Wall clock time and date at job start Thu Apr 9 2020 13:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46702 * 2 1 4 4 C 1.50702 * 109.46996 * 120.00283 * 2 1 3 5 5 H 1.07998 * 119.99943 * 120.00563 * 4 2 1 6 6 C 1.37874 * 119.99576 * 300.00150 * 4 2 1 7 7 N 1.31515 * 120.00619 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99785 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46874 * 60.00054 * 8 6 4 10 10 H 1.48492 * 109.47312 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46995 * 300.00316 * 8 6 4 12 12 C 1.50700 * 109.47152 * 240.00456 * 2 1 3 13 13 O 1.21291 * 119.99518 * 267.72863 * 12 2 1 14 14 N 1.34770 * 120.00336 * 87.45577 * 12 2 1 15 15 C 1.46464 * 118.94664 * 354.54254 * 14 12 2 16 16 C 1.52992 * 107.75110 * 229.04034 * 15 14 12 17 17 C 1.52312 * 108.69371 * 300.57893 * 16 15 14 18 18 C 1.51710 * 112.47027 * 61.04759 * 17 16 15 19 19 H 1.09007 * 110.44512 * 78.92601 * 18 17 16 20 20 C 1.52014 * 108.67674 * 199.62553 * 18 17 16 21 21 O 1.21275 * 125.14633 * 283.01820 * 20 18 17 22 22 N 1.34593 * 109.71176 * 103.02231 * 20 18 17 23 23 C 1.47026 * 111.19327 * 0.82888 * 22 20 18 24 24 C 1.44506 * 118.94813 * 174.81005 * 14 12 2 25 25 H 1.09002 * 109.56889 * 22.73159 * 24 14 12 26 26 H 1.09003 * 109.46984 * 54.68961 * 1 2 3 27 27 H 1.08999 * 109.46974 * 174.68403 * 1 2 3 28 28 H 1.08989 * 109.47253 * 294.68479 * 1 2 3 29 29 H 0.96996 * 120.00172 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.84458 * 348.62038 * 15 14 12 31 31 H 1.08998 * 109.84724 * 109.60659 * 15 14 12 32 32 H 1.08995 * 109.67069 * 180.75593 * 16 15 14 33 33 H 1.09004 * 109.61105 * 60.36360 * 16 15 14 34 34 H 1.09000 * 108.88345 * 300.27646 * 17 16 15 35 35 H 1.09007 * 108.88314 * 181.81647 * 17 16 15 36 36 H 0.96999 * 124.39868 * 180.83752 * 22 20 18 37 37 H 1.08999 * 110.36905 * 258.23096 * 23 22 20 38 38 H 1.08996 * 110.46317 * 135.94694 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8278 -0.4194 5.2204 11 1 1.8280 -2.5199 4.0080 12 6 2.0324 -0.7103 -1.2305 13 8 2.2738 -1.8982 -1.1889 14 7 2.2082 -0.0268 -2.3786 15 6 1.7908 1.3758 -2.4396 16 6 0.9515 1.5581 -3.7057 17 6 1.8016 1.1840 -4.9130 18 6 2.2608 -0.2614 -4.8733 19 1 1.4561 -0.9254 -5.1890 20 6 3.4562 -0.4180 -5.7993 21 8 3.3985 -0.4821 -7.0090 22 7 4.5882 -0.4748 -5.0735 23 6 4.3018 -0.3878 -3.6341 24 6 2.7970 -0.7028 -3.5120 25 1 2.6570 -1.7788 -3.4084 26 1 -0.3633 0.5940 -0.8386 27 1 -0.3633 -1.0232 -0.0952 28 1 -0.3633 0.4291 0.9336 29 1 0.7094 1.1617 3.4844 30 1 1.1934 1.6226 -1.5619 31 1 2.6680 2.0213 -2.4847 32 1 0.6347 2.5976 -3.7894 33 1 0.0756 0.9109 -3.6603 34 1 2.6777 1.8318 -4.9419 35 1 1.2170 1.3436 -5.8191 36 1 5.4775 -0.5618 -5.4512 37 1 4.5102 0.6167 -3.2659 38 1 4.8892 -1.1224 -3.0835 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597612838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:33 Heat of formation + Delta-G solvation = -94.091229 kcal Electronic energy + Delta-G solvation = -21231.198693 eV Core-core repulsion = 18072.300479 eV Total energy + Delta-G solvation = -3158.898214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.33282 -40.48789 -38.23581 -36.59491 -35.75623 -34.04850 -32.65145 -31.54011 -28.34454 -27.24091 -26.16740 -24.89918 -23.41123 -21.99903 -21.19711 -19.41142 -18.61517 -18.43609 -17.88734 -17.16188 -16.52076 -16.46047 -16.10381 -15.68108 -15.28444 -15.00575 -14.81290 -14.75249 -14.39043 -14.02513 -13.93173 -13.43222 -13.26169 -12.94234 -12.67330 -12.57586 -12.53015 -12.22455 -12.15422 -12.01881 -11.76467 -11.59560 -11.03449 -11.00671 -10.57323 -10.23845 -10.21579 -9.58112 -8.12267 -6.22405 1.41259 1.44189 1.45582 1.53167 1.84796 2.00436 2.30922 2.48011 3.17178 3.18138 3.37680 3.66459 3.74537 4.00523 4.14603 4.15618 4.28017 4.44734 4.59152 4.67296 4.70147 4.75745 4.88266 4.92534 5.00827 5.05890 5.10322 5.12576 5.36437 5.47559 5.64215 5.70025 5.78594 5.88572 5.98194 6.21766 6.53459 6.82710 7.11819 7.39441 7.49118 8.92626 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.005293 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.629505 B = 5289.164085 C = 5761.530884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.031 3.969 3 H 0.051 0.949 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.281 1.281 12 C 0.524 3.476 13 O -0.584 6.584 14 N -0.597 5.597 15 C 0.096 3.904 16 C -0.122 4.122 17 C -0.096 4.096 18 C -0.118 4.118 19 H 0.107 0.893 20 C 0.528 3.472 21 O -0.570 6.570 22 N -0.713 5.713 23 C 0.095 3.905 24 C 0.134 3.866 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.074 0.926 29 H 0.265 0.735 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.420 0.580 37 H 0.091 0.909 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 5.178 -12.104 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.010 3.990 3 H 0.069 0.931 4 C -0.565 4.565 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.207 1.207 12 C 0.316 3.684 13 O -0.463 6.463 14 N -0.330 5.330 15 C -0.025 4.025 16 C -0.160 4.160 17 C -0.134 4.134 18 C -0.140 4.140 19 H 0.125 0.875 20 C 0.314 3.686 21 O -0.449 6.449 22 N -0.368 5.368 23 C -0.031 4.031 24 C 0.028 3.972 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.261 0.739 37 H 0.109 0.891 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.703 4.664 -12.522 13.633 hybrid contribution 0.752 -0.851 0.871 1.431 sum 3.456 3.813 -11.651 12.737 Atomic orbital electron populations 1.21584 0.95458 0.98713 1.02265 1.18817 0.94876 0.96399 0.88926 0.93078 1.21177 1.31816 1.12377 0.91166 0.93871 1.25492 0.95190 0.95681 1.01119 1.69905 1.36900 1.23341 1.24383 0.85736 0.78821 0.78615 0.79209 1.19903 1.20095 1.20687 1.21787 0.74800 0.86843 0.85004 1.90517 1.52829 1.17752 1.85159 1.47325 1.62248 1.13048 1.10364 1.22037 0.99983 0.80051 1.00471 1.21691 0.97855 1.04053 0.92416 1.20891 1.00906 0.91520 1.00098 1.21721 0.97303 1.01792 0.93198 0.87469 1.21082 0.86461 0.73853 0.87158 1.90721 1.86849 1.52728 1.14593 1.46194 1.09406 1.73596 1.07613 1.22547 0.96141 1.03731 0.80643 1.20713 0.92233 0.98345 0.85874 0.89667 0.93050 0.96526 0.90701 0.92541 0.88829 0.89748 0.87101 0.91557 0.90940 0.89673 0.73892 0.89083 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.81 71.98 0.63 -4.76 16 2 C 0.03 1.44 1.76 -12.28 -0.02 1.42 16 3 H 0.05 2.35 6.62 -2.39 -0.02 2.34 16 4 C -0.53 -28.88 8.33 25.60 0.21 -28.67 16 5 H 0.04 2.53 7.09 -2.91 -0.02 2.51 16 6 C 0.02 1.33 5.29 84.65 0.45 1.77 16 7 N -0.91 -48.29 11.29 21.45 0.24 -48.05 16 8 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.52 22.29 6.69 87.66 0.59 22.88 16 13 O -0.58 -29.15 15.22 -3.06 -0.05 -29.19 16 14 N -0.60 -18.56 2.69 -800.52 -2.15 -20.71 16 15 C 0.10 2.32 5.97 86.38 0.52 2.84 16 16 C -0.12 -2.24 6.11 30.36 0.19 -2.05 16 17 C -0.10 -1.79 5.16 29.94 0.15 -1.63 16 18 C -0.12 -2.73 3.12 -11.60 -0.04 -2.77 16 19 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 20 C 0.53 13.45 7.54 88.11 0.66 14.11 16 21 O -0.57 -18.43 18.03 -3.01 -0.05 -18.49 16 22 N -0.71 -14.68 6.26 -458.60 -2.87 -17.56 16 23 C 0.10 2.12 7.52 86.69 0.65 2.77 16 24 C 0.13 3.67 3.02 45.72 0.14 3.80 16 25 H 0.09 2.76 7.03 -2.39 -0.02 2.75 16 26 H 0.05 1.84 7.06 -2.39 -0.02 1.83 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.07 3.66 5.95 -2.39 -0.01 3.65 16 29 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 30 H 0.09 2.57 4.57 -2.39 -0.01 2.56 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.25 7.91 -2.39 -0.02 1.23 16 35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.42 6.91 8.96 -92.71 -0.83 6.08 16 37 H 0.09 1.83 8.12 -2.39 -0.02 1.81 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -67.10 302.28 1.52 -65.58 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.25 Total: 13.64 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.13 Total: 9.71 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -4.78 Total: -86.32 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.10 Total: -47.68 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -67.10 1.52 -65.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.514 kcal (2) G-P(sol) polarization free energy of solvation -67.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds