Wall clock time and date at job start Thu Apr 9 2020 13:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47093 * 2 1 4 4 C 1.50695 * 109.47224 * 119.99754 * 2 1 3 5 5 O 1.21295 * 119.99846 * 119.99703 * 4 2 1 6 6 N 1.34771 * 120.00416 * 300.00365 * 4 2 1 7 7 C 1.37095 * 120.00207 * 179.72074 * 6 4 2 8 8 H 1.08005 * 120.00525 * 139.54934 * 7 6 4 9 9 C 1.38952 * 120.00285 * 319.54995 * 7 6 4 10 10 N 1.31413 * 120.00350 * 166.40236 * 9 7 6 11 11 Si 1.86803 * 119.99745 * 346.40402 * 9 7 6 12 12 H 1.48503 * 109.46819 * 95.81194 * 11 9 7 13 13 H 1.48494 * 109.47202 * 215.81296 * 11 9 7 14 14 H 1.48499 * 109.47399 * 335.81549 * 11 9 7 15 15 C 1.46507 * 119.99725 * 359.97438 * 6 4 2 16 16 C 1.53000 * 117.49480 * 187.28699 * 15 6 4 17 17 C 1.52998 * 60.00153 * 252.51390 * 16 15 6 18 18 C 1.52997 * 109.47123 * 240.00485 * 2 1 3 19 19 H 1.09003 * 110.21248 * 185.70097 * 18 2 1 20 20 C 1.54477 * 110.24864 * 63.76965 * 18 2 1 21 21 C 1.54854 * 101.66111 * 266.38845 * 20 18 2 22 22 C 1.51278 * 104.21025 * 335.19303 * 21 20 18 23 23 O 1.21280 * 124.94485 * 196.28446 * 22 21 20 24 24 N 1.34423 * 110.11847 * 16.26462 * 22 21 20 25 25 H 1.09002 * 109.46903 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47087 * 300.00047 * 1 2 3 28 28 H 0.96996 * 120.00018 * 179.97438 * 10 9 7 29 29 H 1.08993 * 115.54922 * 332.99722 * 15 6 4 30 30 H 1.09002 * 117.50138 * 0.02562 * 16 15 6 31 31 H 1.09005 * 117.49375 * 145.02555 * 16 15 6 32 32 H 1.09010 * 117.49906 * 252.51674 * 17 16 15 33 33 H 1.08997 * 117.52057 * 107.48364 * 17 16 15 34 34 H 1.08996 * 110.96954 * 24.53852 * 20 18 2 35 35 H 1.08998 * 110.96884 * 148.29703 * 20 18 2 36 36 H 1.08994 * 110.46921 * 216.51224 * 21 20 18 37 37 H 1.08999 * 110.60235 * 93.93755 * 21 20 18 38 38 H 0.96996 * 124.35652 * 180.43180 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1591 -0.8995 3.5739 8 1 2.5001 -0.3318 4.4270 9 6 2.1788 -2.2884 3.6109 10 7 2.8487 -2.9112 4.5545 11 14 1.2530 -3.2704 2.3193 12 1 2.1847 -3.6566 1.2293 13 1 0.6841 -4.4931 2.9408 14 1 0.1543 -2.4419 1.7609 15 6 0.8649 0.9415 2.5889 16 6 0.6706 1.5143 3.9943 17 6 -0.4792 0.7799 3.3019 18 6 2.0400 -0.7211 -1.2493 19 1 3.1252 -0.8170 -1.2122 20 6 1.6143 0.0461 -2.5207 21 6 0.2916 -0.6696 -2.8900 22 6 0.4277 -2.0436 -2.2718 23 8 -0.2557 -3.0042 -2.5565 24 7 1.4167 -2.0451 -1.3614 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.8621 -3.8807 4.5805 29 1 0.9131 1.6472 1.7597 30 1 1.1695 1.0049 4.8188 31 1 0.5911 2.5972 4.0898 32 1 -1.3152 1.3797 2.9418 33 1 -0.7373 -0.2129 3.6705 34 1 1.4412 1.0995 -2.3010 35 1 2.3548 -0.0692 -3.3121 36 1 0.1892 -0.7466 -3.9723 37 1 -0.5618 -0.1423 -2.4636 38 1 1.6843 -2.8215 -0.8452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599155151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:48 Heat of formation + Delta-G solvation = -51.139920 kcal Electronic energy + Delta-G solvation = -21953.371230 eV Core-core repulsion = 18796.335525 eV Total energy + Delta-G solvation = -3157.035705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.05382 -40.66264 -38.29337 -37.69962 -34.96947 -33.91729 -32.94780 -32.05240 -28.54498 -27.24442 -24.81639 -23.43353 -22.84615 -22.05788 -21.48987 -20.77662 -18.88428 -18.26476 -17.95202 -17.55459 -17.14702 -16.36560 -15.86634 -15.67039 -15.31369 -14.99846 -14.85500 -14.72230 -14.30704 -14.15896 -13.55178 -13.43487 -13.19978 -12.96457 -12.85841 -12.57545 -12.31353 -12.05817 -12.00393 -11.93939 -11.74252 -11.41480 -11.16833 -10.95776 -10.80358 -10.31888 -10.07818 -9.39267 -8.43944 -6.22196 1.16010 1.25096 1.41626 1.57663 1.93475 2.36451 2.48767 2.62359 2.91772 3.25330 3.42463 3.59492 3.77596 3.95431 4.07890 4.14218 4.17214 4.21152 4.30351 4.41771 4.53887 4.69551 4.87247 4.89515 4.96453 4.99083 5.00904 5.18010 5.22666 5.25549 5.38018 5.45873 5.64897 5.77687 5.81474 6.16429 6.72202 6.85694 7.19326 7.32669 7.83146 8.61076 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.009242 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.858537 B = 3029.030031 C = 3731.539731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 H 0.149 0.851 4 C 0.445 3.555 5 O -0.587 6.587 6 N -0.450 5.450 7 C -0.329 4.329 8 H 0.074 0.926 9 C 0.032 3.968 10 N -0.918 5.918 11 Si 0.995 3.005 12 H -0.277 1.277 13 H -0.342 1.342 14 H -0.276 1.276 15 C 0.053 3.947 16 C -0.174 4.174 17 C -0.190 4.190 18 C 0.138 3.862 19 H 0.087 0.913 20 C -0.105 4.105 21 C -0.147 4.147 22 C 0.501 3.499 23 O -0.604 6.604 24 N -0.727 5.727 25 H 0.111 0.889 26 H 0.017 0.983 27 H 0.083 0.917 28 H 0.269 0.731 29 H 0.166 0.834 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.057 0.943 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.013 15.947 -13.813 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.130 4.130 3 H 0.166 0.834 4 C 0.239 3.761 5 O -0.475 6.475 6 N -0.168 5.168 7 C -0.456 4.456 8 H 0.092 0.908 9 C -0.170 4.170 10 N -0.557 5.557 11 Si 0.833 3.167 12 H -0.205 1.205 13 H -0.275 1.275 14 H -0.202 1.202 15 C -0.051 4.051 16 C -0.212 4.212 17 C -0.228 4.228 18 C 0.033 3.967 19 H 0.105 0.895 20 C -0.143 4.143 21 C -0.187 4.187 22 C 0.290 3.710 23 O -0.486 6.486 24 N -0.378 5.378 25 H 0.129 0.871 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.184 0.816 30 H 0.087 0.913 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.964 14.989 -13.963 21.336 hybrid contribution 0.182 -2.126 0.919 2.323 sum -5.782 12.863 -13.045 19.211 Atomic orbital electron populations 1.22263 0.92426 1.01370 1.05628 1.21810 0.98353 1.02082 0.90747 0.83351 1.21462 0.82214 0.86569 0.85898 1.90357 1.42576 1.28512 1.86066 1.43353 1.43631 1.25622 1.04241 1.18733 1.42188 0.89254 0.95435 0.90841 1.25996 0.95228 0.98489 0.97326 1.69785 1.40320 1.09486 1.36097 0.84898 0.76868 0.76001 0.78964 1.20513 1.27549 1.20185 1.22329 0.93989 0.90580 0.98241 1.23223 1.01868 1.00845 0.95244 1.23323 0.92977 1.01332 1.05204 1.21747 0.98256 0.81371 0.95314 0.89468 1.22795 0.95729 1.01360 0.94393 1.22594 1.01621 0.90768 1.03689 1.22019 0.78074 0.91973 0.78956 1.90679 1.49033 1.42356 1.66541 1.46794 1.36315 1.13915 1.40778 0.87055 0.96405 0.89830 0.92191 0.81650 0.91255 0.84921 0.84757 0.92404 0.84579 0.87886 0.86244 0.85421 0.77017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 7.54 71.98 0.54 -3.24 16 2 C -0.11 -2.82 1.69 -11.54 -0.02 -2.84 16 3 H 0.15 2.49 7.54 -2.39 -0.02 2.47 16 4 C 0.45 18.64 4.97 87.66 0.44 19.08 16 5 O -0.59 -30.08 9.65 -3.08 -0.03 -30.11 16 6 N -0.45 -19.68 2.59 -613.13 -1.59 -21.27 16 7 C -0.33 -18.31 8.83 84.04 0.74 -17.57 16 8 H 0.07 4.37 6.82 -2.91 -0.02 4.35 16 9 C 0.03 1.95 5.03 84.93 0.43 2.38 16 10 N -0.92 -59.05 13.96 21.66 0.30 -58.74 16 11 Si 1.00 55.49 23.91 68.60 1.64 57.13 16 12 H -0.28 -15.89 5.84 99.48 0.58 -15.31 16 13 H -0.34 -19.60 7.11 99.48 0.71 -18.90 16 14 H -0.28 -14.58 6.58 99.48 0.65 -13.93 16 15 C 0.05 1.61 4.31 44.99 0.19 1.81 16 16 C -0.17 -5.15 9.82 30.59 0.30 -4.85 16 17 C -0.19 -5.53 9.37 30.59 0.29 -5.24 16 18 C 0.14 3.43 2.93 45.44 0.13 3.56 16 19 H 0.09 2.34 7.95 -2.39 -0.02 2.32 16 20 C -0.11 -1.31 6.28 31.73 0.20 -1.12 16 21 C -0.15 -2.49 6.06 30.66 0.19 -2.30 16 22 C 0.50 15.93 7.33 87.90 0.64 16.57 16 23 O -0.60 -25.20 18.03 -3.03 -0.05 -25.25 16 24 N -0.73 -24.60 4.86 -439.43 -2.14 -26.73 16 25 H 0.11 1.54 5.32 -2.39 -0.01 1.53 16 26 H 0.02 0.56 6.60 -2.39 -0.02 0.54 16 27 H 0.08 1.88 4.36 -2.39 -0.01 1.87 16 28 H 0.27 16.62 8.31 -92.71 -0.77 15.85 16 29 H 0.17 3.36 6.26 -2.39 -0.01 3.34 16 30 H 0.07 2.64 6.43 -2.39 -0.02 2.63 16 31 H 0.13 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.14 0.63 7.85 -2.39 -0.02 0.61 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.13 1.65 6.09 -2.39 -0.01 1.64 16 38 H 0.39 16.44 7.56 -92.71 -0.70 15.74 16 Total: -1.00 -86.34 288.47 2.42 -83.92 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.21 Total: 14.82 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 4.07 Total: 6.24 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.42 Total: -106.75 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -0.08 Total: -55.37 kcal Atomic # 14 Polarization: 55.49 SS G_CDS: 1.64 Total: 57.13 kcal Total: -86.34 2.42 -83.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.780 kcal (2) G-P(sol) polarization free energy of solvation -86.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds