Wall clock time and date at job start Thu Apr 9 2020 13:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46809 * 2 1 4 4 C 1.50703 * 109.47137 * 119.99363 * 2 1 3 5 5 O 1.21290 * 119.99473 * 120.00084 * 4 2 1 6 6 N 1.34769 * 120.00412 * 300.00392 * 4 2 1 7 7 C 1.37095 * 120.00244 * 179.97438 * 6 4 2 8 8 H 1.08001 * 119.99974 * 222.93602 * 7 6 4 9 9 C 1.38949 * 120.00141 * 42.93472 * 7 6 4 10 10 N 1.31415 * 119.99652 * 18.93472 * 9 7 6 11 11 Si 1.86800 * 120.00357 * 198.93966 * 9 7 6 12 12 H 1.48498 * 109.47087 * 89.99326 * 11 9 7 13 13 H 1.48493 * 109.47150 * 210.00223 * 11 9 7 14 14 H 1.48507 * 109.46794 * 329.99883 * 11 9 7 15 15 C 1.46505 * 119.99973 * 359.97438 * 6 4 2 16 16 C 1.53002 * 117.49856 * 187.59984 * 15 6 4 17 17 C 1.53000 * 117.49777 * 118.97623 * 15 6 4 18 18 C 1.52995 * 109.47052 * 239.99858 * 2 1 3 19 19 H 1.09004 * 110.21880 * 298.06454 * 18 2 1 20 20 C 1.54476 * 110.24859 * 60.00006 * 18 2 1 21 21 C 1.54628 * 101.76680 * 93.57994 * 20 18 2 22 22 C 1.51286 * 104.19521 * 24.80136 * 21 20 18 23 23 O 1.21275 * 124.94048 * 163.78392 * 22 21 20 24 24 N 1.34417 * 110.11287 * 343.74584 * 22 21 20 25 25 H 1.09001 * 109.46967 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47171 * 60.00587 * 1 2 3 28 28 H 0.97002 * 119.99721 * 174.92946 * 10 9 7 29 29 H 1.08999 * 115.54900 * 333.30708 * 15 6 4 30 30 H 1.09001 * 117.49952 * 359.97438 * 16 15 6 31 31 H 1.09001 * 117.49682 * 145.01862 * 16 15 6 32 32 H 1.09006 * 117.49696 * 214.97716 * 17 15 6 33 33 H 1.08998 * 117.50383 * 0.02562 * 17 15 6 34 34 H 1.09004 * 110.96960 * 211.70319 * 20 18 2 35 35 H 1.09000 * 110.97057 * 335.46303 * 20 18 2 36 36 H 1.09000 * 110.48751 * 143.47698 * 21 20 18 37 37 H 1.08994 * 110.48871 * 266.12337 * 21 20 18 38 38 H 0.96998 * 124.34736 * 179.59361 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.1634 -0.8963 3.5740 8 1 1.5002 -1.0620 4.4101 9 6 3.4794 -1.3384 3.6328 10 7 4.3786 -0.8352 2.8172 11 14 3.9703 -2.6480 4.8711 12 1 3.8073 -3.9920 4.2611 13 1 5.3889 -2.4511 5.2636 14 1 3.1048 -2.5418 6.0733 15 6 0.8649 0.9416 2.5890 16 6 0.6766 1.5188 3.9934 17 6 -0.4759 0.7817 3.3083 18 6 2.0400 -0.7213 -1.2492 19 1 1.7119 -1.7607 -1.2444 20 6 1.5350 -0.0071 -2.5225 21 6 2.7105 0.9473 -2.8359 22 6 3.9088 0.2833 -2.1941 23 8 5.0657 0.5539 -2.4370 24 7 3.5045 -0.6495 -1.3148 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 5.3105 -1.0890 2.9067 29 1 0.9092 1.6447 1.7573 30 1 1.1787 1.0118 4.8174 31 1 0.5970 2.6020 4.0858 32 1 -1.3138 1.3800 2.9500 33 1 -0.7316 -0.2098 3.6819 34 1 1.3828 -0.7184 -3.3343 35 1 0.6218 0.5523 -2.3198 36 1 2.8542 1.0347 -3.9129 37 1 2.5347 1.9275 -2.3928 38 1 4.1036 -1.2040 -0.7909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599155150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:43 Heat of formation + Delta-G solvation = -56.340702 kcal Electronic energy + Delta-G solvation = -21542.968593 eV Core-core repulsion = 18385.707365 eV Total energy + Delta-G solvation = -3157.261228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60752 -40.25385 -38.08632 -37.33362 -34.81162 -33.90170 -32.49179 -31.92410 -27.84519 -26.94887 -25.08722 -23.13131 -22.76280 -22.01524 -21.27560 -20.58759 -18.60042 -18.13328 -17.78486 -16.88922 -16.63838 -16.29866 -15.86806 -15.42985 -15.20498 -14.70240 -14.53337 -14.40453 -13.99252 -13.70882 -13.56479 -13.07166 -13.02232 -12.83377 -12.63244 -12.50733 -12.27672 -12.14458 -12.13389 -11.95320 -11.60045 -11.45113 -11.15472 -10.85249 -10.70884 -10.00787 -9.76162 -8.91194 -8.19106 -5.95282 1.32941 1.40249 1.44990 1.64420 2.26821 2.46591 2.58529 3.07241 3.14756 3.40117 3.51948 3.69075 3.88656 4.09947 4.14890 4.21765 4.29425 4.44937 4.47789 4.50970 4.62791 4.81223 4.86644 4.93102 4.96937 5.08048 5.17351 5.22501 5.30870 5.33845 5.48170 5.51111 5.54589 5.90798 6.19476 6.28652 7.06930 7.24476 7.29401 7.77654 8.43386 8.87894 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.008102 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.609516 B = 3455.134996 C = 4465.125098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.082 0.918 4 C 0.473 3.527 5 O -0.584 6.584 6 N -0.444 5.444 7 C -0.353 4.353 8 H 0.075 0.925 9 C 0.024 3.976 10 N -0.867 5.867 11 Si 0.964 3.036 12 H -0.291 1.291 13 H -0.287 1.287 14 H -0.256 1.256 15 C 0.053 3.947 16 C -0.185 4.185 17 C -0.174 4.174 18 C 0.147 3.853 19 H 0.080 0.920 20 C -0.112 4.112 21 C -0.143 4.143 22 C 0.495 3.505 23 O -0.607 6.607 24 N -0.715 5.715 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.254 0.746 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 5.912 -7.871 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 H 0.100 0.900 4 C 0.262 3.738 5 O -0.466 6.466 6 N -0.164 5.164 7 C -0.481 4.481 8 H 0.092 0.908 9 C -0.182 4.182 10 N -0.502 5.502 11 Si 0.790 3.210 12 H -0.218 1.218 13 H -0.213 1.213 14 H -0.180 1.180 15 C -0.052 4.052 16 C -0.223 4.223 17 C -0.213 4.213 18 C 0.041 3.959 19 H 0.098 0.902 20 C -0.149 4.149 21 C -0.182 4.182 22 C 0.284 3.716 23 O -0.490 6.490 24 N -0.365 5.365 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.147 0.853 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.858 5.553 -8.187 16.223 hybrid contribution 1.541 -1.213 1.497 2.468 sum -11.317 4.339 -6.690 13.844 Atomic orbital electron populations 1.22053 0.90041 1.03106 1.04987 1.21628 0.99504 0.99567 0.92332 0.89966 1.20742 0.82601 0.85449 0.84984 1.90452 1.40013 1.29776 1.86325 1.42990 1.45784 1.23084 1.04581 1.19037 0.94459 1.37337 0.97235 0.90776 1.25929 0.95944 0.98480 0.97855 1.69957 1.01047 1.41207 1.38022 0.85406 0.77313 0.79321 0.78974 1.21835 1.21348 1.17967 1.22006 0.95174 0.91178 0.96887 1.23174 1.02765 1.00208 0.96117 1.23336 0.92278 1.01451 1.04207 1.21619 0.78516 1.00623 0.95108 0.90202 1.22860 0.98691 0.98412 0.94983 1.22384 0.91585 1.00706 1.03570 1.22000 0.90743 0.79498 0.79390 1.90658 1.23477 1.67530 1.67376 1.46664 1.09685 1.38632 1.41487 0.90489 0.92984 0.87654 0.93644 0.85350 0.90692 0.86762 0.85280 0.90817 0.87785 0.85140 0.86076 0.86366 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.58 71.98 0.62 -2.61 16 2 C -0.11 -3.45 1.72 -11.54 -0.02 -3.47 16 3 H 0.08 2.62 7.57 -2.39 -0.02 2.60 16 4 C 0.47 22.22 6.24 87.66 0.55 22.77 16 5 O -0.58 -32.79 12.46 -3.06 -0.04 -32.83 16 6 N -0.44 -21.02 2.85 -613.13 -1.75 -22.77 16 7 C -0.35 -19.06 7.83 84.04 0.66 -18.40 16 8 H 0.07 3.91 7.40 -2.91 -0.02 3.89 16 9 C 0.02 1.37 4.36 84.93 0.37 1.74 16 10 N -0.87 -52.86 11.66 21.66 0.25 -52.61 16 11 Si 0.96 46.30 29.60 68.60 2.03 48.33 16 12 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 C 0.05 1.86 4.31 44.99 0.19 2.05 16 16 C -0.18 -6.06 9.80 30.60 0.30 -5.76 16 17 C -0.17 -4.95 9.39 30.60 0.29 -4.66 16 18 C 0.15 4.35 2.56 45.44 0.12 4.47 16 19 H 0.08 2.51 8.07 -2.38 -0.02 2.50 16 20 C -0.11 -1.94 6.52 31.65 0.21 -1.74 16 21 C -0.14 -3.09 6.86 30.59 0.21 -2.88 16 22 C 0.50 18.11 8.43 87.90 0.74 18.85 16 23 O -0.61 -28.12 18.03 -3.01 -0.05 -28.17 16 24 N -0.71 -27.41 5.40 -439.44 -2.37 -29.78 16 25 H 0.08 1.74 4.37 -2.39 -0.01 1.73 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.36 6.11 -2.39 -0.01 1.35 16 28 H 0.25 15.29 8.32 -92.71 -0.77 14.52 16 29 H 0.13 3.85 6.24 -2.39 -0.01 3.84 16 30 H 0.07 2.95 6.82 -2.39 -0.02 2.93 16 31 H 0.11 2.99 8.14 -2.39 -0.02 2.98 16 32 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.13 1.35 5.82 -2.39 -0.01 1.34 16 36 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.40 18.56 8.01 -92.71 -0.74 17.82 16 Total: -1.00 -80.19 303.63 2.64 -77.55 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.34 Total: 29.92 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 4.23 Total: 10.36 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.87 Total: -105.16 kcal Atomic # 8 Polarization: -60.91 SS G_CDS: -0.09 Total: -61.00 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -80.19 2.64 -77.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.211 kcal (2) G-P(sol) polarization free energy of solvation -80.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds