Wall clock time and date at job start Thu Apr 9 2020 13:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47093 * 2 1 4 4 C 1.50695 * 109.47224 * 119.99754 * 2 1 3 5 5 O 1.21295 * 119.99846 * 119.99703 * 4 2 1 6 6 N 1.34771 * 120.00416 * 300.00365 * 4 2 1 7 7 C 1.37095 * 120.00207 * 179.72074 * 6 4 2 8 8 H 1.08005 * 120.00525 * 139.54934 * 7 6 4 9 9 C 1.38952 * 120.00285 * 319.54995 * 7 6 4 10 10 N 1.31413 * 120.00350 * 166.40236 * 9 7 6 11 11 Si 1.86803 * 119.99745 * 346.40402 * 9 7 6 12 12 H 1.48503 * 109.46819 * 95.81194 * 11 9 7 13 13 H 1.48494 * 109.47202 * 215.81296 * 11 9 7 14 14 H 1.48499 * 109.47399 * 335.81549 * 11 9 7 15 15 C 1.46507 * 119.99725 * 359.97438 * 6 4 2 16 16 C 1.53000 * 117.49480 * 187.28699 * 15 6 4 17 17 C 1.52998 * 60.00153 * 252.51390 * 16 15 6 18 18 C 1.52997 * 109.47123 * 240.00485 * 2 1 3 19 19 H 1.09003 * 110.21248 * 185.70097 * 18 2 1 20 20 C 1.54477 * 110.24864 * 63.76965 * 18 2 1 21 21 C 1.54854 * 101.66111 * 266.38845 * 20 18 2 22 22 C 1.51278 * 104.21025 * 335.19303 * 21 20 18 23 23 O 1.21280 * 124.94485 * 196.28446 * 22 21 20 24 24 N 1.34423 * 110.11847 * 16.26462 * 22 21 20 25 25 H 1.09002 * 109.46903 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47087 * 300.00047 * 1 2 3 28 28 H 0.96996 * 120.00018 * 179.97438 * 10 9 7 29 29 H 1.08993 * 115.54922 * 332.99722 * 15 6 4 30 30 H 1.09002 * 117.50138 * 0.02562 * 16 15 6 31 31 H 1.09005 * 117.49375 * 145.02555 * 16 15 6 32 32 H 1.09010 * 117.49906 * 252.51674 * 17 16 15 33 33 H 1.08997 * 117.52057 * 107.48364 * 17 16 15 34 34 H 1.08996 * 110.96954 * 24.53852 * 20 18 2 35 35 H 1.08998 * 110.96884 * 148.29703 * 20 18 2 36 36 H 1.08994 * 110.46921 * 216.51224 * 21 20 18 37 37 H 1.08999 * 110.60235 * 93.93755 * 21 20 18 38 38 H 0.96996 * 124.35652 * 180.43180 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1591 -0.8995 3.5739 8 1 2.5001 -0.3318 4.4270 9 6 2.1788 -2.2884 3.6109 10 7 2.8487 -2.9112 4.5545 11 14 1.2530 -3.2704 2.3193 12 1 2.1847 -3.6566 1.2293 13 1 0.6841 -4.4931 2.9408 14 1 0.1543 -2.4419 1.7609 15 6 0.8649 0.9415 2.5889 16 6 0.6706 1.5143 3.9943 17 6 -0.4792 0.7799 3.3019 18 6 2.0400 -0.7211 -1.2493 19 1 3.1252 -0.8170 -1.2122 20 6 1.6143 0.0461 -2.5207 21 6 0.2916 -0.6696 -2.8900 22 6 0.4277 -2.0436 -2.2718 23 8 -0.2557 -3.0042 -2.5565 24 7 1.4167 -2.0451 -1.3614 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.8621 -3.8807 4.5805 29 1 0.9131 1.6472 1.7597 30 1 1.1695 1.0049 4.8188 31 1 0.5911 2.5972 4.0898 32 1 -1.3152 1.3797 2.9418 33 1 -0.7373 -0.2129 3.6705 34 1 1.4412 1.0995 -2.3010 35 1 2.3548 -0.0692 -3.3121 36 1 0.1892 -0.7466 -3.9723 37 1 -0.5618 -0.1423 -2.4636 38 1 1.6843 -2.8215 -0.8452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599155151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:48 Heat of formation + Delta-G solvation = -23.731371 kcal Electronic energy + Delta-G solvation = -21952.182706 eV Core-core repulsion = 18796.335525 eV Total energy + Delta-G solvation = -3155.847182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.76531 -39.13398 -36.87159 -36.24635 -33.02483 -32.46935 -31.24518 -31.01757 -27.46515 -25.36307 -23.53219 -22.07921 -21.58391 -20.72533 -20.26409 -19.21225 -17.13131 -17.02887 -16.45995 -16.18491 -15.49868 -14.94616 -14.40934 -14.02961 -13.84522 -13.60522 -13.30154 -13.10249 -13.04946 -12.56986 -12.43752 -12.08605 -11.84076 -11.72564 -11.31905 -11.12845 -10.99727 -10.89242 -10.65698 -10.24536 -10.04677 -10.00037 -9.66918 -9.56628 -8.85926 -8.67105 -8.44675 -7.57500 -6.21735 -4.04959 2.80260 3.17296 3.46997 3.59343 3.69846 3.80997 4.13391 4.41620 4.47769 4.52778 4.61704 4.77813 5.00900 5.09398 5.21145 5.32564 5.34154 5.40935 5.46693 5.56249 5.63057 5.67000 5.71274 5.83406 6.00285 6.03199 6.08937 6.13958 6.23307 6.47034 6.60067 6.77381 7.08897 7.37437 7.76867 7.85636 8.50440 8.67589 8.79020 9.34654 9.67776 10.80114 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.009242 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.858537 B = 3029.030031 C = 3731.539731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 H 0.099 0.901 4 C 0.452 3.548 5 O -0.546 6.546 6 N -0.428 5.428 7 C -0.348 4.348 8 H 0.098 0.902 9 C 0.081 3.919 10 N -0.870 5.870 11 Si 0.946 3.054 12 H -0.260 1.260 13 H -0.324 1.324 14 H -0.285 1.285 15 C 0.065 3.935 16 C -0.176 4.176 17 C -0.197 4.197 18 C 0.149 3.851 19 H 0.098 0.902 20 C -0.126 4.126 21 C -0.160 4.160 22 C 0.515 3.485 23 O -0.549 6.549 24 N -0.711 5.711 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.273 0.727 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 11.263 -10.786 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.140 4.140 3 H 0.117 0.883 4 C 0.243 3.757 5 O -0.431 6.431 6 N -0.146 5.146 7 C -0.473 4.473 8 H 0.115 0.885 9 C -0.127 4.127 10 N -0.505 5.505 11 Si 0.781 3.219 12 H -0.188 1.188 13 H -0.256 1.256 14 H -0.212 1.212 15 C -0.041 4.041 16 C -0.214 4.214 17 C -0.236 4.236 18 C 0.043 3.957 19 H 0.116 0.884 20 C -0.164 4.164 21 C -0.200 4.200 22 C 0.301 3.699 23 O -0.427 6.427 24 N -0.366 5.366 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.485 10.225 -10.921 15.618 hybrid contribution -0.329 -0.748 -0.029 0.818 sum -4.814 9.477 -10.949 15.260 Atomic orbital electron populations 1.22234 0.93742 1.03168 1.02856 1.21675 0.97539 1.00510 0.94280 0.88344 1.20109 0.83951 0.87386 0.84271 1.90402 1.41033 1.26414 1.85259 1.43115 1.42117 1.24116 1.05242 1.18831 1.44022 0.89786 0.94688 0.88468 1.25438 0.93959 0.97136 0.96202 1.69699 1.37185 1.09634 1.33936 0.85698 0.77836 0.77339 0.80989 1.18806 1.25599 1.21152 1.21845 0.94337 0.91955 0.95948 1.23189 1.02415 0.98676 0.97098 1.23287 0.91933 1.02515 1.05865 1.21424 0.98824 0.82226 0.93221 0.88435 1.22699 0.96631 1.00160 0.96941 1.22523 0.99921 0.94849 1.02686 1.20898 0.79322 0.90178 0.79537 1.90720 1.47224 1.39805 1.64974 1.46431 1.35811 1.13317 1.41075 0.92006 0.92306 0.90439 0.91760 0.86792 0.87206 0.89390 0.89436 0.88446 0.89000 0.89815 0.88518 0.87571 0.74259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 7.54 37.16 0.28 -2.07 16 2 C -0.12 -1.81 1.69 -91.78 -0.15 -1.96 16 3 H 0.10 1.21 7.54 -51.93 -0.39 0.82 16 4 C 0.45 9.78 4.97 -10.99 -0.05 9.72 16 5 O -0.55 -13.77 9.65 5.54 0.05 -13.72 16 6 N -0.43 -9.59 2.59 -107.73 -0.28 -9.87 16 7 C -0.35 -9.40 8.83 -14.93 -0.13 -9.53 16 8 H 0.10 2.76 6.82 -52.48 -0.36 2.40 16 9 C 0.08 2.36 5.03 -17.47 -0.09 2.27 16 10 N -0.87 -26.38 13.96 55.50 0.77 -25.61 16 11 Si 0.95 25.33 23.91 -169.99 -4.06 21.26 16 12 H -0.26 -7.09 5.84 56.52 0.33 -6.76 16 13 H -0.32 -8.86 7.11 56.52 0.40 -8.46 16 14 H -0.29 -7.40 6.58 56.52 0.37 -7.03 16 15 C 0.06 1.12 4.31 -67.93 -0.29 0.83 16 16 C -0.18 -2.85 9.82 -26.73 -0.26 -3.11 16 17 C -0.20 -3.19 9.37 -26.73 -0.25 -3.44 16 18 C 0.15 2.12 2.93 -67.01 -0.20 1.92 16 19 H 0.10 1.42 7.95 -51.93 -0.41 1.01 16 20 C -0.13 -1.21 6.28 -24.98 -0.16 -1.37 16 21 C -0.16 -1.78 6.06 -26.62 -0.16 -1.94 16 22 C 0.51 8.60 7.33 -10.86 -0.08 8.52 16 23 O -0.55 -11.38 18.03 5.56 0.10 -11.28 16 24 N -0.71 -12.34 4.86 -52.76 -0.26 -12.59 16 25 H 0.06 0.67 5.32 -51.93 -0.28 0.39 16 26 H 0.06 1.05 6.60 -51.93 -0.34 0.70 16 27 H 0.08 1.10 4.36 -51.93 -0.23 0.88 16 28 H 0.27 7.87 8.31 -40.82 -0.34 7.54 16 29 H 0.11 1.57 6.26 -51.93 -0.33 1.25 16 30 H 0.11 2.08 6.43 -51.93 -0.33 1.74 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.09 0.66 7.85 -51.93 -0.41 0.25 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.11 1.06 6.09 -51.93 -0.32 0.74 16 38 H 0.42 8.40 7.56 -40.82 -0.31 8.09 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -34.54 288.47 -5.92 -40.46 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.05 Total: 7.16 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.55 Total: -0.15 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.24 Total: -48.07 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.15 Total: -25.00 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.06 Total: 21.26 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.54 -5.92 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.728 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds