Wall clock time and date at job start Thu Apr 9 2020 13:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46966 * 2 1 4 4 C 1.50692 * 109.47101 * 240.00055 * 2 1 3 5 5 H 1.08001 * 120.00099 * 239.99925 * 4 2 1 6 6 C 1.37882 * 120.00067 * 60.00238 * 4 2 1 7 7 N 1.31505 * 120.00092 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99976 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46863 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47336 * 119.99709 * 8 6 4 11 11 H 1.48498 * 109.46961 * 239.99710 * 8 6 4 12 12 C 1.50697 * 109.47061 * 119.99911 * 2 1 3 13 13 O 1.21273 * 120.00013 * 105.47258 * 12 2 1 14 14 N 1.34781 * 119.99968 * 285.46989 * 12 2 1 15 15 C 1.46459 * 118.94044 * 354.64749 * 14 12 2 16 16 C 1.53425 * 107.52289 * 229.08735 * 15 14 12 17 17 C 1.52331 * 108.57703 * 300.30813 * 16 15 14 18 18 C 1.51703 * 112.45923 * 61.19908 * 17 16 15 19 19 H 1.08992 * 109.92119 * 78.55085 * 18 17 16 20 20 C 1.52011 * 108.69782 * 199.61665 * 18 17 16 21 21 O 1.21290 * 125.13364 * 283.12600 * 20 18 17 22 22 N 1.34842 * 109.76669 * 103.14629 * 20 18 17 23 23 C 1.47021 * 111.04094 * 0.75863 * 22 20 18 24 24 C 1.44498 * 118.93535 * 174.66067 * 14 12 2 25 25 H 1.09007 * 109.56768 * 22.84542 * 24 14 12 26 26 H 1.09001 * 109.47393 * 53.66794 * 1 2 3 27 27 H 1.08998 * 109.47280 * 173.66531 * 1 2 3 28 28 H 1.09002 * 109.47444 * 293.66705 * 1 2 3 29 29 H 0.96999 * 120.00525 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.84496 * 348.58466 * 15 14 12 31 31 H 1.08993 * 109.85365 * 109.57654 * 15 14 12 32 32 H 1.09001 * 109.61895 * 60.03556 * 16 15 14 33 33 H 1.08996 * 109.61696 * 180.40227 * 16 15 14 34 34 H 1.08996 * 108.88230 * 181.96728 * 17 16 15 35 35 H 1.09001 * 108.88086 * 300.53064 * 17 16 15 36 36 H 0.97004 * 124.55076 * 180.77498 * 22 20 18 37 37 H 1.09001 * 110.36663 * 258.20450 * 23 22 20 38 38 H 1.09001 * 110.36846 * 135.98224 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1464 -2.2870 -3.6037 10 1 1.1662 -1.5866 -4.8160 11 1 3.1466 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2304 13 8 2.4986 -1.8261 1.1386 14 7 1.9634 -0.1057 2.4330 15 6 1.5070 1.2842 2.5023 16 6 2.5152 2.0593 3.3606 17 6 2.5606 1.4269 4.7458 18 6 3.0127 -0.0206 4.7074 19 1 4.0962 -0.0686 4.5994 20 6 2.5752 -0.7020 5.9939 21 8 3.1166 -0.5723 7.0715 22 7 1.4946 -1.4730 5.7570 23 6 1.1069 -1.4172 4.3399 24 6 2.3425 -0.8496 3.6124 25 1 3.0071 -1.6665 3.3307 26 1 -0.3634 0.6089 -0.8279 27 1 -0.3634 -1.0214 -0.1134 28 1 -0.3634 0.4125 0.9412 29 1 0.7088 1.1614 -3.4844 30 1 1.4687 1.7115 1.5002 31 1 0.5196 1.3271 2.9618 32 1 3.5026 2.0072 2.9020 33 1 2.2033 3.1006 3.4408 34 1 3.2494 1.9953 5.3706 35 1 1.5649 1.4726 5.1871 36 1 1.0330 -1.9955 6.4314 37 1 0.2509 -0.7556 4.2065 38 1 0.8747 -2.4161 3.9705 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597612839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:38 Heat of formation + Delta-G solvation = -94.068642 kcal Electronic energy + Delta-G solvation = -21237.171957 eV Core-core repulsion = 18078.274722 eV Total energy + Delta-G solvation = -3158.897235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.31668 -40.47623 -38.22484 -36.57659 -35.73650 -34.07192 -32.61317 -31.53160 -28.31995 -27.19270 -26.15899 -24.82787 -23.51198 -22.00024 -21.12781 -19.46118 -18.57915 -18.45182 -17.83458 -17.16065 -16.52639 -16.42985 -16.13989 -15.74124 -15.26023 -14.89797 -14.84988 -14.63932 -14.48930 -14.05621 -13.81714 -13.50828 -13.25872 -12.92251 -12.71017 -12.63936 -12.40800 -12.26240 -12.12865 -12.02641 -11.74785 -11.59626 -11.01693 -10.94495 -10.56752 -10.22318 -10.21539 -9.57481 -8.12879 -6.21233 1.40718 1.40880 1.44220 1.56013 1.85794 2.00704 2.31289 2.47747 3.17698 3.18698 3.38157 3.66916 3.74693 3.99880 4.14775 4.16227 4.28654 4.45236 4.58392 4.67272 4.69954 4.79775 4.89259 4.94531 5.00881 5.05903 5.09498 5.13709 5.36514 5.53075 5.64483 5.73033 5.79279 5.88816 5.98517 6.22026 6.54732 6.85804 7.12240 7.41290 7.50378 8.93225 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036145 B = 0.005135 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.472185 B = 5451.746776 C = 5709.794682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.949 3.051 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.522 3.478 13 O -0.582 6.582 14 N -0.597 5.597 15 C 0.097 3.903 16 C -0.124 4.124 17 C -0.096 4.096 18 C -0.119 4.119 19 H 0.105 0.895 20 C 0.529 3.471 21 O -0.569 6.569 22 N -0.714 5.714 23 C 0.096 3.904 24 C 0.134 3.866 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.264 0.736 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.421 0.579 37 H 0.094 0.906 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 3.466 13.418 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.202 1.202 11 H -0.200 1.200 12 C 0.314 3.686 13 O -0.461 6.461 14 N -0.329 5.329 15 C -0.025 4.025 16 C -0.162 4.162 17 C -0.134 4.134 18 C -0.141 4.141 19 H 0.123 0.877 20 C 0.315 3.685 21 O -0.449 6.449 22 N -0.369 5.369 23 C -0.030 4.030 24 C 0.028 3.972 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.262 0.738 37 H 0.112 0.888 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.123 3.122 13.715 14.225 hybrid contribution 0.240 -0.995 -0.792 1.294 sum -1.883 2.127 12.923 13.232 Atomic orbital electron populations 1.21526 0.94797 0.99859 1.01092 1.18822 0.95280 0.96141 0.88957 0.93242 1.21297 1.31625 1.12469 0.91254 0.93762 1.25485 0.95217 0.95692 1.01098 1.69934 1.37110 1.23415 1.24194 0.85643 0.78309 0.78648 0.79876 1.20680 1.20175 1.20044 1.21767 0.75733 0.85834 0.85280 1.90513 1.46585 1.22452 1.86572 1.47310 1.66717 1.14276 1.04608 1.22155 0.98476 0.79116 1.02729 1.21777 0.99733 1.00653 0.94049 1.20892 1.02826 0.91090 0.98549 1.21705 1.02898 0.97794 0.91751 0.87705 1.21116 0.79786 0.78201 0.89359 1.90724 1.59516 1.65318 1.29301 1.46237 1.31068 1.48198 1.11402 1.22545 0.97848 1.03243 0.79319 1.20702 0.96212 0.94691 0.85560 0.89825 0.91176 0.96246 0.92743 0.92633 0.88971 0.89138 0.92006 0.87154 0.89842 0.90714 0.73804 0.88828 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.86 8.64 71.98 0.62 -4.24 16 2 C 0.03 1.35 1.78 -12.29 -0.02 1.33 16 3 H 0.05 2.32 6.44 -2.38 -0.02 2.31 16 4 C -0.53 -29.24 8.36 25.60 0.21 -29.03 16 5 H 0.04 2.66 6.85 -2.91 -0.02 2.64 16 6 C 0.02 1.33 5.30 84.66 0.45 1.78 16 7 N -0.91 -48.55 11.39 21.45 0.24 -48.31 16 8 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 C 0.52 22.12 6.83 87.66 0.60 22.72 16 13 O -0.58 -29.14 14.91 -3.01 -0.04 -29.19 16 14 N -0.60 -18.28 2.69 -799.73 -2.15 -20.43 16 15 C 0.10 2.29 5.16 86.53 0.45 2.74 16 16 C -0.12 -2.33 6.13 30.52 0.19 -2.15 16 17 C -0.10 -1.79 5.16 29.95 0.15 -1.63 16 18 C -0.12 -2.78 3.12 -11.60 -0.04 -2.81 16 19 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 20 C 0.53 13.37 7.54 88.07 0.66 14.03 16 21 O -0.57 -18.40 18.03 -3.06 -0.06 -18.45 16 22 N -0.71 -14.24 6.28 -458.26 -2.88 -17.12 16 23 C 0.10 2.04 7.51 86.69 0.65 2.69 16 24 C 0.13 3.62 3.01 45.72 0.14 3.76 16 25 H 0.08 2.72 7.04 -2.38 -0.02 2.70 16 26 H 0.07 3.28 6.27 -2.39 -0.01 3.26 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 1.81 6.95 -2.39 -0.02 1.80 16 29 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 30 H 0.09 2.53 5.27 -2.38 -0.01 2.52 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.26 7.91 -2.39 -0.02 1.24 16 36 H 0.42 6.62 8.96 -92.71 -0.83 5.79 16 37 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -68.03 301.79 1.46 -66.57 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.25 Total: 12.13 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.07 Total: 9.17 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -4.78 Total: -85.86 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -0.10 Total: -47.64 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.03 1.46 -66.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.499 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds