -8.71678 -8.36841 -8.25166 -6.10025 -4.14199 2.49580 3.16713 3.31258 3.34799 3.38249 3.43355 3.53095 4.23941 4.40306 4.46913 4.70262 4.77974 4.98246 5.12404 5.23031 5.25530 5.43424 5.53543 5.60910 5.66073 5.80198 5.83213 5.91888 6.03280 6.18930 6.27275 6.56811 6.65200 6.79073 6.84959 6.90836 7.01869 7.34433 7.70408 7.83781 8.00465 8.13834 8.26756 8.90509 9.05239 9.50984 10.96861 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.005293 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.629505 B = 5289.164085 C = 5761.530884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.033 3.967 3 H 0.050 0.950 4 C -0.502 4.502 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.542 6.542 14 N -0.611 5.611 15 C 0.105 3.895 16 C -0.132 4.132 17 C -0.099 4.099 18 C -0.124 4.124 19 H 0.107 0.893 20 C 0.527 3.473 21 O -0.536 6.536 22 N -0.728 5.728 23 C 0.087 3.913 24 C 0.139 3.861 25 H 0.108 0.892 26 H 0.015 0.985 27 H 0.031 0.969 28 H 0.097 0.903 29 H 0.262 0.738 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 3.729 -11.345 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.067 0.933 4 C -0.540 4.540 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.315 3.685 13 O -0.417 6.417 14 N -0.345 5.345 15 C -0.018 4.018 16 C -0.170 4.170 17 C -0.137 4.137 18 C -0.147 4.147 19 H 0.125 0.875 20 C 0.313 3.687 21 O -0.413 6.413 22 N -0.384 5.384 23 C -0.039 4.039 24 C 0.033 3.967 25 H 0.126 0.874 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.095 0.905 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.390 3.170 -11.743 12.396 hybrid contribution 0.833 -0.419 0.654 1.138 sum 3.223 2.752 -11.090 11.872 Atomic orbital electron populations 1.21760 0.96098 0.99335 1.01982 1.18909 0.94342 0.96691 0.88868 0.93255 1.21006 1.31372 1.12558 0.89060 0.91403 1.24915 0.95028 0.95018 0.99046 1.69836 1.36782 1.22898 1.23790 0.86517 0.79203 0.79841 0.81662 1.20234 1.21294 1.20127 1.22235 0.74746 0.87466 0.84041 1.90539 1.50702 1.16149 1.84278 1.47502 1.63483 1.12155 1.11404 1.21771 0.98679 0.81776 0.99546 1.21724 0.98794 1.02327 0.94177 1.20873 1.00337 0.92971 0.99561 1.21743 0.97614 1.00321 0.95009 0.87471 1.21004 0.85807 0.74322 0.87595 1.90729 1.86394 1.50916 1.13242 1.46304 1.09129 1.74765 1.08167 1.22658 0.97914 1.02919 0.80393 1.20678 0.90586 0.99677 0.85805 0.87379 0.96597 0.94937 0.88494 0.92773 0.87458 0.91983 0.90107 0.90880 0.91866 0.90913 0.75303 0.90535 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.81 37.16 0.33 -2.63 16 2 C 0.03 0.76 1.76 -92.92 -0.16 0.60 16 3 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 4 C -0.50 -13.49 8.33 -34.44 -0.29 -13.78 16 5 H 0.07 1.93 7.09 -52.49 -0.37 1.55 16 6 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 7 N -0.89 -23.90 11.29 55.43 0.63 -23.27 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.52 11.07 6.69 -10.99 -0.07 11.00 16 13 O -0.54 -13.17 15.22 5.55 0.08 -13.08 16 14 N -0.61 -9.85 2.69 -166.96 -0.45 -10.30 16 15 C 0.10 1.40 5.97 -4.07 -0.02 1.38 16 16 C -0.13 -1.43 6.11 -27.09 -0.17 -1.60 16 17 C -0.10 -1.09 5.16 -27.74 -0.14 -1.23 16 18 C -0.12 -1.56 3.12 -91.86 -0.29 -1.85 16 19 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.53 7.19 7.54 -10.42 -0.08 7.11 16 21 O -0.54 -9.06 18.03 5.56 0.10 -8.96 16 22 N -0.73 -8.26 6.26 -58.85 -0.37 -8.62 16 23 C 0.09 1.05 7.52 -3.12 -0.02 1.03 16 24 C 0.14 1.98 3.02 -68.45 -0.21 1.77 16 25 H 0.11 1.74 7.03 -51.93 -0.37 1.37 16 26 H 0.02 0.29 7.06 -51.93 -0.37 -0.08 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.37 5.95 -51.94 -0.31 2.06 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 30 H 0.11 1.59 4.57 -51.93 -0.24 1.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 35 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.41 3.81 8.96 -40.82 -0.37 3.44 16 37 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -30.87 302.28 -6.98 -37.84 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.29 Total: 2.58 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.22 Total: 3.32 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.19 Total: -42.20 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.18 Total: -22.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.87 -6.98 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.710 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds